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Conserved domains on  [gi|145323986|ref|NP_001077582|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 34-659 8.68e-103

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 333.74  E-value: 8.68e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  34 SETSKTHDDESvpqvlfnSFRHCISHGQLYEAFRTFSLLRYQSGSHEFVLYssASLLSTCVGFNEFVPGQQLHAHCISS- 112
Cdd:PLN03077  46 SSSSSTHDSNS-------QLRALCSHGQLEQALKLLESMQELRVPVDEDAY--VALFRLCEWKRAVEEGSRVCSRALSSh 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 113 ---GLEFDSVLVPKLVTFYsafNLLDEAQTITENSEiLHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPS 189
Cdd:PLN03077 117 pslGVRLGNAMLSMFVRFG---ELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 190 VIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEA 269
Cdd:PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 270 FKL-----------------------------------------------------LDRMYL------------SGVEA- 283
Cdd:PLN03077 273 LELfftmrelsvdpdlmtitsvisacellgderlgremhgyvvktgfavdvsvcnsLIQMYLslgswgeaekvfSRMETk 352

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 284 SIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIdnVRNSL 363
Cdd:PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV--VANAL 430

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 364 ITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSgFHPNHITLASILPLFARVGNLQHGK 443
Cdd:PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 444 EFHCYILRRQSYKDCLiLWNSLVDMYAKSGEIIAAKRVFDSMRKrDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKP 523
Cdd:PLN03077 510 EIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 524 DHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCATLLKAC 603
Cdd:PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667

                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 145323986 604 LIHGNTNIGEWAAdKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDLGV 659
Cdd:PLN03077 668 RIHRHVELGELAA-QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 34-659 8.68e-103

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 333.74  E-value: 8.68e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  34 SETSKTHDDESvpqvlfnSFRHCISHGQLYEAFRTFSLLRYQSGSHEFVLYssASLLSTCVGFNEFVPGQQLHAHCISS- 112
Cdd:PLN03077  46 SSSSSTHDSNS-------QLRALCSHGQLEQALKLLESMQELRVPVDEDAY--VALFRLCEWKRAVEEGSRVCSRALSSh 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 113 ---GLEFDSVLVPKLVTFYsafNLLDEAQTITENSEiLHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPS 189
Cdd:PLN03077 117 pslGVRLGNAMLSMFVRFG---ELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 190 VIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEA 269
Cdd:PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 270 FKL-----------------------------------------------------LDRMYL------------SGVEA- 283
Cdd:PLN03077 273 LELfftmrelsvdpdlmtitsvisacellgderlgremhgyvvktgfavdvsvcnsLIQMYLslgswgeaekvfSRMETk 352

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 284 SIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIdnVRNSL 363
Cdd:PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV--VANAL 430

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 364 ITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSgFHPNHITLASILPLFARVGNLQHGK 443
Cdd:PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 444 EFHCYILRRQSYKDCLiLWNSLVDMYAKSGEIIAAKRVFDSMRKrDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKP 523
Cdd:PLN03077 510 EIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 524 DHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCATLLKAC 603
Cdd:PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667

                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 145323986 604 LIHGNTNIGEWAAdKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDLGV 659
Cdd:PLN03077 668 RIHRHVELGELAA-QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 491-537 1.20e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 54.29  E-value: 1.20e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 145323986  491 VTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSH 537
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 491-524 3.09e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.06  E-value: 3.09e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 145323986  491 VTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPD 524
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 34-659 8.68e-103

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 333.74  E-value: 8.68e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  34 SETSKTHDDESvpqvlfnSFRHCISHGQLYEAFRTFSLLRYQSGSHEFVLYssASLLSTCVGFNEFVPGQQLHAHCISS- 112
Cdd:PLN03077  46 SSSSSTHDSNS-------QLRALCSHGQLEQALKLLESMQELRVPVDEDAY--VALFRLCEWKRAVEEGSRVCSRALSSh 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 113 ---GLEFDSVLVPKLVTFYsafNLLDEAQTITENSEiLHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPS 189
Cdd:PLN03077 117 pslGVRLGNAMLSMFVRFG---ELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 190 VIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEA 269
Cdd:PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 270 FKL-----------------------------------------------------LDRMYL------------SGVEA- 283
Cdd:PLN03077 273 LELfftmrelsvdpdlmtitsvisacellgderlgremhgyvvktgfavdvsvcnsLIQMYLslgswgeaekvfSRMETk 352

