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Conserved domains on  [gi|157820181|ref|NP_001102846|]
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acyl-CoA:lysophosphatidylglycerol acyltransferase 1 [Rattus norvegicus]

Protein Classification

lysophospholipid acyltransferase family protein( domain architecture ID 10870651)

lysophospholipid acyltransferase (LPLAT) family protein may act as an acyltransferase of a de novo or remodeling pathway of glycerophospholipid biosynthesis, catalyzing the incorporation of an acyl group from either acyl-CoAs or acyl-acyl carrier proteins (acyl-ACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid

CATH:  1.10.1200.50
EC:  2.3.1.-
Gene Ontology:  GO:0016746|GO:0008654|GO:0006644
SCOP:  4003349

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LPLAT_LCLAT1-like cd07990
Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like; ...
69-285 9.35e-46

Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like; Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.


:

Pssm-ID: 153252 [Multi-domain]  Cd Length: 193  Bit Score: 155.09  E-value: 9.35e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181  69 VASWGWYAGYTVMEWGEDIKaIAKDEAVMLVNHQATGDVCTLMMCLQDKGPVVAQMMWLMDHIFKYTNFGIVSLIHGDFF 148
Cdd:cd07990    1 VFLFEWLSGVKVVVYGDEPK-LPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLGGWGWQLGEFIF 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 149 IRQgRAYRDQQllVLKKHLEHNYRSRDRKWIVLFPEGGFL-RKRRETSQAFAKKNNLPFLTHVTLPRFGATNIILKALva 227
Cdd:cd07990   80 LKR-KWEKDEK--TIKRQLKRLKDSPEPFWLLIFPEGTRFtEEKKERSQEFAEKNGLPPLKHVLLPRTKGFVAILETL-- 154
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 157820181 228 rqengspaggdargleckSRGLQWIIDTTIAYPKAEPIDIQTWILGyRKPTVTHVHYR 285
Cdd:cd07990  155 ------------------RDAVDAVYDVTIAYPDGKPPSEQRLLLG-GKPREVHVHVR 193
Acyltransf_C pfam16076
Acyltransferase C-terminus; This domain is found at the C-terminus of several different ...
274-344 1.33e-17

Acyltransferase C-terminus; This domain is found at the C-terminus of several different acyltransferases including 1-acyl-sn-glycerol-3-phosphate acyltransferase, acyl-CoA:lysophosphatidylglycerol acyltransferase 1 and lysocardiolipin acyltransferase 1.


:

Pssm-ID: 465006 [Multi-domain]  Cd Length: 74  Bit Score: 76.46  E-value: 1.33e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157820181  274 YRKPTVTHVHYRIFPIADVPLETEDLTNWLYQRFIEKEDLLSHFYKTGAFPPPQGQKEAvSRAMTLSNVWI 344
Cdd:pfam16076   4 NGKPSEVHMYIRRIPLEELPEDEEELAQWLHDLFVEKDKLLDYFYETGTFFPGKEHIIP-RRLKSLLVFIF 73
 
Name Accession Description Interval E-value
LPLAT_LCLAT1-like cd07990
Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like; ...
69-285 9.35e-46

Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like; Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.


Pssm-ID: 153252 [Multi-domain]  Cd Length: 193  Bit Score: 155.09  E-value: 9.35e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181  69 VASWGWYAGYTVMEWGEDIKaIAKDEAVMLVNHQATGDVCTLMMCLQDKGPVVAQMMWLMDHIFKYTNFGIVSLIHGDFF 148
Cdd:cd07990    1 VFLFEWLSGVKVVVYGDEPK-LPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLGGWGWQLGEFIF 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 149 IRQgRAYRDQQllVLKKHLEHNYRSRDRKWIVLFPEGGFL-RKRRETSQAFAKKNNLPFLTHVTLPRFGATNIILKALva 227
Cdd:cd07990   80 LKR-KWEKDEK--TIKRQLKRLKDSPEPFWLLIFPEGTRFtEEKKERSQEFAEKNGLPPLKHVLLPRTKGFVAILETL-- 154
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 157820181 228 rqengspaggdargleckSRGLQWIIDTTIAYPKAEPIDIQTWILGyRKPTVTHVHYR 285
Cdd:cd07990  155 ------------------RDAVDAVYDVTIAYPDGKPPSEQRLLLG-GKPREVHVHVR 193
PLN02510 PLN02510
probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
173-365 1.97e-19

