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Conserved domains on  [gi|145332373|ref|NP_001078143|]
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WEB family protein (DUF827) [Arabidopsis thaliana]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
43-288 3.04e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.94  E-value: 3.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  43 NKEVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQELGIKRNMINdekdlDLSSSVRVVTSELGVAKESIHRVAEEES 122
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-----EAQAEEYELLAELARLEQDIARLEERRR 312
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 123 ELCMLMESLKLELQNVEKAHSELKeiEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVFEAQEAKDAEEHARERL-- 200
Cdd:COG1196  313 ELEERLEELEEELAELEEELEELE--EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELle 390
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 201 ---NVAVLESDFRSLAVVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELKR 277
Cdd:COG1196  391 alrAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
                        250
                 ....*....|.
gi 145332373 278 RRKAASRILAE 288
Cdd:COG1196  471 EAALLEAALAE 481
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
43-288 3.04e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.94  E-value: 3.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  43 NKEVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQELGIKRNMINdekdlDLSSSVRVVTSELGVAKESIHRVAEEES 122
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-----EAQAEEYELLAELARLEQDIARLEERRR 312
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 123 ELCMLMESLKLELQNVEKAHSELKeiEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVFEAQEAKDAEEHARERL-- 200
Cdd:COG1196  313 ELEERLEELEEELAELEEELEELE--EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELle 390
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 201 ---NVAVLESDFRSLAVVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELKR 277
Cdd:COG1196  391 alrAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
                        250
                 ....*....|.
gi 145332373 278 RRKAASRILAE 288
Cdd:COG1196  471 EAALLEAALAE 481
PTZ00121 PTZ00121
MAEBL; Provisional
45-298 2.07e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 2.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   45 EVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQELGIKRNMINDEKDLDLSSSVRVVTSELGVAKESIHRVAEEESEL 124
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  125 CMLMESLKLELQNVEKAHSELKEIEQRERDHQAIEDLKKETKDAKtQLSLLEEELKIAvfEAQEAKDAEEHARERLNVAV 204
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIK--AAEEAKKAEEDKKKAEEAKK 1682
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  205 LESDFRSLAVVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELKRRRKAASR 284
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHL 1762
                         250
                  ....*....|....
gi 145332373  285 ILAESKMCAKSTKE 298
Cdd:PTZ00121 1763 KKEEEKKAEEIRKE 1776
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
35-291 3.96e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.43  E-value: 3.96e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373    35 EETNLCLWNKEVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQELGIKRnmindEKDLDLSSSVRVVTSELGVAKESI 114
Cdd:TIGR02168  223 RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR-----LEVSELEEEIEELQKELYALANEI 297
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   115 HRVaeeESELCMLMESLKLELQNVEKAHSELKEIEQR-ERDHQAIEDLKKETKDAKTQLSLLEEELKIAVFEAQEAKDAE 193
Cdd:TIGR02168  298 SRL---EQQKQILRERLANLERQLEELEAQLEELESKlDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   194 EHARERLN-----VAVLESDFRSLAVVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEAT 268
Cdd:TIGR02168  375 EELEEQLEtlrskVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
                          250       260
                   ....*....|....*....|...
gi 145332373   269 IVVDVELKRRRKAASRILAESKM 291
Cdd:TIGR02168  455 ELERLEEALEELREELEEAEQAL 477
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
65-288 1.70e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 40.11  E-value: 1.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   65 LELEEAKKTVEQLSQELGIKRNMINDEK----DLDLSSSVRVVTSELGVAKE-SIHRVAEEESElcmlMESLKLELQNVE 139
Cdd:pfam17380 296 MEQERLRQEKEEKAREVERRRKLEEAEKarqaEMDRQAAIYAEQERMAMERErELERIRQEERK----RELERIRQEEIA 371
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  140 KAHSELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEE----LKIAVFEAQEAKDAEEHARERLNVAVLESDFRSLAVV 215
Cdd:pfam17380 372 MEISRMRELERLQMERQQKNERVRQELEAARKVKILEEErqrkIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERV 451
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145332373  216 KESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELKRRRKAASRILAE 288
Cdd:pfam17380 452 RLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEE 524
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
43-288 3.04e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 54.94  E-value: 3.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  43 NKEVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQELGIKRNMINdekdlDLSSSVRVVTSELGVAKESIHRVAEEES 122
Cdd:COG1196  238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELE-----EAQAEEYELLAELARLEQDIARLEERRR 312
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 123 ELCMLMESLKLELQNVEKAHSELKeiEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVFEAQEAKDAEEHARERL-- 200
Cdd:COG1196  313 ELEERLEELEEELAELEEELEELE--EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELle 390
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 201 ---NVAVLESDFRSLAVVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELKR 277
Cdd:COG1196  391 alrAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
                        250
                 ....*....|.
