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Conserved domains on  [gi|124487007|ref|NP_001074697|]
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intraflagellar transport protein 70A2 [Mus musculus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459274)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-276 4.24e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.90  E-value: 4.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG2956   18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 101 VA-FLLDNPTFYSRVLRLQAAIKYSEGDLPGARSLVEQLLSGeagedsgGENDPDGLVNMGCLLYKEGHYEAACSKFFAA 179
Cdd:COG2956   98 LLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-------GPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 180 LQASGYQPDVSYNLALACYSNRHYAPALKHIaniiERGIRQHPELGVGMTTEGIDVRSVGNTV--------VLHQTALVE 251
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAAL----ERALEQDPDYLPALPRLAELYEKLGDPEealellrkALELDPSDD 246

                        250       260
                 ....*....|....*....|....*
gi 124487007 252 AFNLKAAIEYQLRNYEAAQEALTDM 276
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-531 9.67e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 9.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 372 EEAFIKLDGLAGMLTEQLRRL------TKQVQEArhnrddevvIKAVNEYDETLEKYIPVLMAQAKIYWNLENYPMVEKI 445
Cdd:COG2956   96 EELLEKLLELDPDDAEALRLLaeiyeqEGDWEKA---------IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 446 FRKSVEFCNDHDVWKLNVAHVLfMQENKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEK 525
Cdd:COG2956  167 LEKALKLDPDCARALLLLAELY-LEQGDYEEAIAALERALEQDPDY-----LPALPRLAELYEKLGDPEEALELLRKALE 240


                 ....*.
gi 124487007 526 EEEQLS 531
Cdd:COG2956  241 LDPSDD 246
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-276 4.24e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.90  E-value: 4.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG2956   18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 101 VA-FLLDNPTFYSRVLRLQAAIKYSEGDLPGARSLVEQLLSGeagedsgGENDPDGLVNMGCLLYKEGHYEAACSKFFAA 179
Cdd:COG2956   98 LLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-------GPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 180 LQASGYQPDVSYNLALACYSNRHYAPALKHIaniiERGIRQHPELGVGMTTEGIDVRSVGNTV--------VLHQTALVE 251
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAAL----ERALEQDPDYLPALPRLAELYEKLGDPEealellrkALELDPSDD 246

                        250       260
                 ....*....|....*....|....*
gi 124487007 252 AFNLKAAIEYQLRNYEAAQEALTDM 276
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQ 271
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 21-349 6.71e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 6.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007   21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFE-LAAECYEQLSQMHPELEQYRLYQAQAlYKACLYPEAT 99
Cdd:TIGR02917  66 YLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQqVLDELPGKTLLDDEGAAELLALRGLA-YLGLGQLELA 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  100 RVAFLL---DNPTFYSRVLRLqAAIKYSEGDLPGARSLVEQLLSGEAG-----------EDSGGE--------------- 150
Cdd:TIGR02917 145 QKSYEQalaIDPRSLYAKLGL-AQLALAENRFDEARALIDEVLTADPGnvdalllkgdlLLSLGNielalaayrkaialr 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  151 -NDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHPElgvgmt 229
Cdd:TIGR02917 224 pNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET----LQDALKSAPE------ 293

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  230 tegidvrsvgntvvlhqtaLVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMdAKPTEGFEKLQ 309
Cdd:TIGR02917 294 -------------------YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL-GRVDEAIATLS 353

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 124487007  310 FLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLT 349
Cdd:TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-531 9.67e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 9.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 372 EEAFIKLDGLAGMLTEQLRRL------TKQVQEArhnrddevvIKAVNEYDETLEKYIPVLMAQAKIYWNLENYPMVEKI 445
Cdd:COG2956   96 EELLEKLLELDPDDAEALRLLaeiyeqEGDWEKA---------IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 446 FRKSVEFCNDHDVWKLNVAHVLfMQENKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEK 525
Cdd:COG2956  167 LEKALKLDPDCARALLLLAELY-LEQGDYEEAIAALERALEQDPDY-----LPALPRLAELYEKLGDPEEALELLRKALE 240