probable 1-acyl-sn-glycerol-3-phosphate acyltransferase


Pssm-ID: 178126 [Multi-domain]  Cd Length: 374  Bit Score: 88.60  E-value: 1.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 173 SRDRKWIVLFPEG-GFLRKRRETSQAFAKKNNLPFLTHVTLPR---FGATniilkalvarqengspaggdargLECKSRG 248
Cdd:PLN02510 169 PRDPLWLALFPEGtDYTEAKCQRSQKFAAEHGLPILNNVLLPKtkgFVSC-----------------------LQELRCS 225
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 249 LQWIIDTTIAYPKAEPIDIQTwILGYrKPTVTHVHYRIFPIADVPLETEDLTNWLYQRFIEKEDLLSHFYKTGAFpPPQG 328
Cdd:PLN02510 226 LDAVYDVTIGYKHRCPSFLDN-VFGI-DPSEVHIHIRRIPLKQIPTSEDEVSAWLMDRFQLKDQLLSDFYAQGHF-PNEG 302
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 157820181 329 QKEAVSRAMTLSNVwiLLIQSFAFLSGYLWYHVIQYF 365
Cdd:PLN02510 303 TEGELSTLKCLANF--LAVIALTTVFTYLTLFSSVWF 337
Acyltransf_C pfam16076
Acyltransferase C-terminus; This domain is found at the C-terminus of several different ...
274-344 1.33e-17

Acyltransferase C-terminus; This domain is found at the C-terminus of several different acyltransferases including 1-acyl-sn-glycerol-3-phosphate acyltransferase, acyl-CoA:lysophosphatidylglycerol acyltransferase 1 and lysocardiolipin acyltransferase 1.


Pssm-ID: 465006 [Multi-domain]  Cd Length: 74  Bit Score: 76.46  E-value: 1.33e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157820181  274 YRKPTVTHVHYRIFPIADVPLETEDLTNWLYQRFIEKEDLLSHFYKTGAFPPPQGQKEAvSRAMTLSNVWI 344
Cdd:pfam16076   4 NGKPSEVHMYIRRIPLEELPEDEEELAQWLHDLFVEKDKLLDYFYETGTFFPGKEHIIP-RRLKSLLVFIF 73
PlsC smart00563
Phosphate acyltransferases; Function in phospholipid biosynthesis and have either ...
95-214 8.42e-12

Phosphate acyltransferases; Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.


Pssm-ID: 214724 [Multi-domain]  Cd Length: 118  Bit Score: 61.60  E-value: 8.42e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181    95 AVMLVNHQATGDVCTLMMCLQDKGPVVAQMMWlmDHIFKYTNFGIVSLIHGDFFIRQGRAYRDQQllVLKKHLEHnyrSR 174
Cdd:smart00563   1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAK--KELFYVPLLGWLLRLLGAIFIDRSNGRKARA--ALREAVEL---LK 73
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 157820181   175 DRKWIVLFPEGGFLR-KRRETSQAFAKKNNLPFLTHVtLPR 214
Cdd:smart00563  74 EGEWLLIFPEGTRSRpGKLLPFKKGAARLALEAGVPI-VPV 113
Acyltransferase pfam01553
Acyltransferase; This family contains acyltransferases involved in phospholipid biosynthesis ...
91-192 9.61e-03

Acyltransferase; This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function. This family also includes tafazzin, the Barth syndrome gene.


Pssm-ID: 366704 [Multi-domain]  Cd Length: 131  Bit Score: 36.10  E-value: 9.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181   91 AKDEAVMLVNHQATGDVCTLMMCLQDKGPVVAQMMwlMDHIFKYTNFG-IVSLIHGDFFIRQGRAYRDQQLLVLKKHLEH 169
Cdd:pfam01553  12 RGGPAIVVANHQSYLDVLLLSLALYKRGRPLVFVA--KKELFDIPLVGwLMRLLGCIFIDRKNRKDAAGTLEYLVELLRE 89
                          90       100
                  ....*....|....*....|...
gi 157820181  170 NyrsrdrKWIVLFPEGGFLRKRR 192
Cdd:pfam01553  90 G------KLVVIFPEGTRSREGE 106
 
Name Accession Description Interval E-value
LPLAT_LCLAT1-like cd07990
Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like; ...
69-285 9.35e-46

Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like; Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.


