NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|160358383|ref|NP_001095083|]
View 

uncharacterized protein LOC670533 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NosR super family cl42688
Transcriptional regulator NosR of nitric oxide reductase [Transcription];
122-179 2.38e-03

Transcriptional regulator NosR of nitric oxide reductase [Transcription];


The actual alignment was detected with superfamily member COG3901:

Pssm-ID: 443108 [Multi-domain]  Cd Length: 713  Bit Score: 37.99  E-value: 2.38e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 160358383 122 RCCISSCCQPCCRPSCCQSSCCKPCCQPFCLNLCCQPacsgpvTCTRTCYQPTCVCVP 179
Cdd:COG3901  630 RRRECCCGCCCCCCKCCCIVIIIDGIIIINECCCCCC------LCCRRCQDDPLCPPR 681
Keratin_B2 super family cl37504
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 64-177 6.33e-03

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


The actual alignment was detected with superfamily member pfam01500:

Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 35.92  E-value: 6.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160358383   64 CCVSSCCRTPCCQPCCCVSSCCQPCCQPSCCQSSCCQPSCCQSSCCQPSCCQSSCCQPRCCISSCCQPCCRPSCCQSSCC 143
Cdd:pfam01500  39 CCQTSCCQPTTFQSSCCRPTCQPCCQTSCCQPTCCQTSSCQTGCGGIGYGQEGSSGAVSSRTRWCRPDCRVEGTCLPPCC 118

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 160358383  144 KPCCQP--FCLNLCCQPACSGPVTCTRTCYQPTCVC 177
Cdd:pfam01500 119 VVSCTPptCCQLHHAQASCCRPSYCGQSCCRPACCC 154
 
Name Accession Description Interval E-value
NosR COG3901
Transcriptional regulator NosR of nitric oxide reductase [Transcription];
122-179 2.38e-03

Transcriptional regulator NosR of nitric oxide reductase [Transcription];


Pssm-ID: 443108 [Multi-domain]  Cd Length: 713  Bit Score: 37.99  E-value: 2.38e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 160358383 122 RCCISSCCQPCCRPSCCQSSCCKPCCQPFCLNLCCQPacsgpvTCTRTCYQPTCVCVP 179
Cdd:COG3901  630 RRRECCCGCCCCCCKCCCIVIIIDGIIIINECCCCCC------LCCRRCQDDPLCPPR 681
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
132-181 2.53e-03

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 34.67  E-value: 2.53e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 160358383  132 CCRPSCCQSSCCKPCCqpfclnlcCQPACSGPVTCTRTCYQPTCvCVPGC 181
Cdd:pfam13885   1 CCQPSCCQPSCCQPSC--------CQPSCCQPSCCQPSCCRPSC-CRSSC 41
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 64-177 6.33e-03

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 35.92  E-value: 6.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160358383   64 CCVSSCCRTPCCQPCCCVSSCCQPCCQPSCCQSSCCQPSCCQSSCCQPSCCQSSCCQPRCCISSCCQPCCRPSCCQSSCC 143
Cdd:pfam01500  39 CCQTSCCQPTTFQSSCCRPTCQPCCQTSCCQPTCCQTSSCQTGCGGIGYGQEGSSGAVSSRTRWCRPDCRVEGTCLPPCC 118

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 160358383  144 KPCCQP--FCLNLCCQPACSGPVTCTRTCYQPTCVC 177
Cdd:pfam01500 119 VVSCTPptCCQLHHAQASCCRPSYCGQSCCRPACCC 154
 
Name Accession Description Interval E-value
NosR COG3901
Transcriptional regulator NosR of nitric oxide reductase [Transcription];
122-179 2.38e-03

Transcriptional regulator NosR of nitric oxide reductase [Transcription];


Pssm-ID: 443108 [Multi-domain]  Cd Length: 713  Bit Score: 37.99  E-value: 2.38e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 160358383 122 RCCISSCCQPCCRPSCCQSSCCKPCCQPFCLNLCCQPacsgpvTCTRTCYQPTCVCVP 179
Cdd:COG3901  630 RRRECCCGCCCCCCKCCCIVIIIDGIIIINECCCCCC------LCCRRCQDDPLCPPR 681
Keratin_B2_2 pfam13885
Keratin, high sulfur B2 protein;
132-181 2.53e-03

Keratin, high sulfur B2 protein;


Pssm-ID: 464017 [Multi-domain]  Cd Length: 45  Bit Score: 34.67  E-value: 2.53e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 160358383  132 CCRPSCCQSSCCKPCCqpfclnlcCQPACSGPVTCTRTCYQPTCvCVPGC 181
Cdd:pfam13885   1 CCQPSCCQPSCCQPSC--------CQPSCCQPSCCQPSCCRPSC-CRSSC 41
Keratin_B2 pfam01500
Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized ...
 64-177 6.33e-03

Keratin, high sulfur B2 protein; High sulfur proteins are cysteine-rich proteins synthesized during the differentiation of hair matrix cells, and form hair fibres in association with hair keratin intermediate filaments. This family has been divided up into four regions, with the second region containing 8 copies of a short repeat. This family is also known as B2 or KAP1.


Pssm-ID: 366678 [Multi-domain]  Cd Length: 161  Bit Score: 35.92  E-value: 6.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160358383   64 CCVSSCCRTPCCQPCCCVSSCCQPCCQPSCCQSSCCQPSCCQSSCCQPSCCQSSCCQPRCCISSCCQPCCRPSCCQSSCC 143
Cdd:pfam01500  39 CCQTSCCQPTTFQSSCCRPTCQPCCQTSCCQPTCCQTSSCQTGCGGIGYGQEGSSGAVSSRTRWCRPDCRVEGTCLPPCC 118

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 160358383  144 KPCCQP--FCLNLCCQPACSGPVTCTRTCYQPTCVC 177
Cdd:pfam01500 119 VVSCTPptCCQLHHAQASCCRPSYCGQSCCRPACCC 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH