|
Name |
Accession |
Description |
Interval |
E-value |
| Taxilin |
pfam09728 |
Myosin-like coiled-coil protein; Taxilin contains an extraordinarily long coiled-coil domain ... |
170-477 |
1.25e-115 |
|
Myosin-like coiled-coil protein; Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca2+-dependent exocytosis in neuroendocrine cells. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localizes to the nucleus in osteoblasts and dimerizes with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription.
Pssm-ID: 462861 [Multi-domain] Cd Length: 302 Bit Score: 345.01 E-value: 1.25e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 170 KEITLLMQTLNTLSTPEEKLAALCKKYAELLEEHRNAQKQTKLLQRKQSQLVQEKDHLRGEHSKAVLARSKLESLCRELQ 249
Cdd:pfam09728 1 KAARELMQLLNKLDSPEEKLAALCKKYAELLEEMKRLQKDLKKLKKKQDQLQKEKDQLQSELSKAILAKSKLEKLCRELQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 250 RHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQLQMEQHNERNAKLRLENVELAERLKKLIEQYELREEHIDKVFKH 329
Cdd:pfam09728 81 KQNKKLKEESKKLAKEEEEKRKELSEKFQSTLKDIQDKMEEKSEKNNKLREENEELREKLKSLIEQYELRELHFEKLLKT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 330 KDLQQQLVDAKLQQAQemlkEAEERHQREKEflLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFT 409
Cdd:pfam09728 161 KELEVQLAEAKLQQAT----EEEEKKAQEKE--VAKARELKAQVQTLSETEKELREQLNLYVEKFEEFQDTLNKSNEVFT 234
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 189083696 410 TFKQEMEKMTKKIKKLEKETTVYRSRWESSNKALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTE 477
Cdd:pfam09728 235 TFKKEMEKMSKKIKKLEKENLTWKRKWEKSNKALLEMAEERQKLKEELEKLQKKLEKLENLCRALQAE 302
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
202-488 |
1.58e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 202 EHRNAQKQTKLLQRKQSQLVQEKDHLRGEHSKAVLARSKLESLCRELQRHNRSLKEEgVQRAREEEEKRKEVTSHFQVTL 281
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD-LARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 282 NDIQLQMEQHNERNAKLRLENVELAERLKKLIEQYElreehidkvfkhkDLQQQLvdaklQQAQEMLKEAEERHQREKEF 361
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE-------------QLKEEL-----KALREALDELRAELTLLNEE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 362 LLKEAVESQRmcelmkqqethLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTVYRSRWESSNK 441
Cdd:TIGR02168 819 AANLRERLES-----------LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 189083696 442 ALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTERNDLNKRVQDL 488
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
154-461 |
2.01e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 154 RDLRRPQEKKKAKGLGKEITLLMQTLNTLstpEEKLAALCKKYAELLEEHRNAQKQTKLLQRKQSQLVQEKDHLRGEHSK 233
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEEL---EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 234 AVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEkrkevtshfqvtlndIQLQMEQHNERNAKLRLENVELAERLKKLI 313
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAE---------------LEEELEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 314 EQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEMLKEAEERHQREKEFLLKEAVESQRMCELMKQQETHLKQQLALyTEK 393
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL-EEE 436
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 189083696 394 FEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTVYRSRWESSNKALLEMAEEKTLRDKELEGLQ 461
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
286-487 |
3.16e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 3.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 286 LQMEQHNERNAKLRL---ENVELAERLKKLIEQYELR-EEHIDKVFKHKDLQQQLVDA--KLQQAQEMLKEAEERHQREK 359
Cdd:TIGR02168 232 LRLEELREELEELQEelkEAEEELEELTAELQELEEKlEELRLEVSELEEEIEELQKElyALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 360 EFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKEttvyrsrWESS 439
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ-------LETL 384
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 189083696 440 NKALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTERNDLNKRVQD 487
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
194-490 |
6.42e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 6.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 194 KKYAELLEEHRNAQKQTKLLQRKQSQLVQEKDHLRGEHSKAVLAR--SKLESLCRELQRHNRSLKEEGVQRAREEEEKRK 271
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEEleAELAELEAELEELRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 272 EVTShfqvtLNDIQLQMEQHNERNAKLRLENVELAERLKKLIEQYELREEHIDkvfkHKDLQQQLVDAKLQQAQEMLKEA 351
Cdd:COG1196 293 LLAE-----LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE----ELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 352 EERhqrekeflLKEAVESQRmcELMKQQETHLKQQLALYTEKfEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTV 431
Cdd:COG1196 364 EEA--------LLEAEAELA--EAEEELEELAEELLEALRAA-AELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 189083696 432 YRSRWESSNKALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTERNDLNKRVQDLTA 490
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
278-529 |
6.19e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 6.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 278 QVTLNDIQLQMEQHNERNAKLRLENVELAERLKKLIEQYEL---REEHIDKVFKHKDLQQQLVDAKLQQAQEMLKEAEER 354
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEllaELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 355 H---QREKEFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTV 431
Cdd:COG1196 332 LeelEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 432 YRSRWESSNKALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTERNDLNKRVQDLTAGGQGSLTDTGSERRPEAATAS 511
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
250
....*....|....*...
