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Conserved domains on  [gi|145334685|ref|NP_001078688|]
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RNA binding Plectin/S10 domain-containing protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
S10_plectin super family cl02102
Plectin/S10 domain; This presumed domain is found at the N-terminus of some isoforms of the ...
 1-49 8.11e-31

Plectin/S10 domain; This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.


The actual alignment was detected with superfamily member pfam03501:

Pssm-ID: 445667  Cd Length: 92  Bit Score: 105.68  E-value: 8.11e-31
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 145334685    1 MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQ 49
Cdd:pfam03501  44 MQSLKSRGYVKEQFAWRHYYWYLTNEGIEYLREYLHLPAEIVPATLKRS 92
 
Name Accession Description Interval E-value
S10_plectin pfam03501
Plectin/S10 domain; This presumed domain is found at the N-terminus of some isoforms of the ...
 1-49 8.11e-31

Plectin/S10 domain; This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.


Pssm-ID: 427337  Cd Length: 92  Bit Score: 105.68  E-value: 8.11e-31
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 145334685    1 MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQ 49
Cdd:pfam03501  44 MQSLKSRGYVKEQFAWRHYYWYLTNEGIEYLREYLHLPAEIVPATLKRS 92
PTZ00034 PTZ00034
40S ribosomal protein S10; Provisional
 1-90 5.54e-24

40S ribosomal protein S10; Provisional


Pssm-ID: 173331  Cd Length: 124  Bit Score: 89.31  E-value: 5.54e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334685   1 MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPfggggdrprgpprgDGERRFGDRD 80
Cdd:PTZ00034  47 MRSLKSRGLVKEQFAWQHYYYYLTDEGIEYLRTYLHLPPDVFPATHKKKSVNFERK--------------TEEEGSRGGR 112

                         90
                 ....*....|
gi 145334685  81 GYRGGPKSGG 90
Cdd:PTZ00034 113 GGRGRGRGYG 122
COG5045 COG5045
Ribosomal protein S10E [Translation, ribosomal structure and biogenesis];
1-56 8.87e-17

Ribosomal protein S10E [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227378  Cd Length: 105  Bit Score: 70.34  E-value: 8.87e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 145334685   1 MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRP 56
Cdd:COG5045   46 MQSLISYGYVKTIHVWRHSYYTLTPEGVEYLREYLVLPDEGVPSTEAPAVSPTQRP 101
 
Name Accession Description Interval E-value
S10_plectin pfam03501
Plectin/S10 domain; This presumed domain is found at the N-terminus of some isoforms of the ...
 1-49 8.11e-31

Plectin/S10 domain; This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.


Pssm-ID: 427337  Cd Length: 92  Bit Score: 105.68  E-value: 8.11e-31
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 145334685    1 MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQ 49
Cdd:pfam03501  44 MQSLKSRGYVKEQFAWRHYYWYLTNEGIEYLREYLHLPAEIVPATLKRS 92
PTZ00034 PTZ00034
40S ribosomal protein S10; Provisional
 1-90 5.54e-24

40S ribosomal protein S10; Provisional


Pssm-ID: 173331  Cd Length: 124  Bit Score: 89.31  E-value: 5.54e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 145334685   1 MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPfggggdrprgpprgDGERRFGDRD 80
Cdd:PTZ00034  47 MRSLKSRGLVKEQFAWQHYYYYLTDEGIEYLRTYLHLPPDVFPATHKKKSVNFERK--------------TEEEGSRGGR 112

                         90
                 ....*....|
gi 145334685  81 GYRGGPKSGG 90
Cdd:PTZ00034 113 GGRGRGRGYG 122
COG5045 COG5045
Ribosomal protein S10E [Translation, ribosomal structure and biogenesis];
1-56 8.87e-17

Ribosomal protein S10E [Translation, ribosomal structure and biogenesis];


Pssm-ID: 227378  Cd Length: 105  Bit Score: 70.34  E-value: 8.87e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 145334685   1 MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRP 56
Cdd:COG5045   46 MQSLISYGYVKTIHVWRHSYYTLTPEGVEYLREYLVLPDEGVPSTEAPAVSPTQRP 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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