|
Name |
Accession |
Description |
Interval |
E-value |
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
2-418 |
0e+00 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 698.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 2 VLAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFS 81
Cdd:TIGR01425 1 VLAQLGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 82 ELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161
Cdd:TIGR01425 81 ELCNLVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 162 SYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA 241
Cdd:TIGR01425 161 SYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 242 VGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLE 321
Cdd:TIGR01425 241 VGSVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 322 KLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDSSNpKVF--NES 399
Cdd:TIGR01425 321 HLKEGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHPMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTA-KTMlkDPS 399
|
410
....*....|....*....
gi 145324887 400 RMMRIARGSGRQVREVMEI 418
Cdd:TIGR01425 400 RIRRVARGSGRDIREVNEL 418
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-417 |
7.13e-169 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 480.86 E-value: 7.13e-169
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 6 LGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCK 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 86 ML-DPGKPAFAPKKAkaSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT 164
Cdd:PRK00771 81 LLgEETEPLVLPLKP--QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 165 ESDPVKIAVEGVDTFKKEncDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGA 244
Cdd:PRK00771 159 NKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 245 VIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLS 324
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 325 QGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEmMPKGHEKESQAKIKRYMTMMDSMTNDELDssNPKVFNESRMMRI 404
Cdd:PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGK-LPDEALEVTEEKLKKYKAIMDSMTEEELE--NPEIINASRIRRI 393
|
410
....*....|...
gi 145324887 405 ARGSGRQVREVME 417
Cdd:PRK00771 394 ARGSGTTVEDVRE 406
|
|
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
6-415 |
8.57e-146 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 421.74 E-value: 8.57e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 6 LGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIK-KIVN---LEDLAAGHNKRRIIEQaifs 81
Cdd:COG0541 5 LSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKeRALGeevLKSLTPGQQVIKIVHD---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 82 ELCKMLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYG 161
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIGVPVFP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 162 SYTESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA 241
Cdd:COG0541 161 EEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEALG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 242 VGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLE 321
Cdd:COG0541 241 LTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLAK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 322 KLSQGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAeMMPKGHEKESQAKIKRYMTMMDSMTNDELDssNPKVFNESRM 401
Cdd:COG0541 321 KLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGK-LKQLKDLDIDEKELKRIEAIINSMTPEERR--NPDIINGSRK 397
|
410
....*....|....
gi 145324887 402 MRIARGSGRQVREV 415
Cdd:COG0541 398 RRIAKGSGTTVQDV 411
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
102-294 |
6.54e-140 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 397.72 E-value: 6.54e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:cd17875 1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 145324887 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
6-415 |
6.74e-113 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 338.11 E-value: 6.74e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 6 LGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCK 85
Cdd:TIGR00959 4 LSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 86 MLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKK-GYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYT 164
Cdd:TIGR00959 84 ILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKqGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 165 ESDPVKIAVEGVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGA 244
Cdd:TIGR00959 164 GQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTG 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 245 VIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFVDKLQEVVPKDQQPELLEKLS 324
Cdd:TIGR00959 244 VVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAEKMK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 325 QGNFTLRIMYDQFQNILNMGPLKEVFSMLPGISAEMMPKGHEKESQAKIKRYMTMMDSMTNDELDssNPKVFNESRMMRI 404
Cdd:TIGR00959 324 KGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKPSLSDADLDEKQFKRIEAIISSMTPEERR--NPKILNPSRRKRI 401
|
410
....*....|.
gi 145324887 405 ARGSGRQVREV 415
Cdd:TIGR00959 402 AAGSGTTVQDV 412
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-294 |
7.03e-109 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 319.10 E-value: 7.03e-109
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 145324887 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:pfam00448 161 IVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
103-296 |
3.39e-92 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 276.60 E-value: 3.39e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 103 VVMFVGLQGAGKTTTCTKYAYYHQKKG-YKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:smart00962 3 VILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:smart00962 83 RGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAALS 162
|
170 180 190
....*....|....*....|....*....|....*
gi 145324887 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
Cdd:smart00962 163 IAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
103-294 |
2.05e-89 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 269.24 E-value: 2.05e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKE 182
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 183 NCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALSA 262
Cdd:cd03115 82 GYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALSI 161
|
170 180 190
....*....|....*....|....*....|..
