PGR5-LIKE A [Arabidopsis thaliana]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| Ribosomal_S27e super family | cl00897 | Ribosomal protein S27; |
265-317 | 3.49e-03 | ||
Ribosomal protein S27; The actual alignment was detected with superfamily member PRK00415: Pssm-ID: 445165 Cd Length: 59 Bit Score: 35.26 E-value: 3.49e-03
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| Name | Accession | Description | Interval | E-value | ||
| rps27e | PRK00415 | 30S ribosomal protein S27e; Reviewed |
265-317 | 3.49e-03 | ||
30S ribosomal protein S27e; Reviewed Pssm-ID: 179013 Cd Length: 59 Bit Score: 35.26 E-value: 3.49e-03
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| CPxCG_zf | pfam19769 | CPxCG-related zinc finger; This family includes small CPxCG-related zinc finger archaeal ... |
269-302 | 7.70e-03 | ||
CPxCG-related zinc finger; This family includes small CPxCG-related zinc finger archaeal proteins, which are typically between 200 and 221 amino acids in length. They are likely to bind DNA and to be potential transcriptional regulators. These zinc fingers are characterized by the specific CPxCG pattern (variants CPxCx and CxxCG) and a second Cys/His pattern potentially more general, being 7-40 residues apart, forming a zinc finger motif. This family contains the specific CxxCG motif and the Cys motif (CPxCx) at the N-terminal. A member of this family, the Nif-regulating protein A, contains the patterns CxxCG and HxxxH (the latter unique to this protein, located 24 residues away from the CxxCG pattern) to form the zinc finger motif. It is a DNA-binding protein that enhances the transcription of the nitrogen fixation (nif) operon under nitrogen-limited conditions. Pssm-ID: 466179 Cd Length: 184 Bit Score: 36.78 E-value: 7.70e-03
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| ZnF_C2C2 | smart00440 | C2C2 Zinc finger; Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and ... |
268-301 | 9.06e-03 | ||
C2C2 Zinc finger; Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases. Pssm-ID: 128717 [Multi-domain] Cd Length: 40 Bit Score: 33.46 E-value: 9.06e-03
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| Name | Accession | Description | Interval | E-value | ||
| rps27e | PRK00415 | 30S ribosomal protein S27e; Reviewed |
265-317 | 3.49e-03 | ||
30S ribosomal protein S27e; Reviewed Pssm-ID: 179013 Cd Length: 59 Bit Score: 35.26 E-value: 3.49e-03
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| CPxCG_zf | pfam19769 | CPxCG-related zinc finger; This family includes small CPxCG-related zinc finger archaeal ... |
269-302 | 7.70e-03 | ||
CPxCG-related zinc finger; This family includes small CPxCG-related zinc finger archaeal proteins, which are typically between 200 and 221 amino acids in length. They are likely to bind DNA and to be potential transcriptional regulators. These zinc fingers are characterized by the specific CPxCG pattern (variants CPxCx and CxxCG) and a second Cys/His pattern potentially more general, being 7-40 residues apart, forming a zinc finger motif. This family contains the specific CxxCG motif and the Cys motif (CPxCx) at the N-terminal. A member of this family, the Nif-regulating protein A, contains the patterns CxxCG and HxxxH (the latter unique to this protein, located 24 residues away from the CxxCG pattern) to form the zinc finger motif. It is a DNA-binding protein that enhances the transcription of the nitrogen fixation (nif) operon under nitrogen-limited conditions. Pssm-ID: 466179 Cd Length: 184 Bit Score: 36.78 E-value: 7.70e-03
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| ZnF_C2C2 | smart00440 | C2C2 Zinc finger; Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and ... |
268-301 | 9.06e-03 | ||
C2C2 Zinc finger; Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases. Pssm-ID: 128717 [Multi-domain] Cd Length: 40 Bit Score: 33.46 E-value: 9.06e-03
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| Blast search parameters | ||||
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