|
Name |
Accession |
Description |
Interval |
E-value |
| DUF5585 super family |
cl39316 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1102-1472 |
5.81e-07 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
The actual alignment was detected with superfamily member pfam17823:
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 54.20 E-value: 5.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1102 SPISASKPSFNWSGNKSSNTTSYAEESAPSQIKDTRTVSQPGGSSFLPKRPVASTVLEQTEkkagefkfSEAKANAFVET 1181
Cdd:pfam17823 68 APVTLTKGTSAAHLNSTEVTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQ--------SLPAAIAALPS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1182 AAGSVQRLSTTSSGSDFESSKGFGAQFSTmSSGAPASSFSSKSLFGfNSSSSIPGDKFTFPAVTAPLSGTPLDSTSTLFT 1261
Cdd:pfam17823 140 EAFSAPRAAACRANASAAPRAAIAAASAP-HAASPAPRTAASSTTA-ASSTTAASSAPTTAASSAPATLTPARGISTAAT 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1262 ASSAPVSSSSQDPVPasipiSSAPVPQTFS-VTSTSTVSATGFNVPFGKPLTSVKVDLNQAAPStpspspgptagftfnl 1340
Cdd:pfam17823 218 ATGHPAAGTALAAVG-----NSSPAAGTVTaAVGTVTPAALATLAAAAGTVASAAGTINMGDPH---------------- 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1341 pALSPSSPEMVSSSTGQSSLFPPSAPTSQVSSDQASatsslTDSSRLFSSTSLSSTPPITPPDAFQSPQVSTPSSAVpIT 1420
Cdd:pfam17823 277 -ARRLSPAKHMPSDTMARNPAAPMGAQAQGPIIQVS-----TDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAV-VT 349
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 334183349 1421 EPVSEPKKPEAQSSSILSTQSTVDSVANATKTQNEPLPVKSEISNPGTTVTP 1472
Cdd:pfam17823 350 TTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGILLAP 401
|
|
| PPE super family |
cl35037 |
PPE-repeat protein [Function unknown]; |
1637-1731 |
3.39e-05 |
|
PPE-repeat protein [Function unknown];
The actual alignment was detected with superfamily member COG5651:
Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 48.35 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1637 FGQPSQIGG--GQQALGSVLGSFGQSRQIGAGLPGATFGSPTGFGGSNPGSG---LPNAPASGGFAAAGSSATGGFAAMA 1711
Cdd:COG5651 167 FTQPPPTITnpGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGpigLNSGPGNTGFAGTGAAAGAAAAAAA 246
|
90 100
....*....|....*....|
gi 334183349 1712 SAGRGFAGASSTPTGGFAAL 1731
Cdd:COG5651 247 AAAAAGAGASAALASLAATL 266
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
1580-1673 |
3.77e-03 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
:
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 38.37 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1580 GPFGNATTTTSNPFNMTvPSGELFKPASFNFQNPQPSQPAGFGSFSVTPSQTPAQSGFGQPSQiGGGQQALGSVLGSFGQ 1659
Cdd:pfam13634 1 GLFGAATSTSGGLFGNT-STTAASGGGLFGAASTATATTSGGGLFGNSSSNAPSGGLFGATNT-TTQTATGGGLFGNNAA 78
|
90
....*....|....