gi 145324887 263 VAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd03115 162 VAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
6-296 |
8.27e-68 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 217.58 E-value: 8.27e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 6 LGGRITRAIqqmSNVTIIDEKALNEcLNEItraLLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNkrriIEQAIFSELCK 85
Cdd:COG0552 16 LGEKLKSLF---SGKKKIDEDLLEE-LEEL---LIEADVGVETTEEIIEELRERVKRKKLKDPEE----LKEALKEELLE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 86 MLDPGKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTE 165
Cdd:COG0552 85 ILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEVWGERVGVPVIAQKEG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 166 SDPVKIAVEGVDTFKKENCDLIIVDTSGR-HKQeASLFEE---MRQVAE---ATKPDLVIFVMDSSIGQAAFDQAQAFKQ 238
Cdd:COG0552 165 ADPAAVAFDAIQAAKARGADVVIIDTAGRlHNK-KNLMEElkkIKRVIKkldPDAPHEVLLVLDATTGQNALSQAKVFNE 243
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 145324887 239 SVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
Cdd:COG0552 244 AVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
19-296 |
2.63e-67 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 217.53 E-value: 2.63e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 19 NVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCKMLDPGKPAFAPKK 98
Cdd:PRK14974 54 KITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDLFDLIEE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 99 AKAS----VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVE 174
Cdd:PRK14974 134 IKSKgkpvVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYD 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 175 GVDTFKKENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHA 254
Cdd:PRK14974 214 AIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADA 293
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 145324887 255 KGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
Cdd:PRK14974 294 KGGAALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-294 |
1.09e-63 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 203.21 E-value: 1.09e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKK 181
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAKE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:cd18539 81 EGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 145324887 262 AVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd18539 161 IRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
26-295 |
2.14e-62 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 202.87 E-value: 2.14e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 26 KALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEQAIFSELCKMLDPG-KPAFAPKKAKASVV 104
Cdd:TIGR00064 1 KDDEDFFEELEEILLESDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKNtDLELIVEENKPNVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 105 MFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENC 184
Cdd:TIGR00064 81 LFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 185 DLIIVDTSGRHKQEASLFEEMRQVAEATK------PDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGG 258
Cdd:TIGR00064 161 DVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTAKGGI 240
|
250 260 270
....*....|....*....|....*....|....*..
gi 145324887 259 ALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLL 295
Cdd:TIGR00064 241 ILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
10-296 |
5.47e-61 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 200.71 E-value: 5.47e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 10 ITRAIQQMSNVTIIDEKALNEcLNEItraLLQSDVSFPLVKEMQSNIKKIVNLEDLAAGhnkrRIIEQAIFSELCKMLDP 89
Cdd:PRK10416 31 FGEGINGLFAKKKIDEDLLEE-LEEL---LIEADVGVETTEEIIEELRERVKRKNLKDP----EELKELLKEELAEILEP 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 90 GKPAFAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPV 169
Cdd:PRK10416 103 VEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPA 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 170 KIAVEGVDTFKKENCDLIIVDTSGR-HKQeASLFEE---MRQV---AEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAV 242
Cdd:PRK10416 183 SVAFDAIQAAKARGIDVLIIDTAGRlHNK-TNLMEElkkIKRVikkADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGL 261
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 145324887 243 GAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLG 296
Cdd:PRK10416 262 TGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
103-294 |
2.72e-54 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 179.30 E-value: 2.72e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKE 182
Cdd:cd17874 2 VILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAKAR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 183 NCDLIIVDTSGRHKQEASLFEEMRQV------AEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKG 256
Cdd:cd17874 82 GIDVVLIDTAGRLHTKKNLMEELKKIkrvikkKDPEAPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTAKG 161
|
170 180 190
....*....|....*....|....*....|....*...
