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Conserved domains on  [gi|240254514|ref|NP_001118365|]
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growth factor [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PSK super family cl05746
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 70-100 3.58e-08

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


The actual alignment was detected with superfamily member pfam06404:

Pssm-ID: 399419  Cd Length: 89  Bit Score: 47.05  E-value: 3.58e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 240254514   70 EMETKCE----TEECLMK-TTSDAHLDYIYTQTHPP 100
Cdd:pfam06404  54 EAAEACEegddDEECLMRrTLVEAHLDYIYTQHHNH 89
PSK super family cl05746
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 34-62 3.25e-07

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


The actual alignment was detected with superfamily member pfam06404:

Pssm-ID: 399419  Cd Length: 89  Bit Score: 44.35  E-value: 3.25e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 240254514   34 TEIEKNCE----TDECLMK-TTSDAHLDYIYTQN 62
Cdd:pfam06404  53 AEAAEACEegddDEECLMRrTLVEAHLDYIYTQH 86
 
Name Accession Description Interval E-value
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 70-100 3.58e-08

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


Pssm-ID: 399419  Cd Length: 89  Bit Score: 47.05  E-value: 3.58e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 240254514   70 EMETKCE----TEECLMK-TTSDAHLDYIYTQTHPP 100
Cdd:pfam06404  54 EAAEACEegddDEECLMRrTLVEAHLDYIYTQHHNH 89
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 34-62 3.25e-07

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


Pssm-ID: 399419  Cd Length: 89  Bit Score: 44.35  E-value: 3.25e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 240254514   34 TEIEKNCE----TDECLMK-TTSDAHLDYIYTQN 62
Cdd:pfam06404  53 AEAAEACEegddDEECLMRrTLVEAHLDYIYTQH 86
 
Name Accession Description Interval E-value
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 70-100 3.58e-08

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


Pssm-ID: 399419  Cd Length: 89  Bit Score: 47.05  E-value: 3.58e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 240254514   70 EMETKCE----TEECLMK-TTSDAHLDYIYTQTHPP 100
Cdd:pfam06404  54 EAAEACEegddDEECLMRrTLVEAHLDYIYTQHHNH 89
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 34-62 3.25e-07

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


Pssm-ID: 399419  Cd Length: 89  Bit Score: 44.35  E-value: 3.25e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 240254514   34 TEIEKNCE----TDECLMK-TTSDAHLDYIYTQN 62
Cdd:pfam06404  53 AEAAEACEegddDEECLMRrTLVEAHLDYIYTQH 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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