|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
25-664 |
3.22e-101 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 328.73 E-value: 3.22e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 25 SSNQLVNLYSKSGLLREARNVFDEML----ERNVYSW-----------------------------------NAVIAAYV 65
Cdd:PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLwagvRPDVYTFpcvlrtcggipdlargrevhahvvrfgfeldvdvvNALITMYV 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 66 KFNNVKEARELFESdNCERDLITYNTLLSGFAKTDGCEsEAIEMFGEMHRKEKDDiwiDDFTVTTMVKLSAKLTNVFYGE 145
Cdd:PLN03077 234 KCGDVVSARLVFDR-MPRRDCISWNAMISGYFENGECL-EGLELFFTMRELSVDP---DLMTITSVISACELLGDERLGR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 146 QLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGScvefvdsvarnamiaaycregdidkalsvfwrnpELNDT 225
Cdd:PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM----------------------------------ETKDA 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 226 ISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVY 305
Cdd:PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 306 CKCGNMKyaesahllygfgnlysassmivgyssqgkmvEAKRLFDSLSEKNLVVWTAMFLGY-LNLRQPDSVLELaRAFI 384
Cdd:PLN03077 435 SKCKCID-------------------------------KALEVFHNIPEKDVISWTSIIAGLrLNNRCFEALIFF-RQML 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 385 AneTNTPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAERIFDSSfERDTVMYNA 464
Cdd:PLN03077 483 L--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNI 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 465 MIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGKAY 544
Cdd:PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 545 RLDKAIELMEGIdQVEKDAVILGAFLNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQIANAYASSGRWDEMQRIRHQMR 624
Cdd:PLN03077 640 KLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 334185448 625 GKELEIFSGCSWANIDKQFHMFTSSDISHYETEAIYAMLH 664
Cdd:PLN03077 719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
192-672 |
8.74e-77 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 259.80 E-value: 8.74e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 192 DSVARNAMIAAYCREGDIDKALSVFWRNPELNdTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLS 271
Cdd:PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 272 SLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKyaesahllygfgnlysassmivgyssqgkmvEAKRLFDS 351
Cdd:PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE-------------------------------DARCVFDG 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 352 LSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTpDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLV 431
Cdd:PLN03081 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 432 TAFVDMYSKCGNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGLVL 511
Cdd:PLN03081 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 512 EGEKYFKSMIEAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIdQVEKDAVILGAFLNACSWNKNTELVKEVEEKLLV 591
Cdd:PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 592 IEGSNGSRYIQIANAYASSGRWDEMQRIRHQMRGKELEIFSGCSWANIDKQFHMFTSSDISHYETEAIYAMLHFVTKDLS 671
Cdd:PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602
|
.
gi 334185448 672 E 672
Cdd:PLN03081 603 E 603
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
197-571 |
4.84e-46 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 175.81 E-value: 4.84e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 197 NAMIAAYCREGDIDKALSVFWRNPElNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLSSLKSL 276
Cdd:PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPE-RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 277 KIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMkyaesahllygfgnlysassmivgyssqgkmVEAKRLFDSLSEKN 356
Cdd:PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV-------------------------------VSARLVFDRMPRRD 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 357 LVVWTAMFLGYLNLRQPDSVLELARAFIANETNtPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVD 436
Cdd:PLN03077 253 CISWNAMISGYFENGECLEGLELFFTMRELSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 437 MYSKCGNVEYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGLVLEGeky 516
Cdd:PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG--- 408
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334185448 517 fksmIEAYNISPETGHYT------CMIDLYGKAYRLDKAIELMEGI---DQVEKDAVILGAFLN 571
Cdd:PLN03077 409 ----VKLHELAERKGLISyvvvanALIEMYSKCKCIDKALEVFHNIpekDVISWTSIIAGLRLN 468
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
229-639 |
9.59e-26 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 113.02 E-value: 9.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 229 NTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLSSLKSLKIGKEVHARVLKngsysnKFVSSGIvdvycKC 308
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS------SHPSLGV-----RL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 309 GNmkyaesAHLlygfgnlysasSMIVGYssqGKMVEAKRLFDSLSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANET 388
Cdd:PLN03077 124 GN------AML-----------SMFVRF---GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 389 NtPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAERIFDSSFERDTVMYNAMIAG 468
Cdd:PLN03077 184 R-PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISG 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 469 CAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACR----------------HRGLVL-------------------EG 513
Cdd:PLN03077 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACEllgderlgremhgyvvKTGFAVdvsvcnsliqmylslgswgEA 342
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 514 EKYFKSMIEAYNISpetghYTCMIDLYGKAYRLDKAIE---LMEgIDQVEKDAVILGAFLNAC----SWNKNTELVKEVE 586