                 ....*.
gi 124487007 526 EEEQLS 531
Cdd:COG2956  241 LDPSDD 246
 
Name Accession Description Interval E-value
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 21-276 4.24e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.90  E-value: 4.24e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG2956   18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 101 VA-FLLDNPTFYSRVLRLQAAIKYSEGDLPGARSLVEQLLSGeagedsgGENDPDGLVNMGCLLYKEGHYEAACSKFFAA 179
Cdd:COG2956   98 LLeKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-------GPENAHAYCELAELYLEQGDYDEAIEALEKA 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 180 LQASGYQPDVSYNLALACYSNRHYAPALKHIaniiERGIRQHPELGVGMTTEGIDVRSVGNTV--------VLHQTALVE 251
Cdd:COG2956  171 LKLDPDCARALLLLAELYLEQGDYEEAIAAL----ERALEQDPDYLPALPRLAELYEKLGDPEealellrkALELDPSDD 246

                        250       260
                 ....*....|....*....|....*
gi 124487007 252 AFNLKAAIEYQLRNYEAAQEALTDM 276
Cdd:COG2956  247 LLLALADLLERKEGLEAALALLERQ 271
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 29-140 4.15e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.01  E-value: 4.15e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  29 EAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRV---AFLL 105
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELlerALAL 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 124487007 106 DnPTFYsRVLRLQAAIKYSEGDLPGARSLVEQLLS 140
Cdd:COG4235   81 D-PDNP-EALYLLGLAAFQQGDYAEAIAAWQKLLA 113
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 11-216 9.02e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.05  E-value: 9.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  11 DGEFTAVVYRLIRD----SRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQA 86
Cdd:COG2956   72 DPDRAEALLELAQDylkaGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELA 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  87 QALYKACLYPEATRV--AFLLDNPTfYSRVLRLQAAIKYSEGDLPGARSLVEQLLsgeagedsggENDPD---GLVNMGC 161
Cdd:COG2956  152 ELYLEQGDYDEAIEAleKALKLDPD-CARALLLLAELYLEQGDYEEAIAALERAL----------EQDPDylpALPRLAE 220

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 124487007 162 LLYKEGHYEAAcSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHIANIIER 216
Cdd:COG2956  221 LYEKLGDPEEA-LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRR 274
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 32-329 1.34e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.61  E-value: 1.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  32 QLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDnptFY 111
Cdd:COG3914    1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALL---LL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 112 SRVLRLQAAIKYSEGDLPGARSLVEQLLSGEagedsggENDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSY 191
Cdd:COG3914   78 AALLELAALLLQALGRYEEALALYRRALALN-------PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 192 NLALACYSNRHYAPALKHianiIERGIRQHPElgvgmttegidvrsvgntvvlhqtaLVEAFNLKAAIEYQLRNYEAAQE 271
Cdd:COG3914  151 NLGEALRRLGRLEEAIAA----LRRALELDPD-------------------------NAEALNNLGNALQDLGRLEEAIA 201

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 124487007 272 ALTdmppRAeEELDP--VTLHNQALMNM-DAKPTEGFEKLQFLLQQNPFPPETFGNLLLLY 329
Cdd:COG3914  202 AYR----RA-LELDPdnADAHSNLLFALrQACDWEVYDRFEELLAALARGPSELSPFALLY 257
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
26-224 1.37e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 1.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  26 RYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRvafll 105
Cdd:COG0457   23 RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE----- 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 106 dnptFYSRVLRLQAaikysegdlpgarslveqllsgeagedsggeNDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGY 185
Cdd:COG0457   98 ----DYDKALELDP-------------------------------DDAEALYNLGLALLELGRYDEAIEAYERALELDPD 142

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 124487007 186 QPDVSYNLALACYSNRHYAPALKHIANIIERGIRQHPEL 224
Cdd:COG0457  143 DADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAA 181
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-145 1.57e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 1.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG4783   14 LLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALA 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 124487007 101 V--AFLLDNPTFYSRVLRLqAAIKYSEGDLPGARSLVEQLLSGEAGE 145
Cdd:COG4783   94 LleKALKLDPEHPEAYLRL-ARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 21-107 1.94e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.15  E-value: 1.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATR 100
Cdd:COG3914  156 LRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235