gi 145324887 257 GGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd17874 162 GIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
2-296 |
5.69e-38 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 141.16 E-value: 5.69e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 2 VLAELGgRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDlaaghnkrriIEQAIFS 81
Cdd:COG1419 79 LRRELA-ELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLSAEE----------AWRALLE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 82 ELCKMLD-PGKPAFAPKKakasVVMFVGLQGAGKTTTCTKYA-YYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPF 159
Cdd:COG1419 148 ALARRLPvAEDPLLDEGG----VIALVGPTGVGKTTTIAKLAaRFVLRGKKKVALITTDTYRIGAVEQLKTYARILGVPV 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 160 YGSYTESDpVKIAVEGVdtfkkENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSI-GQAAFDQAQAFKq 238
Cdd:COG1419 224 EVAYDPEE-LKEALERL-----RDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVLSATTkYEDLKEIVEAFS- 296
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 145324887 239 SVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 296
Cdd:COG1419 297 SLGLDGLILTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
103-294 |
3.76e-36 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 131.58 E-value: 3.76e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKE 182
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARDQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 183 NCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGA----------VIITKMDG 252
Cdd:cd17876 82 GFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSpsdnprlidgIVLTKFDT 161
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 145324887 253 -HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
Cdd:cd17876 162 iDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
328-417 |
4.17e-33 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 119.81 E-value: 4.17e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 328 FTLRIMYDQFQNILNMGPLKEVFSMLPGisaeMMPKGHEKESQAKIKRYMTMMDSMTNDELDssNPKVFNESRMMRIARG 407
Cdd:pfam02978 2 FTLRDFLEQLQQIKKMGPLSKILSMIPG----MGKKDDDIDSEKKLKRIEAIIDSMTPKERD--NPDIINASRKRRIARG 75
|
90
....*....|
gi 145324887 408 SGRQVREVME 417
Cdd:pfam02978 76 SGTSVQEVNR 85
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
103-294 |
1.95e-29 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 113.03 E-value: 1.95e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 103 VVMFVGLQGAGKTTTCTKYA-YYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDpVKIAVEGVdtfkk 181
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAaRYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPED-LADALERL----- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 182 ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMdsSIGQAAFDQAQAFKQ--SVAVGAVIITKMDGHAKGGGA 259
Cdd:cd17873 76 SDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVL--SATTKAKDLKEIIERfsPLGYRGLILTKLDETTSLGSV 153
|
170 180 190
....*....|....*....|....*....|....*.
gi 145324887 260 LSAVAATKSPVIFIGTGEHM-DEFEVFDVKPFVSRL 294
Cdd:cd17873 154 LSVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
34-296 |
2.18e-27 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 113.07 E-value: 2.18e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 34 EITRALLQSDVSFPLVKEMqsnIKKIVNLEDLAAGHNKRRIIEQaifseLCKMLDPGKPAFAPKKakaSVVMFVGLQGAG 113
Cdd:PRK05703 165 ELYKRLKRSGLSPEIAEKL---LKLLLEHMPPRERTAWRYLLEL-----LANMIPVRVEDILKQG---GVVALVGPTGVG 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 114 KTTTCTK----YAYYHQKKgyKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIavegVDTFKkeNCDLIIV 189
Cdd:PRK05703 234 KTTTLAKlaarYALLYGKK--KVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKA----LEQLR--DCDVILI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 190 DTSGRHKQEASLFEEMRQVAEATKPDLVIF-VMdSSIGQ-----AAFDQaqaFKQsVAVGAVIITKMDGHAKGGGALSAV 263
Cdd:PRK05703 306 DTAGRSQRDKRLIEELKALIEFSGEPIDVYlVL-SATTKyedlkDIYKH---FSR-LPLDGLIFTKLDETSSLGSILSLL 380
|
250 260 270
....*....|....*....|....*....|....
