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Conserved domains on  [gi|157787143|ref|NP_001099206|]
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cysteine-rich hydrophobic domain-containing protein 2 [Rattus norvegicus]

Protein Classification

ERF4 family protein( domain architecture ID 1326)

ERF4 family protein similar to Homo sapiens cysteine-rich hydrophobic domain-containing protein 2 (CHIC2)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Erf4 super family cl10939
Golgin subfamily A member 7/ERF4 family; This family of proteins includes Golgin subfamily A ...
 46-134 1.86e-03

Golgin subfamily A member 7/ERF4 family; This family of proteins includes Golgin subfamily A member 7 proteins as well as Ras modification protein ERF4.


The actual alignment was detected with superfamily member pfam10256:

Pssm-ID: 463029  Cd Length: 116  Bit Score: 36.31  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157787143   46 KFESEFPSSLTGKVAPEEFKASINRVNSCLRKNL-PVNVR------------WllcgclcccctlgcsMWPVICLS--KR 110
Cdd:pfam10256  16 QFSTLYPPELEGRISEQEFREIINTINEILAEAFnPYSWRnildnvlglltgY---------------LWSLVGKThyKK 80

                          90       100
                  ....*....|....*....|....
gi 157787143  111 TRRSIEKLLEWENNRLYHKLCLHW 134
Cdd:pfam10256  81 RLKKLEKYIEELNEEVFNPRGLKI 104
 
Name Accession Description Interval E-value
Erf4 pfam10256
Golgin subfamily A member 7/ERF4 family; This family of proteins includes Golgin subfamily A ...
 46-134 1.86e-03

Golgin subfamily A member 7/ERF4 family; This family of proteins includes Golgin subfamily A member 7 proteins as well as Ras modification protein ERF4.


Pssm-ID: 463029  Cd Length: 116  Bit Score: 36.31  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157787143   46 KFESEFPSSLTGKVAPEEFKASINRVNSCLRKNL-PVNVR------------WllcgclcccctlgcsMWPVICLS--KR 110
Cdd:pfam10256  16 QFSTLYPPELEGRISEQEFREIINTINEILAEAFnPYSWRnildnvlglltgY---------------LWSLVGKThyKK 80

                          90       100
                  ....*....|....*....|....
gi 157787143  111 TRRSIEKLLEWENNRLYHKLCLHW 134
Cdd:pfam10256  81 RLKKLEKYIEELNEEVFNPRGLKI 104
 
Name Accession Description Interval E-value
Erf4 pfam10256
Golgin subfamily A member 7/ERF4 family; This family of proteins includes Golgin subfamily A ...
 46-134 1.86e-03

Golgin subfamily A member 7/ERF4 family; This family of proteins includes Golgin subfamily A member 7 proteins as well as Ras modification protein ERF4.


Pssm-ID: 463029  Cd Length: 116  Bit Score: 36.31  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157787143   46 KFESEFPSSLTGKVAPEEFKASINRVNSCLRKNL-PVNVR------------WllcgclcccctlgcsMWPVICLS--KR 110
Cdd:pfam10256  16 QFSTLYPPELEGRISEQEFREIINTINEILAEAFnPYSWRnildnvlglltgY---------------LWSLVGKThyKK 80

                          90       100
                  ....*....|....*....|....
gi 157787143  111 TRRSIEKLLEWENNRLYHKLCLHW 134
Cdd:pfam10256  81 RLKKLEKYIEELNEEVFNPRGLKI 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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