                 ....*..
gi 124487007 101 VAFLLDN 107
Cdd:COG3914  236 FEELLAA 242
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 21-349 6.71e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.31  E-value: 6.71e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007   21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFE-LAAECYEQLSQMHPELEQYRLYQAQAlYKACLYPEAT 99
Cdd:TIGR02917  66 YLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQqVLDELPGKTLLDDEGAAELLALRGLA-YLGLGQLELA 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  100 RVAFLL---DNPTFYSRVLRLqAAIKYSEGDLPGARSLVEQLLSGEAG-----------EDSGGE--------------- 150
Cdd:TIGR02917 145 QKSYEQalaIDPRSLYAKLGL-AQLALAENRFDEARALIDEVLTADPGnvdalllkgdlLLSLGNielalaayrkaialr 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  151 -NDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHPElgvgmt 229
Cdd:TIGR02917 224 pNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET----LQDALKSAPE------ 293

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  230 tegidvrsvgntvvlhqtaLVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMdAKPTEGFEKLQ 309
Cdd:TIGR02917 294 -------------------YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRL-GRVDEAIATLS 353

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 124487007  310 FLLQQNPFPPETFGNLLLLYCKYEYFDLAADVLAENAHLT 349
Cdd:TIGR02917 354 PALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD 393
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 68-216 2.08e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 2.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  68 YEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPTFYSRVLRLQAAIKYSEGDLPGARSLVEQLLSGEAgeds 147
Cdd:COG5010   10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP---- 85

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124487007 148 ggeNDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHIANIIER 216
Cdd:COG5010   86 ---NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-344 2.59e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.65  E-value: 2.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  46 AGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRV-AFLLDNPTFYSRVLRLQAAIKYS 124
Cdd:COG2956    9 LGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIhQKLLERDPDRAEALLELAQDYLK 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 125 EGDLPGARSLVEQLLSGEagedsggENDPDGLVNMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYA 204
Cdd:COG2956   89 AGLLDRAEELLEKLLELD-------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 205 PALKHianiIERGIRQHPElgvgmttegidvrsvgntvvlhqtaLVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEEL 284
Cdd:COG2956  162 EAIEA----LEKALKLDPD-------------------------CARALLLLAELYLEQGDYEEAIAALERALEQDPDYL 212

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 285 DPVTLHNQALMNMDaKPTEGFEKLQFLLQQNPFPPETFgNLLLLYCKYEYFDLAADVLAE 344
Cdd:COG2956  213 PALPRLAELYEKLG-DPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLER 270
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 15-182 1.23e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.46  E-value: 1.23e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007   15 TAVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACL 94
Cdd:TIGR02917 163 LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007   95 YPEA-TRVAFLLDNPTFYSRVLRLQAAIKYSEGDLPGARSLVEQLLSgeagedSGGENDPDGLVnMGCLLYKEGHYEAAC 173
Cdd:TIGR02917 243 FEEAeKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK------SAPEYLPALLL-AGASEYQLGNLEQAY 315


                  ....*....
gi 124487007  174 SKFFAALQA 182
Cdd:TIGR02917 316 QYLNQILKY 324
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 16-147 2.72e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.21  E-value: 2.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  16 AVVYRLIRdsRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLY 95
Cdd:COG3914  119 GNLLLALG--RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 124487007  96 PEAT---RVAFLL--DNPTFYSRVLRlqaaIKYSEGDLPGARSLVEQLLSGEAGEDS 147
Cdd:COG3914  197 EEAIaayRRALELdpDNADAHSNLLF----ALRQACDWEVYDRFEELLAALARGPSE 249
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 19-91 9.61e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.20  E-value: 9.61e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 124487007  19 YRLIRDSRYSEAVQLLSAELQR---SSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPE---LEQYRLYQAQALYK 91
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLE 79
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 372-531 9.67e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 9.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 372 EEAFIKLDGLAGMLTEQLRRL------TKQVQEArhnrddevvIKAVNEYDETLEKYIPVLMAQAKIYWNLENYPMVEKI 445
Cdd:COG2956   96 EELLEKLLELDPDDAEALRLLaeiyeqEGDWEKA---------IEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 446 FRKSVEFCNDHDVWKLNVAHVLfMQENKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEK 525
Cdd:COG2956  167 LEKALKLDPDCARALLLLAELY-LEQGDYEEAIAALERALEQDPDY-----LPALPRLAELYEKLGDPEEALELLRKALE 240