gi 145324887 264 AATKSPVIFIGTGEHM-DEFEVFDVKPFVSRLLG 296
Cdd:PRK05703 381 IESGLPISYLTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
23-193 |
1.41e-18 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 85.46 E-value: 1.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 23 IDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDlaaghnkrriIEQAIFSELCKMLdPGKPAFAPKKAKAS 102
Cdd:TIGR03499 127 LAWLQRPPERAKLYERLLEAGVSEELARELLEKLPEDADAED----------AWRWLREALEGML-PVKPEEDPILEQGG 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 103 VVMFVGLQGAGKTTTCTK----YAYYHQKKgyKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDpVKIAVEgvdt 178
Cdd:TIGR03499 196 VIALVGPTGVGKTTTLAKlaarFALEHGKK--KVALITTDTYRIGAVEQLKTYAEILGIPVKVARDPKE-LREALD---- 268
|
170
....*....|....*
gi 145324887 179 fKKENCDLIIVDTSG 193
Cdd:TIGR03499 269 -RLRDKDLILIDTAG 282
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
3.98e-14 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 67.11 E-value: 3.98e-14
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 145324887 6 LGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKK-IVNLEDLaaghNKRRIIEQAIFSEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREkAVGEKKL----KPPQEVKKILKEEL 75
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
103-281 |
1.42e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 72.08 E-value: 1.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFygsYTESDPVKIAvEGVDTFKKE 182
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL---IVATSPAELE-EAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 183 NC-DLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:PRK12726 284 NCvDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYT 363
|
170 180
....*....|....*....|
gi 145324887 262 AVAATKSPVIFIGTGEHMDE 281
Cdd:PRK12726 364 VMQETNLPVLYMTDGQNITE 383
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
21-251 |
9.28e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 66.53 E-value: 9.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 21 TIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNkrrIIEQAI-FSELCKMLDPGKPAFAPKKa 99
Cdd:PRK12724 146 TTIVRKEKDSPLQRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHN---VTERAVtYLEERVSVDSDLFSGTGKN- 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 100 KASVVMFVGLQGAGKTTTCTKYAY-YHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYgsytesdPVKIAVEGVDT 178
Cdd:PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAkYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-------PVKDIKKFKET 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 145324887 179 FKKENCDLIIVDTSGRHKQEASLFEEMRQVAEA-TKPDLV--IFVMDSSigqAAFDQAQAFK---QSVAVGAVIITKMD 251
Cdd:PRK12724 295 LARDGSELILIDTAGYSHRNLEQLERMQSFYSCfGEKDSVenLLVLSST---SSYHHTLTVLkayESLNYRRILLTKLD 370
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
32-308 |
2.59e-10 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 61.84 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 32 LNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLaaghNKRRIIEQAIFSELCKMLDPGKPAFAPKKAKasVVMFVGLQG 111
Cdd:PRK12723 111 ILKIEDILRENDFSESYIKDINEFIKKEFSLSDL----DDYDKVRDSVIIYIAKTIKCSGSIIDNLKKR--VFILVGPTG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 112 AGKTTTCTKYAYYH----QKKGYKPALVCADTFRAGAfdqlkqnatKAKIPFYGsytesDPVKIAVEGVDTFKK------ 181
Cdd:PRK12723 185 VGKTTTIAKLAAIYginsDDKSLNIKIITIDNYRIGA---------KKQIQTYG-----DIMGIPVKAIESFKDlkeeit 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 182 --ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAfDQAQAFKQSVAVG--AVIITKMDGHAKGG 257
Cdd:PRK12723 251 qsKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS-DVKEIFHQFSPFSykTVIFTKLDETTCVG 329
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 145324887 258 GALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLLG--MGDWSGFVDKLQ 308
Cdd:PRK12723 330 NLISLIYEMRKEVSYVTDGQIVPHnISIAEPLTFIKKINGyrISDDAEFIRKLK 383
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
104-277 |
4.35e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 61.24 E-value: 4.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 104 VMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNatkakIPFYGSYTESDPVKIAVEGVDTFKKEN 183
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDY-----VKTIGFEVIAVRDEAAMTRALTYFKEE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 184 C--DLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGALS 261
Cdd:PRK11889 319 ArvDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELLK 398
|
170
....*....|....*.