Cdd:PLN03077 343 EKVFSRMETKDAVS-----WTAMISGYEKNGLPDKALEtyaLME-QDNVSPDEITIASVLSACaclgDLDVGVKLHELAE 416
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 334185448 587 EKLLViegsngsRYIQIANA----YASSGRWDEMQRIRHQMRGKELeifsgCSWANI 639
Cdd:PLN03077 417 RKGLI-------SYVVVANAliemYSKCKCIDKALEVFHNIPEKDV-----ISWTSI 461
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
11-267 |
2.12e-13 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 73.73 E-value: 2.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 11 HIRSIKSGSTLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAY-------------------------- 64
Cdd:PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYfengecleglelfftmrelsvdpdlm 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 65 ---------------------------------VKFNN-----------VKEARELFESDNCeRDLITYNTLLSGFAKtD 100
Cdd:PLN03077 290 titsvisacellgderlgremhgyvvktgfavdVSVCNsliqmylslgsWGEAEKVFSRMET-KDAVSWTAMISGYEK-N 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 101 GCESEAIEMFGEMhrkEKDDIWIDDFTVTTMVKLSAKLTNVFYGEQLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVC 180
Cdd:PLN03077 368 GLPDKALETYALM---EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 181 NIF--------------------NGSCVE------------------FVDSVAR-------------------------- 196
Cdd:PLN03077 445 EVFhnipekdviswtsiiaglrlNNRCFEaliffrqmlltlkpnsvtLIAALSAcarigalmcgkeihahvlrtgigfdg 524
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334185448 197 ---NAMIAAYCREGDIDKALSVFwrNPELNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVL 267
Cdd:PLN03077 525 flpNALLDLYVRCGRMNYAWNQF--NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
4-254 |
1.33e-11 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 67.95 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 4 LKDGFLHHIRSIKSGSTLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYvKFNNvkearelfesdnce 83
Cdd:PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL-RLNN-------------- 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 84 RDLityntllsgfaktdgcesEAIEMFGEMHRKEKDDiwidDFTVTTMVKLSAKLTNVFYGEQLHGVLVKTGNDGTKFAV 163
Cdd:PLN03077 470 RCF------------------EALIFFRQMLLTLKPN----SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 164 SSLIHMYSKCGKFKEVCNIFNgscVEFVDSVARNAMIAAYCREGDIDKALSVFWRNPELN---DTISWNTLIAGYAQNGY 240
Cdd:PLN03077 528 NALLDLYVRCGRMNYAWNQFN---SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGvnpDEVTFISLLCACSRSGM 604
|
250
....*....|....
gi 334185448 241 EEEALKMAVSMEEN 254
Cdd:PLN03077 605 VTQGLEYFHSMEEK 618
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
11-78 |
3.89e-11 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 66.43 E-value: 3.89e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334185448 11 HIRSIKSGSTLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAVIAAYVKFNNVKEARELFE 78
Cdd:PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
423-574 |
1.41e-09 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 61.43 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 423 GILMDKKLVTAFVDMYSKCGNVEYAERIF----DSSFERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFM 498
Cdd:PLN03218 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFhemvNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334185448 499 ALLSACRHRGLVLEGEKYFKSM-IEAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQ--VEKDAVILGAFLNACS 574
Cdd:PLN03218 547 ALISACGQSGAVDRAFDVLAEMkAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEynIKGTPEVYTIAVNSCS 625
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
578-636 |
1.48e-09 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 54.47 E-value: 1.48e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 334185448 578 NTELVKEVEEKLLVIEGSNGSRYIQIANAYASSGRWDEMQRIRHQMRGKELEIFSGCSW 636
Cdd:pfam20431 3 NVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSW 61
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
52-98 |
5.24e-09 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 52.37 E-value: 5.24e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 334185448 52 RNVYSWNAVIAAYVKFNNVKEARELFE---SDNCERDLITYNTLLSGFAK 98
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNemkKRGVKPNVYTYTILINGLCK 50
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
457-504 |
3.47e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 47.36 E-value: 3.47e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 334185448 457 RDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSAC 504
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
224-270 |
3.11e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 41.58 E-value: 3.11e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 334185448 224 DTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVL 270
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
325-556 |
4.41e-05 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 46.79 E-value: 4.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 325 NLYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLvvwtamflgylnlrQPDSVL------------ELARAF-----IANE 387
Cdd:PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV--------------KPDRVVfnalisacgqsgAVDRAFdvlaeMKAE 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 388 TN--TPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAERIFDssferdtvmynam 465
Cdd:PLN03218 572 THpiDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD------------- 638
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 466 iagcahhgheaksfqhfeDMTEGGFKPDEITFMALLSACRHRGLVlegEKYFKSMIEA--YNISPETGHYTCMIDLYGKA 543
Cdd:PLN03218 639 ------------------DMKKKGVKPDEVFFSALVDVAGHAGDL---DKAFEILQDArkQGIKLGTVSYSSLMGACSNA 697
|
250
....*....|...