Pssm-ID: 153252 [Multi-domain]  Cd Length: 193  Bit Score: 155.09  E-value: 9.35e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181  69 VASWGWYAGYTVMEWGEDIKaIAKDEAVMLVNHQATGDVCTLMMCLQDKGPVVAQMMWLMDHIFKYTNFGIVSLIHGDFF 148
Cdd:cd07990    1 VFLFEWLSGVKVVVYGDEPK-LPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLGGWGWQLGEFIF 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 149 IRQgRAYRDQQllVLKKHLEHNYRSRDRKWIVLFPEGGFL-RKRRETSQAFAKKNNLPFLTHVTLPRFGATNIILKALva 227
Cdd:cd07990   80 LKR-KWEKDEK--TIKRQLKRLKDSPEPFWLLIFPEGTRFtEEKKERSQEFAEKNGLPPLKHVLLPRTKGFVAILETL-- 154
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 157820181 228 rqengspaggdargleckSRGLQWIIDTTIAYPKAEPIDIQTWILGyRKPTVTHVHYR 285
Cdd:cd07990  155 ------------------RDAVDAVYDVTIAYPDGKPPSEQRLLLG-GKPREVHVHVR 193
PLN02510 PLN02510
probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
173-365 1.97e-19

probable 1-acyl-sn-glycerol-3-phosphate acyltransferase


Pssm-ID: 178126 [Multi-domain]  Cd Length: 374  Bit Score: 88.60  E-value: 1.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 173 SRDRKWIVLFPEG-GFLRKRRETSQAFAKKNNLPFLTHVTLPR---FGATniilkalvarqengspaggdargLECKSRG 248
Cdd:PLN02510 169 PRDPLWLALFPEGtDYTEAKCQRSQKFAAEHGLPILNNVLLPKtkgFVSC-----------------------LQELRCS 225
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 249 LQWIIDTTIAYPKAEPIDIQTwILGYrKPTVTHVHYRIFPIADVPLETEDLTNWLYQRFIEKEDLLSHFYKTGAFpPPQG 328
Cdd:PLN02510 226 LDAVYDVTIGYKHRCPSFLDN-VFGI-DPSEVHIHIRRIPLKQIPTSEDEVSAWLMDRFQLKDQLLSDFYAQGHF-PNEG 302
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 157820181 329 QKEAVSRAMTLSNVwiLLIQSFAFLSGYLWYHVIQYF 365
Cdd:PLN02510 303 TEGELSTLKCLANF--LAVIALTTVFTYLTLFSSVWF 337
Acyltransf_C pfam16076
Acyltransferase C-terminus; This domain is found at the C-terminus of several different ...
274-344 1.33e-17

Acyltransferase C-terminus; This domain is found at the C-terminus of several different acyltransferases including 1-acyl-sn-glycerol-3-phosphate acyltransferase, acyl-CoA:lysophosphatidylglycerol acyltransferase 1 and lysocardiolipin acyltransferase 1.


Pssm-ID: 465006 [Multi-domain]  Cd Length: 74  Bit Score: 76.46  E-value: 1.33e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 157820181  274 YRKPTVTHVHYRIFPIADVPLETEDLTNWLYQRFIEKEDLLSHFYKTGAFPPPQGQKEAvSRAMTLSNVWI 344
Cdd:pfam16076   4 NGKPSEVHMYIRRIPLEELPEDEEELAQWLHDLFVEKDKLLDYFYETGTFFPGKEHIIP-RRLKSLLVFIF 73
PLN02380 PLN02380
1-acyl-sn-glycerol-3-phosphate acyltransferase
24-324 3.77e-12