gi 145324887 262 AVAATKSPVIFIGTGE 277
Cdd:PRK11889 399 IPAVSSAPIVLMTDGQ 414
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
6.09e-10 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 55.25 E-value: 6.09e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 145324887 10 ITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNKRRIIEqAIFSELCKML 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKGEVLKGLTPKQEVKK-ILKEELVKIL 77
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
98-277 |
1.25e-09 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 58.60 E-value: 1.25e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 98 KAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKiaveGVD 177
Cdd:PRK06731 72 EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTR----ALT 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 178 TFKKE-NCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKG 256
Cdd:PRK06731 148 YFKEEaRVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASS 227
|
170 180
....*....|....*....|.
gi 145324887 257 GGALSAVAATKSPVIFIGTGE 277
Cdd:PRK06731 228 GELLKIPAVSSAPIVLMTDGQ 248
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
25-295 |
2.88e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 59.04 E-value: 2.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 25 EKALNECLNE-ITRALLQSDVSFPLVKEMqsnikkivnLEDLAAGHNKRRIIEQaIFSELCKMLdpgkPAFAPKK---AK 100
Cdd:PRK14723 119 EVAGRDPLRAsLFRWLLGAGFSGQLARAL---------LERLPVGYDRPAAMAW-IRNELATHL----PVLRDEDallAQ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 101 ASVVMFVGLQGAGKTTTCTKYA--YYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGsytesdpVKIAVEGVDT 178
Cdd:PRK14723 185 GGVLALVGPTGVGKTTTTAKLAarCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHA-------VKDAADLRFA 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 179 FKK-ENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMD-SSIGQAAFDQAQAFKQSVA--VGAVIITKMDGHA 254
Cdd:PRK14723 258 LAAlGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNaASHGDTLNEVVHAYRHGAGedVDGCIITKLDEAT 337
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 145324887 255 KGGGALSAVAATKSPVIFIGTGEHMDE-FEVFDVKPFVSRLL 295
Cdd:PRK14723 338 HLGPALDTVIRHRLPVHYVSTGQKVPEhLELAQADELVDRAF 379
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
2-324 |
3.64e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 58.19 E-value: 3.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 2 VLAELGGRITRAIQQMSNVTIIDEKALNECLNEITRALLQSDVSFPLVKEMQSNIKKIVNLEDLAAGHNkrriIEQAIFS 81
Cdd:PRK14722 46 VMQELGSLRELMEEQFAGLMWNERQRRNPVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAAD----WAQSVLA 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 82 ELCKMLDPGKPAFApkkaKASVVMFVGLQGAGKTTTCTKYAYYHQKK--GYKPALVCADTFRAGAFDQLKQNATKAKIPF 159
Cdd:PRK14722 122 ANLPVLDSEDALME----RGGVFALMGPTGVGKTTTTAKLAARCVMRfgASKVALLTTDSYRIGGHEQLRIFGKILGVPV 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 160 YGSYTESDpVKIAVEGVdtfkkENCDLIIVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMD-SSIGQAAFDQAQAFKQ 238
Cdd:PRK14722 198 HAVKDGGD-LQLALAEL-----RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNaTSHGDTLNEVVQAYRS 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 239 SVA--------VGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRllgmgdwSGFVDKLQE- 309
Cdd:PRK14722 272 AAGqpkaalpdLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLYVATKKFLLK-------SAFCAPREDs 344
|
330
....*....|....*..
gi 145324887 310 -VVPKDQQ-PELLEKLS 324
Cdd:PRK14722 345 pFVPHDDDlPAMLSALS 361
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
103-208 |
9.70e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.22 E-value: 9.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 103 VVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCADTFRAGAFDQLKQnatkakIPFYGSYTESDPVKIAVEGVDTFKKE 182
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL------IIVGGKKASGSGELRLRLALALARKL 77
|
90 100
....*....|....*....|....*.
gi 145324887 183 NCDLIIVDTSGRHKQEASLFEEMRQV 208
Cdd:smart00382 78 KPDVLILDEITSLLDAEQEALLLLLE 103
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
103-281 |
4.30e-06 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 48.83 E-value: 4.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 103 VVMFVGLQGAGKTTTCTKYA--YYHQKKGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIaVEGVDTFK 180
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAqrFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL-LERLRDYK 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 181 kencdLIIVDTSG---RHKQEASLFEEMRQVAEATKpdLVIFVMDSSIGQaaFDQAQAFKQSVAVGAVIITKMDGHAKGG 257
Cdd:PRK12727 431 -----LVLIDTAGmgqRDRALAAQLNWLRAARQVTS--LLVLPANAHFSD--LDEVVRRFAHAKPQGVVLTKLDETGRFG 501
|
170 180
....*....|....*....|....