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 284 SIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIdnVRNSL 363
Cdd:PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV--VANAL 430

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 364 ITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSgFHPNHITLASILPLFARVGNLQHGK 443
Cdd:PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 444 EFHCYILRRQSYKDCLiLWNSLVDMYAKSGEIIAAKRVFDSMRKrDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKP 523
Cdd:PLN03077 510 EIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 524 DHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCATLLKAC 603
Cdd:PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667

                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 145323986 604 LIHGNTNIGEWAAdKLLLETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDLGV 659
Cdd:PLN03077 668 RIHRHVELGELAA-QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 163-642 2.64e-78

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 264.43  E-value: 2.64e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 163 KRFQESVSVYKRMMSKG-IRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRL 241
Cdd:PLN03081 101 GRHREALELFEILEAGCpFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 242 FDRMSERdavswnaiincytseeklgeafklldrmylsgveaSIVTWNTIAGGCLEAGNYIGALNCVVGM----RNCNVR 317
Cdd:PLN03081 181 FDEMPER-----------------------------------NLASWGTIIGGLVDAGNYREAFALFREMwedgSDAEPR 225

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 318 IGSVAmingLKACSHIGALKWGKVFHCLVIRSCSFSHDIdnVRNSLITMYSRCSDLRHAFIVFQQVEANSLSTWNSIISG 397
Cdd:PLN03081 226 TFVVM----LRASAGLGSARAGQQLHCCVLKTGVVGDTF--VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 398 FAYNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYILRRQSYKDclILWNS-LVDMYAKSGEII 476
Cdd:PLN03081 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD--IVANTaLVDLYSKWGRME 377

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 477 AAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVREGHWLFTKMEHVFG 556
Cdd:PLN03081 378 DARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 557 IRLRLEHYSCMVDLYCRAGYLDKARDIFHTIPYEPSSAMCATLLKACLIHGNTNIGEWAADKlLLETKPEHLGHYMLLAD 636
Cdd:PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK-LYGMGPEKLNNYVVLLN 536


                 ....*.
gi 145323986 637 MYAVTG 642
Cdd:PLN03081 537 LYNSSG 542
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 57-299 7.69e-24

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 106.88  E-value: 7.69e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  57 ISHGQLYEAFRTFSLLrYQSGS----HEFV--LYSSASLLSTCVGfnefvpgQQLHAHCISSGLEFDSVLVPKLVTFYSA 130
Cdd:PLN03081 200 VDAGNYREAFALFREM-WEDGSdaepRTFVvmLRASAGLGSARAG-------QQLHCCVLKTGVVGDTFVSCALIDMYSK 271

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 131 FNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGSI 210
Cdd:PLN03081 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 211 EVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNT 290
Cdd:PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431


                 ....*....
gi 145323986 291 IAGGCLEAG 299
Cdd:PLN03081 432 VLSACRYSG 440
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 103-258 3.73e-10

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 63.35  E-value: 3.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 103 QQLHAHCISSGLEFDSVLVPKLVTFYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRA 182
Cdd:PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986 183 DEFTYPSVIKACA--ALLD-----FAYGRVVHGSIEVSSHrcnlYVCnaLISMYKRFGKVDVARRLFDRMSERDAVS-WN 254
Cdd:PLN03081 425 NHVTFLAVLSACRysGLSEqgweiFQSMSENHRIKPRAMH----YAC--MIELLGREGLLDEAYAMIRRAPFKPTVNmWA 498


                 ....
gi 145323986 255 AIIN 258
Cdd:PLN03081 499 ALLT 502
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 327-614 6.19e-10

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 62.59  E-value: 6.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  327 LKACSHIGALKWGKVFhCLVIRSCSFSHdidnvRNSLITMYSRCSDLRHAFIVFQQVEANSLST----WNSIISGFAYNE 402
Cdd:PLN03218  413 FKACKKQRAVKEAFRF-AKLIRNPTLST-----FNMLMSVCASSQDIDGALRVLRLVQEAGLKAdcklYTTLISTCAKSG 486

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  403 RSEETSFLLKEMLLSGFHPNHITLASILPLFARVGnlQHGKEFHCY-ILRRQSYKDCLILWNSLVDMYAKSGeiiAAKRV 481
Cdd:PLN03218  487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYgIMRSKNVKPDRVVFNALISACGQSG---AVDRA 561