gi 334185448 544 YRLDKAIELMEGI 556
Cdd:PLN03218 698 KNWKKALELYEDI 710
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
314-574 |
6.86e-05 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 46.41 E-value: 6.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 314 AESAHLLYGFGNLYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGY-----LNLRQPDSVLELARAFIANET 388
Cdd:PLN03218 289 REELYTFYEEKQSRAKSSRLPNVKGLRKGVSSATNSLSLDKKNNGVKDAELPGQssgqaASDVEEENSLAAYNGGVSGKR 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 389 NTPD------SLVMVSVLGAC-SLQAYMEpgkeihghslRTGIL-MDKKLVTAFVDMYSKCGNVEYAERIfdSSFERDTV 460
Cdd:PLN03218 369 KSPEyidaynRLLRDGRIKDCiDLLEDME----------KRGLLdMDKIYHAKFFKACKKQRAVKEAFRF--AKLIRNPT 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 461 M--YNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGLVLEGEKYFKSMIEAyNISPETGHYTCMID 538
Cdd:PLN03218 437 LstFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALID 515
|
250 260 270
....*....|....*....|....*....|....*....
gi 334185448 539 LYGKAYRLDKAIELMeGI---DQVEKDAVILGAFLNACS 574
Cdd:PLN03218 516 GCARAGQVAKAFGAY-GImrsKNVKPDRVVFNALISACG 553
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
455-507 |
4.06e-04 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 38.88 E-value: 4.06e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 334185448 455 FERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHR 507
Cdd:pfam13812 11 IQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
80-113 |
4.58e-04 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 38.10 E-value: 4.58e-04
10 20 30
....*....|....*....|....*....|....
gi 334185448 80 DNCERDLITYNTLLSGFAKtDGCESEAIEMFGEM 113
Cdd:pfam12854 1 KGLKPDVVTYNTLINGLCR-AGRVDEAFELLDEM 33
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
226-256 |
8.26e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.06 E-value: 8.26e-04
10 20 30
....*....|....*....|....*....|.
gi 334185448 226 ISWNTLIAGYAQNGYEEEALKMAVSMEENGL 256
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_long |
pfam17177 |
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ... |
435-554 |
9.89e-04 |
|
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.
Pssm-ID: 407303 [Multi-domain] Cd Length: 212 Bit Score: 41.23 E-value: 9.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334185448 435 VDMYSKCGNVEYAERIFDSSFERDTVM----YNAMI-----AGCAHHGHE----AKSFQHFEDMTEGGFKPDEITFMALL 501
Cdd:pfam17177 18 LDKCSKHADATGALALYDAAKAEGVRLaqyhYNVLLylcskAADATDLKPqlaaDRGFEVFEAMKAQGVSPNEATYTAVA 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 334185448 502 SACRHRGLVLEGEKYFKSMiEAYNISPETGHYTCMIDLYGKAYRLDKAIELME 554
Cdd:pfam17177 98 RLAAAKGDGDLAFDLVKEM-EAAGVSPRLRSYSPALHAYCEAGDADKAYEVEE 149
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
192-237 |
2.45e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 36.19 E-value: 2.45e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 334185448 192 DSVARNAMIAAYCREGDIDKALSVF-----WR-NPelnDTISWNTLIAGYAQ 237
Cdd:pfam13041 2 DVVTYNTLINGYCKKGKVEEAFKLFnemkkRGvKP---NVYTYTILINGLCK 50
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
24-54 |
2.66e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 35.90 E-value: 2.66e-03
10 20 30
....*....|....*....|....*....|.
gi 334185448 24 VSSNQLVNLYSKSGLLREARNVFDEMLERNV 54
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
87-116 |
3.72e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 35.13 E-value: 3.72e-03
10 20 30
....*....|....*....|....*....|
gi 334185448 87 ITYNTLLSGFAKtDGCESEAIEMFGEMHRK 116
Cdd:pfam01535 1 VTYNSLISGYCK-NGKLEEALELFKEMKEK 29
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
226-260 |
5.43e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 35.12 E-value: 5.43e-03
10 20 30
....*....|....*....|....*....|....*
gi 334185448 226 ISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDE 260
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
460-494 |
8.89e-03 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 34.35 E-value: 8.89e-03
10 20 30
....*....|....*....|....*....|....*..
gi 334185448 460 VMYNAMIAGCAHHG--HEAKSFqhFEDMTEGGFKPDE 494
Cdd:TIGR00756 1 VTYNTLIDGLCKAGrvEEALEL--FKEMKERGIEPDV 35
|
|
| |