gi 189083696 512 KEQGVESPGAQPSSSPKA 529
Cdd:COG1196 492 RLLLLLEAEADYEGFLEG 509
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
139-475 |
1.07e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.68 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 139 EPGTEEIRASDEVGDRDLRRPQEKKKAKGLGKEITLLMQTLNTLSTPEEKLAALCKKY-------AELLEEHRNAQKQTK 211
Cdd:pfam12128 210 GVVPPKSRLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYksdetliASRQEERQETSAELN 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 212 -LLQRKQSQLVQEKDHLRGEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQLQMEQ 290
Cdd:pfam12128 290 qLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGK 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 291 HNERNAKLRLENVELAERLKKLIEQYElreEHIDKVFKHKDLQQQLVDAKLQQAQEMLK---EAEERHQREKEFLLKEAV 367
Cdd:pfam12128 370 HQDVTAKYNRRRSKIKEQNNRDIAGIK---DKLAKIREARDRQLAVAEDDLQALESELReqlEAGKLEFNEEEYRLKSRL 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 368 ESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLskssevfttfkqemEKMTKKIKKLEKETTVYRSRwessnkallema 447
Cdd:pfam12128 447 GELKLRLNQATATPELLLQLENFDERIERAREEQ--------------EAANAEVERLQSELRQARKR------------ 500
|
330 340
....*....|....*....|....*...
gi 189083696 448 eektlRDKELEGLQVKTQRLEKLCRALQ 475
Cdd:pfam12128 501 -----RDQASEALRQASRRLEERQSALD 523
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-478 |
1.78e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 143 EEIRASDEVGdrdlRRPQEKKKAKGLGKEITLLMQTLNTLSTPEE--KLAALCKKYAEL--LEEHRNAQKQTKLLQRKQS 218
Cdd:PTZ00121 1467 EEAKKADEAK----KKAEEAKKADEAKKKAEEAKKKADEAKKAAEakKKADEAKKAEEAkkADEAKKAEEAKKADEAKKA 1542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 219 QLVQEKDHLR-GEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQlqmEQHNERNAK 297
Cdd:PTZ00121 1543 EEKKKADELKkAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE---EAKKAEEAK 1619
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 298 LRLENVELAERLKKLIEQYELREEHidkvfkhkdlqqqlvdaKLQQAQEMLKEAEERHQREKEFLLKEAVESQRMCELMK 377
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAE-----------------EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 378 QQETHLKQQLALYTEKFEefqntlSKSSEVFTTFKQEMEKMTKKIKKLEKETTVYRSRWESSNKALLEMAEEKTLRDKEL 457
Cdd:PTZ00121 1683 AEEDEKKAAEALKKEAEE------AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
|
330 340
....*....|....*....|.
