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Conserved domains on  [gi|157786672|ref|NP_001099301|]
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large ribosomal subunit protein bL27m [Rattus norvegicus]

Protein Classification

bL27 family ribosomal protein( domain architecture ID 10470195)

bL27 family ribosomal protein such as mitochondrial 39S ribosomal protein L27 from vertebrates and 54S ribosomal protein L27 from fungi

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
31-101 1.82e-33

Ribosomal L27 protein;


:

Pssm-ID: 460025  Cd Length: 77  Bit Score: 112.45  E-value: 1.82e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157786672   31 ASKKTGGSSKNlGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGKNKCLYALEEGIVRYTK 101
Cdd:pfam01016   1 AHKKGGGSTRN-GRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFER 70
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
31-101 1.82e-33

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 112.45  E-value: 1.82e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157786672   31 ASKKTGGSSKNlGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGKNKCLYALEEGIVRYTK 101
Cdd:pfam01016   1 AHKKGGGSTRN-GRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFER 70
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 31-101 2.91e-20

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 78.94  E-value: 2.91e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157786672  31 ASKKTGGSSKNlGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGKNKCLYALEEGIVRYTK 101
Cdd:COG0211    2 AHKKGGGSSRN-GRDSNSKRLGVKRFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVVKFER 71
rpmA PRK05435
50S ribosomal protein L27; Validated
 31-101 9.29e-20

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 77.76  E-value: 9.29e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157786672  31 ASKKTGGSSKNlGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGKNKCLYALEEGIVRYTK 101
Cdd:PRK05435   2 AHKKGGGSTRN-GRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFER 71
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
31-101 1.82e-33

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 112.45  E-value: 1.82e-33
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157786672   31 ASKKTGGSSKNlGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGKNKCLYALEEGIVRYTK 101
Cdd:pfam01016   1 AHKKGGGSTRN-GRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFER 70
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 31-101 2.91e-20

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 78.94  E-value: 2.91e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157786672  31 ASKKTGGSSKNlGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGKNKCLYALEEGIVRYTK 101
Cdd:COG0211    2 AHKKGGGSSRN-GRDSNSKRLGVKRFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVVKFER 71
rpmA PRK05435
50S ribosomal protein L27; Validated
 31-101 9.29e-20

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 77.76  E-value: 9.29e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157786672  31 ASKKTGGSSKNlGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGKNKCLYALEEGIVRYTK 101
Cdd:PRK05435   2 AHKKGGGSTRN-GRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFER 71
rpl27 CHL00121
ribosomal protein L27; Reviewed
 31-101 1.57e-16

ribosomal protein L27; Reviewed


Pssm-ID: 214370  Cd Length: 86  Bit Score: 69.65  E-value: 1.57e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157786672  31 ASKKTGGSSKNlGGKSRGKHYGIKKMEGHYVHAGNILGTQRQFRWHPGAHVGLGKNKCLYALEEGIVRYTK 101
Cdd:CHL00121   2 AHKKGAGSTKN-GRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYALIDGFVKFKK 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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