gi 334183349 1660 SRQIGAGlpGATFG 1673
Cdd:pfam13634 79 TTTSTTG--GGLFG 90
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1102-1472 |
5.81e-07 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 54.20 E-value: 5.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1102 SPISASKPSFNWSGNKSSNTTSYAEESAPSQIKDTRTVSQPGGSSFLPKRPVASTVLEQTEkkagefkfSEAKANAFVET 1181
Cdd:pfam17823 68 APVTLTKGTSAAHLNSTEVTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQ--------SLPAAIAALPS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1182 AAGSVQRLSTTSSGSDFESSKGFGAQFSTmSSGAPASSFSSKSLFGfNSSSSIPGDKFTFPAVTAPLSGTPLDSTSTLFT 1261
Cdd:pfam17823 140 EAFSAPRAAACRANASAAPRAAIAAASAP-HAASPAPRTAASSTTA-ASSTTAASSAPTTAASSAPATLTPARGISTAAT 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1262 ASSAPVSSSSQDPVPasipiSSAPVPQTFS-VTSTSTVSATGFNVPFGKPLTSVKVDLNQAAPStpspspgptagftfnl 1340
Cdd:pfam17823 218 ATGHPAAGTALAAVG-----NSSPAAGTVTaAVGTVTPAALATLAAAAGTVASAAGTINMGDPH---------------- 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1341 pALSPSSPEMVSSSTGQSSLFPPSAPTSQVSSDQASatsslTDSSRLFSSTSLSSTPPITPPDAFQSPQVSTPSSAVpIT 1420
Cdd:pfam17823 277 -ARRLSPAKHMPSDTMARNPAAPMGAQAQGPIIQVS-----TDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAV-VT 349
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 334183349 1421 EPVSEPKKPEAQSSSILSTQSTVDSVANATKTQNEPLPVKSEISNPGTTVTP 1472
Cdd:pfam17823 350 TTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGILLAP 401
|
|
| PPE |
COG5651 |
PPE-repeat protein [Function unknown]; |
1637-1731 |
3.39e-05 |
|
PPE-repeat protein [Function unknown];
Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 48.35 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1637 FGQPSQIGG--GQQALGSVLGSFGQSRQIGAGLPGATFGSPTGFGGSNPGSG---LPNAPASGGFAAAGSSATGGFAAMA 1711
Cdd:COG5651 167 FTQPPPTITnpGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGpigLNSGPGNTGFAGTGAAAGAAAAAAA 246
|
90 100
....*....|....*....|
gi 334183349 1712 SAGRGFAGASSTPTGGFAAL 1731
Cdd:COG5651 247 AAAAAGAGASAALASLAATL 266
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1341-1725 |
3.60e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.70 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1341 PALSPSSPEMVSSSTGQSSLfPPSAPTSQVSSDQASATSSLTDSSRLFSSTSLSSTPPITP-PDAFQSPQVSTPSSAVPI 1419
Cdd:PHA03247 2624 PDPPPPSPSPAANEPDPHPP-PTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPrRRAARPTVGSLTSLADPP 2702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1420 TEPVSEPKKPEAQSSSILSTQSTVDSVANATKTQNEPLPVKSeisnPGTTVTPVSSSGFLSGFSSGTQSSLASMAAPsfs 1499
Cdd:PHA03247 2703 PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV----PAGPATPGGPARPARPPTTAGPPAPAPPAAP--- 2775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1500 wpgSSQPQQLSSTPAPFPASSPTSASPFGEkkdivDTQEDEMDEEAPEASQTTELSMGSFGGFGLGSTPNPGAPKTNPF- 1578
Cdd:PHA03247 2776 ---AAGPPRRLTRPAVASLSESRESLPSPW-----DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPp 2847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1579 -----------GGPFGNATTTTSNPFNMTVPSgelfKPASFNFQNPQPSQPAgfGSFSVTPSQTPAQSGFGQPSQIGGGQ 1647
Cdd:PHA03247 2848 pslplggsvapGGDVRRRPPSRSPAAKPAAPA----RPPVRRLARPAVSRST--ESFALPPDQPERPPQPQAPPPPQPQP 2921
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334183349 1648 QALGSVLGSFGQSRQigaGLPGATFGSPTGFGGSNPGSGLPNAPASGGFaAAGSSATGGFAAMASAGRGFAGASSTPT 1725
Cdd:PHA03247 2922 QPPPPPQPQPPPPPP---PRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL-VPGRVAVPRFRVPQPAPSREAPASSTPP 2995
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
1580-1673 |
3.77e-03 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 38.37 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1580 GPFGNATTTTSNPFNMTvPSGELFKPASFNFQNPQPSQPAGFGSFSVTPSQTPAQSGFGQPSQiGGGQQALGSVLGSFGQ 1659
Cdd:pfam13634 1 GLFGAATSTSGGLFGNT-STTAASGGGLFGAASTATATTSGGGLFGNSSSNAPSGGLFGATNT-TTQTATGGGLFGNNAA 78
|
90
....*....|....