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  482 FD---SMR------KRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSnlvreGHWLF---- 548
Cdd:PLN03218  562 FDvlaEMKaethpiDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-----GDWDFalsi 636

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 145323986  549 --------TKMEHVFgirlrlehYSCMVDLYCRAGYLDKARDIFH---TIPYEPSSAMCATLLKAClihgnTNIGEW 614
Cdd:PLN03218  637 yddmkkkgVKPDEVF--------FSALVDVAGHAGDLDKAFEILQdarKQGIKLGTVSYSSLMGAC-----SNAKNW 700
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 491-537 1.20e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 54.29  E-value: 1.20e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 145323986  491 VTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSH 537
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 248-295 2.60e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.44  E-value: 2.60e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 145323986  248 RDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGC 295
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 152-195 1.18e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.51  E-value: 1.18e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 145323986  152 WNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACA 195
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 462-502 2.99e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 47.36  E-value: 2.99e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 145323986  462 WNSLVDMYAKSGEIIAAKRVFDSMRKR----DKVTYTSLIDGYGR 502
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 491-524 3.09e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.06  E-value: 3.09e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 145323986  491 VTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPD 524
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 152-327 1.08e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.19  E-value: 1.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  152 WNVLIGSYIRNKRFQESVSVYKRMM--SKGIRADEFTYPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMY 229
Cdd:PLN03218  545 FNALISACGQSGAVDRAFDVLAEMKaeTHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  230 KRFGKVDVARRLFDRMSER----DAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGAL 305
Cdd:PLN03218  625 SQKGDWDFALSIYDDMKKKgvkpDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704

                         170       180
                  ....*....|....*....|..
gi 145323986  306 NCVVGMRNCNVRiGSVAMINGL 327
Cdd:PLN03218  705 ELYEDIKSIKLR-PTVSTMNAL 725
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 491-521 2.62e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 44.38  E-value: 2.62e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 145323986  491 VTYTSLIDGYGRLGKGEVALAWFKDMDRSGI 521
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 152-184 5.38e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 5.38e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 145323986  152 WNVLIGSYIRNKRFQESVSVYKRMMSKGIRADE 184
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 606-661 5.66e-05

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 41.37  E-value: 5.66e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 145323986  606 HGNTNIGEWAADKLLlETKPEHLGHYMLLADMYAVTGSWSKLVTVKTLLSDLGVQK 661
Cdd:pfam20431   1 YSNVELAEKAANILL-ELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKK 55
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 480-535 2.73e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.65  E-value: 2.73e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 145323986  480 RVFDSMRKR----DKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSAC 535
Cdd:pfam13812   1 SILREMVRDgiqlNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 218-260 3.42e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 38.88  E-value: 3.42e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 145323986  218 NLYVCNALISMYKRFGKVDVARRLFDRMSER----DAVSWNAIINCY 260
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGL 48
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 152-180 6.19e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.44  E-value: 6.19e-04
                          10        20
                  ....*....|....*....|....*....
gi 145323986  152 WNVLIGSYIRNKRFQESVSVYKRMMSKGI 180
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 251-285 9.30e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 37.05  E-value: 9.30e-04
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 145323986  251 VSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASI 285
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 251-281 1.01e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.06  E-value: 1.01e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 145323986  251 VSWNAIINCYTSEEKLGEAFKLLDRMYLSGV 281
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 244-276 1.07e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.94  E-value: 1.07e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 145323986  244 RMSERDAVSWNAIINCYTSEEKLGEAFKLLDRM 276
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 460-488 3.23e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.52  E-value: 3.23e-03
                          10        20
                  ....*....|....*....|....*....
gi 145323986  460 ILWNSLVDMYAKSGEIIAAKRVFDSMRKR 488
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEK 29
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 460-489 5.63e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 5.63e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 145323986  460 ILWNSLVDMYAKSGEIIAAKRVFDSMRKRD 489
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 218-260 6.69e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.41  E-value: 6.69e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 145323986  218 NLYVCNALISMYKRFGKVDVARRLFDRMSER----DAVSWNAIINCY 260
Cdd:pfam13812  14 NVNTYTHLLHAYANVGNLKLALEIFERMKKKgikpTLDTYNAILGVI 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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