gi 189083696 458 EGLQVKTQRLEKLCRALQTER 478
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEK 1777
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
143-502 |
2.39e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 143 EEIRASDEVGDRDLRRPQEKKKAKGLGKEITLLMQTLNTLSTPEEKLAALCKKYAELLEEHRNAQKQTKLLQRKQSQLVQ 222
Cdd:pfam02463 693 EILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLK 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 223 EK-DHLRGEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQVTLNDIQLQMEQHNERNaKLRLE 301
Cdd:pfam02463 773 EKeLAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQ-KLEKL 851
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 302 NVELAERLKKLIEQYELREEHIDKvfKHKDLQQQLVDAKlqqAQEMLKEAEERHQREKEFLLKEAVESQ-RMCELMKQQE 380
Cdd:pfam02463 852 AEEELERLEEEITKEELLQELLLK--EEELEEQKLKDEL---ESKEEKEKEEKKELEEESQKLNLLEEKeNEIEERIKEE 926
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 381 THLKQQLALYTEKFEEFQNTLSKSSEVFTtfKQEMEKMTKKIKKLEKETTV-------YRSRWESSNKALLEMAEEKTLR 453
Cdd:pfam02463 927 AEILLKYEEEPEELLLEEADEKEKEENNK--EEEEERNKRLLLAKEELGKVnlmaieeFEEKEERYNKDELEKERLEEEK 1004
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 189083696 454 DKEL-EGLQVKTQRLEKLCRALQTERNDLNKRVQDLTAGGQGSLTDTGSE 502
Cdd:pfam02463 1005 KKLIrAIIEETCQRLKEFLELFVSINKGWNKVFFYLELGGSAELRLEDPD 1054
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-427 |
3.14e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 3.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 160 QEKKKAKGLGKEITLLMQTLntlstpEEKLAALCKKYAELLEEHRNAQKQTKLLQRKQSQLVQEKDHLRGEHSKAVLARS 239
Cdd:TIGR02168 246 EELKEAEEELEELTAELQEL------EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 240 KLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTShFQVTLNDIQLQMEQHNERNAKLRlenvELAERLKKLIEQYELR 319
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELE----EQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 320 EEHIDKvfkhkdlQQQLVDAKLQQAQEML-KEAEERHQREKEFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQ 398
Cdd:TIGR02168 395 IASLNN-------EIERLEARLERLEDRReRLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
250 260
....*....|....*....|....*....
gi 189083696 399 NTLSKSSEVFTTFKQEMEKMTKKIKKLEK 427
Cdd:TIGR02168 468 EELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
186-414 |
4.16e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 186 EEKLAALCKKYAELLEEHRNAQKQTKLLQRKQSQLVQEKDHLRGeHSKAVLARSKLESLCRELQRhnrslkeegvqrare 265
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR-LAEYSWDEIDVASAEREIAE--------------- 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 266 eeekrkevtshfqvtlndIQLQMEQHNERNAKLRlenvELAERLKKLIEQY-ELREEHIDKVFKHKDLQQQLVDAK--LQ 342
Cdd:COG4913 673 ------------------LEAELERLDASSDDLA----ALEEQLEELEAELeELEEELDELKGEIGRLEKELEQAEeeLD 730
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 189083696 343 QAQEMLKEAEERHQREKEFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKsseVFTTFKQE 414
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELER---AMRAFNRE 799
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
195-459 |
2.24e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 195 KYAELLEEHRNAQKQTKLLQRKQSQLVQEKDHLRGEHSKAVLarsKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVT 274
Cdd:TIGR02169 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEK---RLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELE 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 275 SHF---QVTLNDIQLQMEQHNERNAKLRLENVELAERLKKL---IEQYELR-----EEHIDKVFKHKDLQQQLVD----- 338
Cdd:TIGR02169 301 AEIaslERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELereIEEERKRrdkltEEYAELKEELEDLRAELEEvdkef 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 339 -------AKLQQAQEMLKEAEERHQREKEFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTF 411
Cdd:TIGR02169 381 aetrdelKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 189083696 412 KQEMEKMTKKIKKLEKETTVYRSRWESSNKALLEM-AEEKTLRDKELEG 459
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAeAQARASEERVRGG 509
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
281-490 |
9.66e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 9.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 281 LNDIQLQMEQHNERNAKLRLENVELAERLKKLIEQYELREEHIDKVfkhkDLQQQLVDAKLQQAQEMLKEAEERHQREKE 360