gi 334183349 1660 SRQIGAGlpGATFG 1673
Cdd:pfam13634 79 TTTSTTG--GGLFG 90
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1102-1472 |
5.81e-07 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 54.20 E-value: 5.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1102 SPISASKPSFNWSGNKSSNTTSYAEESAPSQIKDTRTVSQPGGSSFLPKRPVASTVLEQTEkkagefkfSEAKANAFVET 1181
Cdd:pfam17823 68 APVTLTKGTSAAHLNSTEVTAEHTPHGTDLSEPATREGAADGAASRALAAAASSSPSSAAQ--------SLPAAIAALPS 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1182 AAGSVQRLSTTSSGSDFESSKGFGAQFSTmSSGAPASSFSSKSLFGfNSSSSIPGDKFTFPAVTAPLSGTPLDSTSTLFT 1261
Cdd:pfam17823 140 EAFSAPRAAACRANASAAPRAAIAAASAP-HAASPAPRTAASSTTA-ASSTTAASSAPTTAASSAPATLTPARGISTAAT 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1262 ASSAPVSSSSQDPVPasipiSSAPVPQTFS-VTSTSTVSATGFNVPFGKPLTSVKVDLNQAAPStpspspgptagftfnl 1340
Cdd:pfam17823 218 ATGHPAAGTALAAVG-----NSSPAAGTVTaAVGTVTPAALATLAAAAGTVASAAGTINMGDPH---------------- 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1341 pALSPSSPEMVSSSTGQSSLFPPSAPTSQVSSDQASatsslTDSSRLFSSTSLSSTPPITPPDAFQSPQVSTPSSAVpIT 1420
Cdd:pfam17823 277 -ARRLSPAKHMPSDTMARNPAAPMGAQAQGPIIQVS-----TDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAV-VT 349
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 334183349 1421 EPVSEPKKPEAQSSSILSTQSTVDSVANATKTQNEPLPVKSEISNPGTTVTP 1472
Cdd:pfam17823 350 TTKAQAKEPSASPVPVLHTSMIPEVEATSPTTQPSPLLPTQGAAGPGILLAP 401
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1210-1651 |
1.21e-06 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 53.77 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1210 TMSSGAPASSFSSKSLFGFNSSSSIPGDKFTFPAVTAPLSGTPLDSTSTLFtassapvssssqdpvpaSIPISSAPVpqt 1289
Cdd:pfam05109 367 TLTSGTPSGCENISGAFASNRTFDITVSGLGTAPKTLIITRTATNATTTTH-----------------KVIFSKAPE--- 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1290 fSVTSTSTVSATGFNVPfgkpltSVKVDLNQAAPSTPSPSPGPTAGFTFNLPALSpsSPEMVSSSTGQSSLFPPSAPTSQ 1369
Cdd:pfam05109 427 -STTTSPTLNTTGFAAP------NTTTGLPSSTHVPTNLTAPASTGPTVSTADVT--SPTPAGTTSGASPVTPSPSPRDN 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1370 VSSDQASATSSLTDSSRLFSSTSLSSTPPITPPDA-FQSPQV--STPSSAVPITEPVSEPKKPEAQS----SSILSTQST 1442
Cdd:pfam05109 498 GTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPnATSPTLgkTSPTSAVTTPTPNATSPTPAVTTptpnATIPTLGKT 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1443 VDSVANATKTQNEPLPVKSEISNP---------GTTVTPVSSSGFLSGFSSGT--QSSLASMAAPSFSWpgssQPQQLSS 1511
Cdd:pfam05109 578 SPTSAVTTPTPNATSPTVGETSPQanttnhtlgGTSSTPVVTSPPKNATSAVTtgQHNITSSSTSSMSL----RPSSISE 653
