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Conserved domains on  [gi|145332381|ref|NP_001078147|]
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myb domain protein 26 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-239 9.26e-75

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 238.34  E-value: 9.26e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381   1 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIE 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381  81 LHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLMSHHHHGHHHHHLSSMASlltnlpyHNGFNPTTvDDESSRFMSN 160
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVEN-------GEDKNPPT-DDKSDKASSV 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381 161 IITNTN----PNFITPSHLSLPSPHVMTPLMFPTSREGD--FKFLTTNNPNQSHHhdnnhynnlDILSPTPT-------I 227
Cdd:PLN03091 153 VSNELNllkaDNSKPLAALQEKRSSSISPAGYQLEVESSssSKINNSNNNNHSNS---------NLMTPTPNkdffldrF 223

                        250
                 ....*....|..
gi 145332381 228 NNHHQPSLSSCP 239
Cdd:PLN03091 224 TTSHESSTTSCR 235
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-239 9.26e-75

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 238.34  E-value: 9.26e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381   1 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIE 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381  81 LHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLMSHHHHGHHHHHLSSMASlltnlpyHNGFNPTTvDDESSRFMSN 160
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVEN-------GEDKNPPT-DDKSDKASSV 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381 161 IITNTN----PNFITPSHLSLPSPHVMTPLMFPTSREGD--FKFLTTNNPNQSHHhdnnhynnlDILSPTPT-------I 227
Cdd:PLN03091 153 VSNELNllkaDNSKPLAALQEKRSSSISPAGYQLEVESSssSKINNSNNNNHSNS---------NLMTPTPNkdffldrF 223

                        250
                 ....*....|..
gi 145332381 228 NNHHQPSLSSCP 239
Cdd:PLN03091 224 TTSHESSTTSCR 235
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-110 1.06e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 70.23  E-value: 1.06e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 145332381   67 RGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNS 110
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 9-113 1.67e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 77.52  E-value: 1.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381   9 KQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLqRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNR 88
Cdd:COG5147   15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                         90       100
                 ....*....|....*....|....*
gi 145332381  89 WAQIAKHLPGRTDNEVKNFWNSSIK 113
Cdd:COG5147   94 WSTIADYKDRRTAQQCVERYVNTLE 118
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 2.90e-13

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 63.40  E-value: 2.90e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 145332381    14 RGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLqRCGKSCRLRWINYLRP 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-61 6.18e-13

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 62.59  E-value: 6.18e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 145332381  17 WSPEEDEKLINYINSYGHGCWSSVPKHAGLqRCGKSCRLRWINYL 61
Cdd:cd00167    2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-239 9.26e-75

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 238.34  E-value: 9.26e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381   1 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIE 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381  81 LHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLMSHHHHGHHHHHLSSMASlltnlpyHNGFNPTTvDDESSRFMSN 160
Cdd:PLN03091  81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVEN-------GEDKNPPT-DDKSDKASSV 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381 161 IITNTN----PNFITPSHLSLPSPHVMTPLMFPTSREGD--FKFLTTNNPNQSHHhdnnhynnlDILSPTPT-------I 227
Cdd:PLN03091 153 VSNELNllkaDNSKPLAALQEKRSSSISPAGYQLEVESSssSKINNSNNNNHSNS---------NLMTPTPNkdffldrF 223

                        250
                 ....*....|..
gi 145332381 228 NNHHQPSLSSCP 239
Cdd:PLN03091 224 TTSHESSTTSCR 235
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 6-117 7.13e-47

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 159.86  E-value: 7.13e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381   6 CCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSIL 85
Cdd:PLN03212  17 CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLL 96

                         90       100       110
                 ....*....|....*....|....*....|..
gi 145332381  86 GNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLM 117
Cdd:PLN03212  97 GNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLL 128
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-110 1.06e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 70.23  E-value: 1.06e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 145332381   67 RGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNS 110
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 9-113 1.67e-15

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 77.52  E-value: 1.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145332381   9 KQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLqRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNR 88
Cdd:COG5147   15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                         90       100
                 ....*....|....*....|....*
gi 145332381  89 WAQIAKHLPGRTDNEVKNFWNSSIK 113
Cdd:COG5147   94 WSTIADYKDRRTAQQCVERYVNTLE 118
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-61 1.51e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.14  E-value: 1.51e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 145332381   14 RGLWSPEEDEKLINYINSYGhGCWSSVPKHAGLqRCGKSCRLRWINYL 61
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLPG-RTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 2.90e-13

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 63.40  E-value: 2.90e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 145332381    14 RGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLqRCGKSCRLRWINYLRP 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 17-61 6.18e-13

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 62.59  E-value: 6.18e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 145332381  17 WSPEEDEKLINYINSYGHGCWSSVPKHAGLqRCGKSCRLRWINYL 61
Cdd:cd00167    2 WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
67-114 3.83e-12

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 60.32  E-value: 3.83e-12
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 145332381    67 RGSFSPQEAALIIELHSILG-NRWAQIAKHLPGRTDNEVKNFWNSSIKK 114
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-74 2.41e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 58.48  E-value: 2.41e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 145332381   17 WSPEEDEKLINYINSYGHGcWSSVPKHAGlQRCGKSCRLRWINYLRPDLKRGSFSPQE 74
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGND-WKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEE 56
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 69-109 5.03e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 57.20  E-value: 5.03e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 145332381  69 SFSPQEAALIIELHSILG-NRWAQIAKHLPGRTDNEVKNFWN 109
Cdd:cd00167    1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWR 42
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 70-116 3.12e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 44.22  E-value: 3.12e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 145332381   70 FSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKL 116
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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