1-acyl-sn-glycerol-3-phosphate acyltransferase


Pssm-ID: 178006 [Multi-domain]  Cd Length: 376  Bit Score: 66.69  E-value: 3.77e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181  24 FMVANNLVAIPSYICYIIIlQPLrvldSKRFW-YIEGLMYKWL-LGMVASWGWYAGYTVMEWG--EDIKAIAKDEAVMLV 99
Cdd:PLN02380  16 FLLSGLIVNLIQAVCFILV-RPL----SKSLYrRINRAVAELLwLELIWLVDWWAGVKVQLYAdeETFELMGKEHALVIS 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 100 NHQATGDVCTLMMCLQDKG----------------PVVAQMMWLMDHIFKYTNFGivslihgdffirqgrayRDQQllVL 163
Cdd:PLN02380  91 NHRSDIDWLVGWILAQRSGclgsalavmkksskflPVIGWSMWFSEYVFLERSWA-----------------KDEN--TL 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 164 KKHLEhnyRSRDRK---WIVLFPEGG-FLRKRRETSQAFAKKNNLPFLTHVTLPR---FGATNIILKALVarqengsPAg 236
Cdd:PLN02380 152 KSGFQ---RLKDFPrpfWLALFVEGTrFTQAKLLAAQEYAASRGLPVPRNVLIPRtkgFVSAVSNMRSFV-------PA- 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181 237 gdarglecksrglqwIIDTTIAYPKAEPIDIQTWILGyRKPTVTHVHYRIFPIADVPLETEDLTNWLYQRFIEKEDLLSH 316
Cdd:PLN02380 221 ---------------IYDVTVAVPKGQPAPTMLRIFR-GQSSVVHVHIKRHSMKELPETDDGIAQWCKDVFVAKDALLDK 284

                 ....*...
gi 157820181 317 FYKTGAFP 324
Cdd:PLN02380 285 HFAEDTFG 292
PlsC smart00563
Phosphate acyltransferases; Function in phospholipid biosynthesis and have either ...
95-214 8.42e-12

Phosphate acyltransferases; Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.


Pssm-ID: 214724 [Multi-domain]  Cd Length: 118  Bit Score: 61.60  E-value: 8.42e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181    95 AVMLVNHQATGDVCTLMMCLQDKGPVVAQMMWlmDHIFKYTNFGIVSLIHGDFFIRQGRAYRDQQllVLKKHLEHnyrSR 174
Cdd:smart00563   1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAK--KELFYVPLLGWLLRLLGAIFIDRSNGRKARA--ALREAVEL---LK 73
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 157820181   175 DRKWIVLFPEGGFLR-KRRETSQAFAKKNNLPFLTHVtLPR 214
Cdd:smart00563  74 EGEWLLIFPEGTRSRpGKLLPFKKGAARLALEAGVPI-VPV 113
LPLAT_AGPAT-like cd07989
Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; ...
90-205 1.92e-03

Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like; Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.


Pssm-ID: 153251 [Multi-domain]  Cd Length: 184  Bit Score: 38.79  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181  90 IAKDEAVMLV-NHQATGDVCTLMMCLQD-----------KGPVVAQMMWLMDHIFkytnfgivslihgdffIRQGRAYRD 157
Cdd:cd07989   20 LPPKGPVIIVaNHQSYLDPLVLGAALPRpirfvakkelfKIPFLGWLLRLLGAIP----------------IDRGNGRSA 83
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 157820181 158 QQLL-VLKKHLehnyrsRDRKWIVLFPEGGflRKRRETSQAF-------AKKNNLP 205
Cdd:cd07989   84 REALrEAIEAL------KEGESVVIFPEGT--RSRDGELLPFksgafrlAKEAGVP 131
Acyltransferase pfam01553
Acyltransferase; This family contains acyltransferases involved in phospholipid biosynthesis ...
91-192 9.61e-03

Acyltransferase; This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function. This family also includes tafazzin, the Barth syndrome gene.


Pssm-ID: 366704 [Multi-domain]  Cd Length: 131  Bit Score: 36.10  E-value: 9.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157820181   91 AKDEAVMLVNHQATGDVCTLMMCLQDKGPVVAQMMwlMDHIFKYTNFG-IVSLIHGDFFIRQGRAYRDQQLLVLKKHLEH 169
Cdd:pfam01553  12 RGGPAIVVANHQSYLDVLLLSLALYKRGRPLVFVA--KKELFDIPLVGwLMRLLGCIFIDRKNRKDAAGTLEYLVELLRE 89
                          90       100
                  ....*....|....*....|...
gi 157820181  170 NyrsrdrKWIVLFPEGGFLRKRR 192
Cdd:pfam01553  90 G------KLVVIFPEGTRSREGE 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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