gi 145332373 278 RRKAASRILAE 288
Cdd:COG1196  471 EAALLEAALAE 481
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
48-290 5.63e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.01  E-value: 5.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  48 KLKEKIKnaVKTKIEALLELEEAKKTVEQLSQELGIKRNMINDekdldLSSSVRVVTSELGVAKESIHRVAEEESELCML 127
Cdd:COG1196  217 ELKEELK--ELEAELLLLKLRELEAELEELEAELEELEAELEE-----LEAELAELEAELEELRLELEELELELEEAQAE 289
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 128 MESLKLELQNVEKAHSELKE-----IEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVFEAQEAKDAEEHARERLN- 201
Cdd:COG1196  290 EYELLAELARLEQDIARLEErrrelEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLe 369
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 202 -VAVLESDFRSLAVVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELKRRRK 280
Cdd:COG1196  370 aEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
                        250
                 ....*....|
gi 145332373 281 AASRILAESK 290
Cdd:COG1196  450 EEAELEEEEE 459
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
44-267 1.99e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.08  E-value: 1.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  44 KEVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQELgikrnmindekdLDLSSSVRVVTSELGVAKESIHRVAEEESE 123
Cdd:COG1196  302 QDIARLEERRRELEERLEELEEELAELEEELEELEEEL------------EELEEELEEAEEELEEAEAELAEAEEALLE 369
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 124 LcmlmesLKLELQNVEKAHSELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVFEAQEAKDAEEHARERLNVA 203
Cdd:COG1196  370 A------EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 145332373 204 VLEsdfrslavVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEA 267
Cdd:COG1196  444 LEE--------AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
PTZ00121 PTZ00121
MAEBL; Provisional
45-298 2.07e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 2.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   45 EVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQELGIKRNMINDEKDLDLSSSVRVVTSELGVAKESIHRVAEEESEL 124
Cdd:PTZ00121 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEK 1605
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  125 CMLMESLKLELQNVEKAHSELKEIEQRERDHQAIEDLKKETKDAKtQLSLLEEELKIAvfEAQEAKDAEEHARERLNVAV 204
Cdd:PTZ00121 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIK--AAEEAKKAEEDKKKAEEAKK 1682
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  205 LESDFRSLAVVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELKRRRKAASR 284
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHL 1762
                         250
                  ....*....|....
gi 145332373  285 ILAESKMCAKSTKE 298
Cdd:PTZ00121 1763 KKEEEKKAEEIRKE 1776
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
35-291 3.96e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.43  E-value: 3.96e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373    35 EETNLCLWNKEVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQELGIKRnmindEKDLDLSSSVRVVTSELGVAKESI 114
Cdd:TIGR02168  223 RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR-----LEVSELEEEIEELQKELYALANEI 297
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   115 HRVaeeESELCMLMESLKLELQNVEKAHSELKEIEQR-ERDHQAIEDLKKETKDAKTQLSLLEEELKIAVFEAQEAKDAE 193
Cdd:TIGR02168  298 SRL---EQQKQILRERLANLERQLEELEAQLEELESKlDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   194 EHARERLN-----VAVLESDFRSLAVVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEAT 268
Cdd:TIGR02168  375 EELEEQLEtlrskVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
                          250       260
                   ....*....|....*....|...
gi 145332373   269 IVVDVELKRRRKAASRILAESKM 291
Cdd:TIGR02168  455 ELERLEEALEELREELEEAEQAL 477
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
120-301 4.39e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.29  E-value: 4.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  120 EESELCMLMESLKLELQNVEKAHSELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIA-VFEAQEAKDAEEHARE 198
Cdd:COG4913   219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALrLWFAQRRLELLEAELE 298
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  199 RLN--VAVLESDFRSLAVVKESAAEELTETEalRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELK 276
Cdd:COG4913   299 ELRaeLARLEAELERLEARLDALREELDELE--AQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLP 376
                         170       180
                  ....*....|....*....|....*
gi 145332373  277 RRRKAASRILAESKMCAKSTKEVLK 301
Cdd:COG4913   377 ASAEEFAALRAEAAALLEALEEELE 401
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
43-288 1.36e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 43.51  E-value: 1.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373    43 NKEVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQELGIKRNMINDEKDLDLSSSVRVVTSELGVAKESiHRVAEEES 122
Cdd:TIGR02168  676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE-ERIAQLSK 754
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   123 ELCMLMESLKLELQNVEKAHSELKEIEQRerdhqaIEDLKKETKDAKTQLSLLEEELKIAvfeaqeakdAEEHARERLNV 202
Cdd:TIGR02168  755 ELTELEAEIEELEERLEEAEEELAEAEAE------IEELEAQIEQLKEELKALREALDEL---------RAELTLLNEEA 819
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   203 AVLESDFRSLAVVKESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELKRRRKAA 282
Cdd:TIGR02168  820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899

                   ....*.