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1512 TPAPFPASSPTSASPFGEKKDivDTQEDEMDEEAPEASQTTELSmgsfggfglGSTPNPGAPKTNPFGGPfGNATTTTsN 1591
Cdd:pfam05109 654 TLSPSTSDNSTSHMPLLTSAH--PTGGENITQVTPASTSTHHVS---------TSSPAPRPGTTSQASGP-GNSSTST-K 720
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1592 PFNMTVPSGELFKPASfnfqnpQPSQPAgfGSFSVTPSQTpaqSGFGQPSQIGGGQQALG 1651
Cdd:pfam05109 721 PGEVNVTKGTPPKNAT------SPQAPS--GQKTAVPTVT---STGGKANSTTGGKHTTG 769
|
|
| PPE |
COG5651 |
PPE-repeat protein [Function unknown]; |
1637-1731 |
3.39e-05 |
|
PPE-repeat protein [Function unknown];
Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 48.35 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1637 FGQPSQIGG--GQQALGSVLGSFGQSRQIGAGLPGATFGSPTGFGGSNPGSG---LPNAPASGGFAAAGSSATGGFAAMA 1711
Cdd:COG5651 167 FTQPPPTITnpGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGpigLNSGPGNTGFAGTGAAAGAAAAAAA 246
|
90 100
....*....|....*....|
gi 334183349 1712 SAGRGFAGASSTPTGGFAAL 1731
Cdd:COG5651 247 AAAAAGAGASAALASLAATL 266
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1341-1725 |
3.60e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.70 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1341 PALSPSSPEMVSSSTGQSSLfPPSAPTSQVSSDQASATSSLTDSSRLFSSTSLSSTPPITP-PDAFQSPQVSTPSSAVPI 1419
Cdd:PHA03247 2624 PDPPPPSPSPAANEPDPHPP-PTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPrRRAARPTVGSLTSLADPP 2702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1420 TEPVSEPKKPEAQSSSILSTQSTVDSVANATKTQNEPLPVKSeisnPGTTVTPVSSSGFLSGFSSGTQSSLASMAAPsfs 1499
Cdd:PHA03247 2703 PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAV----PAGPATPGGPARPARPPTTAGPPAPAPPAAP--- 2775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1500 wpgSSQPQQLSSTPAPFPASSPTSASPFGEkkdivDTQEDEMDEEAPEASQTTELSMGSFGGFGLGSTPNPGAPKTNPF- 1578
Cdd:PHA03247 2776 ---AAGPPRRLTRPAVASLSESRESLPSPW-----DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPp 2847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1579 -----------GGPFGNATTTTSNPFNMTVPSgelfKPASFNFQNPQPSQPAgfGSFSVTPSQTPAQSGFGQPSQIGGGQ 1647
Cdd:PHA03247 2848 pslplggsvapGGDVRRRPPSRSPAAKPAAPA----RPPVRRLARPAVSRST--ESFALPPDQPERPPQPQAPPPPQPQP 2921
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334183349 1648 QALGSVLGSFGQSRQigaGLPGATFGSPTGFGGSNPGSGLPNAPASGGFaAAGSSATGGFAAMASAGRGFAGASSTPT 1725
Cdd:PHA03247 2922 QPPPPPQPQPPPPPP---PRPQPPLAPTTDPAGAGEPSGAVPQPWLGAL-VPGRVAVPRFRVPQPAPSREAPASSTPP 2995
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1273-1631 |