gi 145324887 258 GALSAVAATKSPVIFIGTGEHMDE 281
Cdd:PRK12727 502 SALSVVVDHQMPITWVTDGQRVPD 525
|
|
| Grc3 |
COG1341 |
Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and ... |
98-220 |
4.84e-05 |
|
Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440952 Cd Length: 353 Bit Score: 45.01 E-value: 4.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 98 KAKASVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVCAD--------------TFRAGAFDQLKQnATKAKIPFYGSY 163
Cdd:COG1341 32 SSGPGRIMVLGPVDSGKSTLTTLLANKLLAEGLKVAIIDADvgqsdlgppttvslGLVREPVLSLSE-LKAEKLRFVGSI 110
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 145324887 164 TESDPVKIAVEG----VDTFKKENCDLIIVDTSGrHKQEASLFEEMRQVAEATKPDLVIFV 220
Cdd:COG1341 111 SPSGHLLRIVAGvkrlVERAKERGADRIVIDTDG-WVRGPAAREYKAALIEALKPDLIVVL 170
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
100-281 |
6.67e-05 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 44.94 E-value: 6.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 100 KASVVMFVGLQGAGKTTTCTKYAY--YHQKKGYKPALVCADTFRAGAFDQLKqnatkakipFYG--------SYTESDPV 169
Cdd:PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAraVIRHGADKVALLTTDSYRIGGHEQLR---------IYGkllgvsvrSIKDIADL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 170 KIAvegVDTFKKENcdLIIVDTSGRHKQEASLFEEMRQVAEA-TKPDLVIFVMDSSIGQAAFDQAQAFKQSvAVGAVIIT 248
Cdd:PRK14721 261 QLM---LHELRGKH--MVLIDTVGMSQRDQMLAEQIAMLSQCgTQVKHLLLLNATSSGDTLDEVISAYQGH-GIHGCIIT 334
|
170 180 190
....*....|....*....|....*....|...
gi 145324887 249 KMDGHAKGGGALSAVAATKSPVIFIGTGEHMDE 281
Cdd:PRK14721 335 KVDEAASLGIALDAVIRRKLVLHYVTNGQKVPE 367
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
102-223 |
6.20e-04 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 41.05 E-value: 6.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 102 SVVMFVGLQGAGKTTTCTKYAYYHQKKGYKPALVcadTFRAGAfDQLKQNATKAKIPFyGSYTESDpvkiavegvdtfkk 181
Cdd:COG0467 21 SSTLLSGPPGTGKTTLALQFLAEGLRRGEKGLYV---SFEESP-EQLLRRAESLGLDL-EEYIESG-------------- 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 145324887 182 encDLIIVDTSGRHKQE--ASLFEEMRQVAEATKPDLVIFvmDS 223
Cdd:COG0467 82 ---LLRIIDLSPEELGLdlEELLARLREAVEEFGAKRVVI--DS 120
|
|
| Era_like |
cd00880 |
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family ... |
167-251 |
7.18e-03 |
|
E. coli Ras-like protein (Era)-like GTPase; The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family.
Pssm-ID: 206646 [Multi-domain] Cd Length: 161 Bit Score: 37.23 E-value: 7.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145324887 167 DPVKIAVEgvdtfKKENCDLIIVDTSG----RHKQEAsLFEEMRQVAEATkpDLVIFVMDSSIGQaaFDQAQAFKQSVAV 242
Cdd:cd00880 34 DPVRKEWE-----LLPLGPVVLIDTPGldeeGGLGRE-RVEEARQVADRA--DLVLLVVDSDLTP--VEEEAKLGLLRER 103
|
90
....*....|..
gi 145324887 243 GA---VIITKMD 251
Cdd:cd00880 104 GKpvlLVLNKID 115
|
|
| |