                 ....*.
gi 124487007 526 EEEQLS 531
Cdd:COG2956  241 LDPSDD 246
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 410-560 1.05e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 1.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 410 KAVNEYDETLE---KYIPVLMAQAKIYWNLENYPMVEKIFRKSVEFCNDHDVWKLNVAHvLFMQENKYKEAIGFYEPIVK 486
Cdd:COG2956   26 KAIDLLEEALEldpETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ-DYLKAGLLDRAEELLEKLLE 104

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 124487007 487 KNYDNILsvsaiVLANLCVSYIMTSQNEEAEELMRKIEKEeeqlsygDPDKKIYHlcivnLVIGTLYCAKGNYD 560
Cdd:COG2956  105 LDPDDAE-----ALRLLAEIYEQEGDWEKAIEVLERLLKL-------GPENAHAY-----CELAELYLEQGDYD 161
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 21-87 1.49e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.22  E-value: 1.49e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 124487007  21 LIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQ 87
Cdd:COG4235   61 LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 80-223 1.83e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 1.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  80 QYRLYQAQALYKACLYPEATRV--AFLLDNPTfYSRVLRLQAAIKYSEGDLPGARSLVEQLLSGEAgedsggeNDPDGLV 157
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALleKALELDPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP-------DEPEARL 76

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 124487007 158 NMGCLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHianiIERGIRQHPE 223
Cdd:COG4783   77 NLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAA----LEKALELDPD 138
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 16-98 2.01e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 2.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  16 AVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLY 95
Cdd:COG5010   59 PSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138


                 ...
gi 124487007  96 PEA 98
Cdd:COG5010  139 DEA 141
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
410-542 2.12e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.38  E-value: 2.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 410 KAVNEYDETLE---KYIPVLMAQAKIYWNLENYPMVEKIFRKSVEFCNDHDVWKLNVAHVLFMQeNKYKEAIGFYEPIVK 486
Cdd:COG0457   60 EALADYEQALEldpDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL-GRYDEAIEAYERALE 138

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 124487007 487 KNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKIEKEEEQLSYGDPDKKIYHL 542
Cdd:COG0457  139 LDPDD-----ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALA 189
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 386-522 2.13e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 2.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 386 TEQLRRLTKQVQEARHNRDDEVVIKAVNEYDETLEKYIPVLMAQAKIYWNLENYPMVEKIFRKSVEFCNDHDVWKLNVAH 465
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 124487007 466 VLFMQeNKYKEAIGFYEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRK 522
Cdd:COG4783   81 ALLKA-GDYDEALALLEKALKLDPEH-----PEAYLRLARAYRALGRPDEAIAALEK 131
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
54-140 2.49e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.84  E-value: 2.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  54 CYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPTFYSRVLRLQAAIKYSEGDLPGARS 133
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80


                 ....*..
gi 124487007 134 LVEQLLS 140
Cdd:COG3063   81 YLERALE 87
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 324-523 4.12e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.36  E-value: 4.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 324 NLLLLYCKYEYFDLAADVLAENAHLTYKFLTPYLYDFLDAMITCQTAPEEAFIKLDGLAGMLTEQLRRLTKQvqearhNR 403
Cdd:COG3914   20 AAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL------GR 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 404 DDEvvikAVNEYDETLE---KYIPVLMAQAKIYWNLENYPMVEKIFRKSVEFCNDHDVWKLNVAHVLFMQeNKYKEAIGF 480
Cdd:COG3914   94 YEE----ALALYRRALAlnpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL-GRLEEAIAA 168

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 124487007 481 YEPIVKKNYDNilsvsAIVLANLCVSYIMTSQNEEAEELMRKI 523
Cdd:COG3914  169 LRRALELDPDN-----AEALNNLGNALQDLGRLEEAIAAYRRA 206
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 16-94 5.23e-03

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.51  E-value: 5.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007  16 AVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLY----------- 84
Cdd:COG3071  229 VRLYGRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELarlleqlgdpe 308

                         90
                 ....*....|
gi 124487007  85 QAQALYKACL 94
Cdd:COG3071  309 EAAEHYRKAL 318
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
121-216 5.99e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 5.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 124487007 121 IKYSEGDLPGARSLVEQLLSGEAgedsggeNDPDGLVNMGCLLYKEGHYEAAcSKFFAALQASGYQPDVSYNLALACYSN 200
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDP-------DNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLEL 72

                         90
                 ....*....|....*.
gi 124487007 201 RHYAPALKHIANIIER 216
Cdd:COG3063   73 GDYDEALAYLERALEL 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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