4.60e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.31 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1273 DPVPASIPISSAPVPQTFSVTSTSTVSATGFNVPfgkpltsvkvdlnqAAPSTPSPSPGPTAGFTFNLPAL-----SPSS 1347
Cdd:PHA03247 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASP--------------ALPAAPAPPAVPAGPATPGGPARparppTTAG 2765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1348 PEMVSSSTGQSSLFPPSAPTSQVSSDQASATSSLTDSSRLFSSTSLSSTPPITPPDAFQSPQVSTPSSAVPITEPVSEPK 1427
Cdd:PHA03247 2766 PPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1428 KPEaqsssilsTQSTVDSVANATKTQNEPlPVKSEISNPGTTVTPvsssgflsgfssgtqsSLASMAAPSFSWPGSSQPQ 1507
Cdd:PHA03247 2846 PPP--------SLPLGGSVAPGGDVRRRP-PSRSPAAKPAAPARP----------------PVRRLARPAVSRSTESFAL 2900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1508 qlsstPAPFPASSPTSASPfgekkdivdtQEDEMDEEAPEASQTTelsmgsFGGFGLGSTPNPGAPKTNPfgGPFGNATT 1587
Cdd:PHA03247 2901 -----PPDQPERPPQPQAP----------PPPQPQPQPPPPPQPQ------PPPPPPPRPQPPLAPTTDP--AGAGEPSG 2957
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 334183349 1588 TTSNPFNMTVPSGELFKPaSFNFQNPQPSQPAgfgSFSVTPSQT 1631
Cdd:PHA03247 2958 AVPQPWLGALVPGRVAVP-RFRVPQPAPSREA---PASSTPPLT 2997
|
|
| PPE |
COG5651 |
PPE-repeat protein [Function unknown]; |
1570-1737 |
3.17e-03 |
|
PPE-repeat protein [Function unknown];
Pssm-ID: 444372 [Multi-domain] Cd Length: 385 Bit Score: 41.80 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1570 PGAPKTNPFGGPFGNATTTTSNPFNMTVPSGELFKPASFNFQNPQPSQPAGFGSFSVTPSQTPAQSGFGQPSQIGGGqqA 1649
Cdd:COG5651 212 GLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGL--A 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1650 LGSVLGSFGQSRQIGAGLPGATFGSPTGFGGSNPGSGLPNAPASGGFAAAGSSATGGFAAMASAGRGFAGASSTPTGGFA 1729
Cdd:COG5651 290 GSPLGLAGGGAGAAAATGLGLGAGGAAGAAGATGAGAALGAGAAAAAAGAAAGAGAAAAAAAGGAGGGGGGALGAGGGGG 369
|
....*...
gi 334183349 1730 AlasgsGG 1737
Cdd:COG5651 370 S-----AG 372
|
|
| Nucleoporin_FG |
pfam13634 |
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in ... |
1580-1673 |
3.77e-03 |
|
Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in nucleoporin proteins. This family includes the yeast nucleoporins Nup116, Nup100, Nup49, Nup57 and Nup 145.
Pssm-ID: 463941 [Multi-domain] Cd Length: 90 Bit Score: 38.37 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1580 GPFGNATTTTSNPFNMTvPSGELFKPASFNFQNPQPSQPAGFGSFSVTPSQTPAQSGFGQPSQiGGGQQALGSVLGSFGQ 1659
Cdd:pfam13634 1 GLFGAATSTSGGLFGNT-STTAASGGGLFGAASTATATTSGGGLFGNSSSNAPSGGLFGATNT-TTQTATGGGLFGNNAA 78
|
90
....*....|....