gi 145332373   283 SRILAE 288
Cdd:TIGR02168  900 SEELRE 905
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
50-250 4.51e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.82  E-value: 4.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   50 KEKIKNAVKTKIEALLELEEAKKTVEQLSQELgikrnmindekdlDLSSSVRVVTSELGVAKESIHRVAEEESELcmlmE 129
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALEAEL-------------DALQERREALQRLAEYSWDEIDVASAEREI----A 671
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  130 SLKLELQNVEKAHSELKEIEQRERD-HQAIEDLKKETKDAKTQLSLLEEELKIAVFEAQEAKDAEEHARERLNVAV---L 205
Cdd:COG4913   672 ELEAELERLDASSDDLAALEEQLEElEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELralL 751
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 145332373  206 ESDFRSLAVvkesAAEELTETEALRACRDETLKTLEMSEREIEDI 250
Cdd:COG4913   752 EERFAAALG----DAVERELRENLEERIDALRARLNRAEEELERA 792
PTZ00121 PTZ00121
MAEBL; Provisional
26-311 7.00e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 7.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   26 KGQEEGVLVEETNLCLWNKEVNKLKEKIKNAVKTKIEALLELEEAKKTVEQLSQElgikrnminDEKDLDLSSSVRVVTS 105
Cdd:PTZ00121 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK---------EAEEKKKAEELKKAEE 1657
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  106 ELGVAKESIHRVAEEESELCmlmESLKLELQNVEKAHSELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEELKIAVFE 185
Cdd:PTZ00121 1658 ENKIKAAEEAKKAEEDKKKA---EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  186 AQeaKDAEEHARERLNVAVLESDFRSLAVVKESAAEELTETEALRAC------RDETLKTLEMSEREIEDIKAATQDALk 259
Cdd:PTZ00121 1735 AK--KEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAvieeelDEEDEKRRMEVDKKIKDIFDNFANII- 1811
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 145332373  260 kaEMAQEATIVVDVELKRRRKAASRILAESKMCAKSTKEVLKSKPRSSSKEG 311
Cdd:PTZ00121 1812 --EGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENG 1861
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
65-288 1.70e-03

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 40.11  E-value: 1.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373   65 LELEEAKKTVEQLSQELGIKRNMINDEK----DLDLSSSVRVVTSELGVAKE-SIHRVAEEESElcmlMESLKLELQNVE 139
Cdd:pfam17380 296 MEQERLRQEKEEKAREVERRRKLEEAEKarqaEMDRQAAIYAEQERMAMERErELERIRQEERK----RELERIRQEEIA 371
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  140 KAHSELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEE----LKIAVFEAQEAKDAEEHARERLNVAVLESDFRSLAVV 215
Cdd:pfam17380 372 MEISRMRELERLQMERQQKNERVRQELEAARKVKILEEErqrkIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERV 451
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 145332373  216 KESAAEELTETEALRACRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELKRRRKAASRILAE 288
Cdd:pfam17380 452 RLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEE 524
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
60-262 6.41e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 37.98  E-value: 6.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373  60 KIEALLELEEAKKTVEQLsQELGI-----KRNMINDEKDLDLSS----------SVRVVTSELGVAKESIHRVAEEESEL 124
Cdd:PRK05771   8 KVLIVTLKSYKDEVLEAL-HELGVvhiedLKEELSNERLRKLRSlltklsealdKLRSYLPKLNPLREEKKKVSVKSLEE 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332373 125 cmLMESLKLELQNVEKA----HSELKEIEQRERDHQAIEDLKKETKDAKTQLSLLEEE--LKIAVFEAQEAKDAEEHARE 198
Cdd:PRK05771  87 --LIKDVEEELEKIEKEikelEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFkyVSVFVGTVPEDKLEELKLES 164
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 145332373 199 RLNVAVLESDFRS-----LAVVKESAAEELTETEALRACRDET------LKTLEMSEREIEDIKAATQDALKKAE 262
Cdd:PRK05771 165 DVENVEYISTDKGyvyvvVVVLKELSDEVEEELKKLGFERLELeeegtpSELIREIKEELEEIEKERESLLEELK 239
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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