gi 334183349 1660 SRQIGAGlpGATFG 1673
Cdd:pfam13634 79 TTTSTTG--GGLFG 90
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1237-1521 |
3.97e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.87 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1237 DKFTFPAVTAPLSGTPLDSTSTLFTASSAPVSSSSQDPvpasipisSAPVPQTFSVTSTSTVSATGFNVPFGKPLTSVKV 1316
Cdd:pfam17823 108 DGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAP--------RAAACRANASAAPRAAIAAASAPHAASPAPRTAA 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1317 DLNQAAPSTPSPSPGPTAGFTFNLPALSPSSPEMVSS-STGQSSLFPPSAPTSQVSSDQASATSSLTDSSRLFSSTSLSS 1395
Cdd:pfam17823 180 SSTTAASSTTAASSAPTTAASSAPATLTPARGISTAAtATGHPAAGTALAAVGNSSPAAGTVTAAVGTVTPAALATLAAA 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1396 TPPIT----------PPDAFQSPQVSTPSSAVPITePVSePKKPEAQSSSIlstQSTVDSVANATKtqNEPLPVKSEISN 1465
Cdd:pfam17823 260 AGTVAsaagtinmgdPHARRLSPAKHMPSDTMARN-PAA-PMGAQAQGPII---QVSTDQPVHNTA--GEPTPSPSNTTL 332
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 334183349 1466 PGTTVTPVSSSGFLSGFSSGTQSSLASmAAPSFSWPGSSQPQQLSSTPAPFPASSP 1521
Cdd:pfam17823 333 EPNTPKSVASTNLAVVTTTKAQAKEPS-ASPVPVLHTSMIPEVEATSPTTQPSPLL 387
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1039-1506 |
7.05e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 41.31 E-value: 7.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1039 SERLRSANNTQDRSLLHvkDHASPVVSSNKGIMESFQQDTSEAQSTPFKTRPPMPqsnSPFTISPISASKPSFNWSgnkS 1118
Cdd:PHA03307 21 FPRPPATPGDAADDLLS--GSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPP---GPGTEAPANESRSTPTWS---L 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1119 SNTTSYAEESAPSQIKDTRTVSQPGGSSFLPKRPVASTVLEQTEKKAGEFKFSEAKANAFVETAAGSvqrlstTSSGSDF 1198
Cdd:PHA03307 93 STLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP------AAVASDA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1199 ESSkgfgaqfstmSSGAPASSFSSKSlfgfnsSSSIPGDKFTFPAVTAPLSGTPLDSTstlfTASSAPVSSSSQDPVPAS 1278
Cdd:PHA03307 167 ASS----------RQAALPLSSPEET------ARAPSSPPAEPPPSTPPAAASPRPPR----RSSPISASASSPAPAPGR 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1279 IPISSAPVPQTFSVTSTSTVSATGFNVPFGKPLTSVKVDLNQAAPSTPSPSPGPTAGFTFNLPALSPSSPEMVSSSTGQS 1358
Cdd:PHA03307 227 SAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSG 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1359 SLFPPSAPTSQVSSDQASATSSLTDSSRLFSSTSLSSTPPITPPDAFQSPQVSTPSSAVPITEPVSEPKKPEAQSSSILS 1438
Cdd:PHA03307 307 PAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPT 386
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334183349 1439 TQSTVDSVANATKTQNEPLPVkseisnPGTTVTPVSSSGFLSGFSSGTQSSLASmaaPSFS-WPGSSQP 1506
Cdd:PHA03307 387 RRRARAAVAGRARRRDATGRF------PAGRPRPSPLDAGAASGAFYARYPLLT---PSGEpWPGSPPP 446
|
|
| Nucleoporin_FG2 |
pfam15967 |
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ... |
1189-1367 |
8.97e-03 |
|
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.
Pssm-ID: 435043 [Multi-domain] Cd Length: 586 Bit Score: 40.81 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1189 LSTTSSGSDFESSKGFGAQFSTmsSGAPASSFSSKSLFGFNSSSSIPGDKFTFPAVTAPLSGTPL-DSTSTLFTASSapv 1267
Cdd:pfam15967 1 MSGFSFGGGPGSTATAGGGFSF--GAAAASNPGSTGGFSFGTLGAAPAATATTTTATLGLGGGLFgQKPATGFTFGT--- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183349 1268 ssssqdpvPASIPISSAPVPQTFSVTSTSTVSATGFNVPFGKPL-----------TSVKVDLNQAAPSTPSPSPGPTAGF 1336
Cdd:pfam15967 76 --------PASSTAATGPTGLTLGTPAATTAASTGFSLGFNKPAasatpfslpasSTSGGGLSLGSVLTSTAAQQGATGF 147
|
170 180 190
....*....|....*....|....*....|....*...
gi 334183349 1337 TFNL---PALS-PSSPEMVSSSTGQS---SLFPPSAPT 1367
Cdd:pfam15967 148 TLNLggtPATTtAVSTGLSLGSTLTSlggSLFQNTNST 185
|
|
| |