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL----EQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 361 FLLKEAVESQRMcelmkqqETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTVYRSRWESSN 440
Cdd:COG4942 105 ELAELLRALYRL-------GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 189083696 441 KALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTERNDLNKRVQDLTA 490
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
20-158 |
1.96e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.12 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 20 PGQREAGPEGAHgRPRQTAPGAEAEGSTSQAPGKTEGARAKASQSGALCDVSEELSRQLEDilstycvdnnqGGPGEEGA 99
Cdd:PRK07764 692 APAGAAPAQPAP-APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP-----------AGAPAQPP 759
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 189083696 100 QGEPTEPEDTEKSRTYAARNGEPEPgipvvngEKETSKGEPGTEEIRASDEVGDRDLRR 158
Cdd:PRK07764 760 PPPAPAPAAAPAAAPPPSPPSEEEE-------MAEDDAPSMDDEDRRDAEEVAMELLEE 811
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
96-488 |
2.79e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 96 EEGAQGEPTEPEDTEKSRTYAARNGEPEPGIPVVNGEKETSKGEPGTEEIRASDEVGDRDLRRPQEKKKAKGLGKEitll 175
Cdd:PTZ00121 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE---- 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 176 mqtlntlstPEEKLAALCKKYAELLEEHRNAQKQTKLLQRKQSQLVQEKDhlrgEHSKAVLARSKLESLCRELQRHNRSL 255
Cdd:PTZ00121 1375 ---------EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA----AKKKADEAKKKAEEKKKADEAKKKAE 1441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 256 KEEGVQRAREEEEKRKEVTshfqvtlNDIQLQMEQHNERNAKLRLENVELAERLKKLIEQYELREEHIDKVFKHKDLQQQ 335
Cdd:PTZ00121 1442 EAKKADEAKKKAEEAKKAE-------EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 336 LVDAKLQQAQEMLKEAEERHQREKeflLKEAVESQRMCELMKQQETHLKQQL--ALYTEKFEEFQNTLSKSSEVFTTFKQ 413
Cdd:PTZ00121 1515 AKKAEEAKKADEAKKAEEAKKADE---AKKAEEKKKADELKKAEELKKAEEKkkAEEAKKAEEDKNMALRKAEEAKKAEE 1591
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 189083696 414 EMEKMTKKIKKLEKETTVYRSRWESSNKALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTERNDLNKRVQDL 488
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
333-488 |
2.81e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 333 QQQLVDAKLQQAQEMLKEAEERH--QREKEFLLKEAvesQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTT 410
Cdd:PRK04863 507 EQRHLAEQLQQLRMRLSELEQRLrqQQRAERLLAEF---CKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMA 583
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 189083696 411 FKQEMEKMTKKIKKLEKETTVYRSRWESSNKaLLEMAEEKTLRDKELEGLQVKTQRLEklcRALQTERNDLNKRVQDL 488
Cdd:PRK04863 584 LRQQLEQLQARIQRLAARAPAWLAAQDALAR-LREQSGEEFEDSQDVTEYMQQLLERE---RELTVERDELAARKQAL 657
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
289-488 |
3.26e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 3.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 289 EQHNERNAKLRLENVELAERLKKlIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEMLKEAEERHQREKEFLLKEAVE 368
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQE-IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSE 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 369 SQRMCELMKQQET----------HLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTVYRSRWES 438
Cdd:TIGR04523 442 IKDLTNQDSVKELiiknldntreSLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISS 521
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 189083696 439 SNKALLEMAEEKTLRDKELEGLQ--VKTQRLEKLCRALQTERNDLNKRVQDL 488
Cdd:TIGR04523 522 LKEKIEKLESEKKEKESKISDLEdeLNKDDFELKKENLEKEIDEKNKEIEEL 573
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
339-514 |
3.80e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 3.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 339 AKLQQAQEMLKEAEERHQREKEFLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSevfttfkQEMEKM 418
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE-------ERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 419 TKKIKKLEKETTVYRSRWESSNKALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTERNDLNKRVQDLTAGGQGSLTD 498
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
170
....*....|....*..
gi 189083696 499 TGS-ERRPEAATASKEQ 514
Cdd:TIGR02168 833 IAAtERRLEDLEEQIEE 849
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-429 |
4.13e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 143 EEIRASDEVGDRD-LRRPQEKKKAKGLGKEitllmqtlNTLSTPEEKLAALCKKYAEllEEHRNAQKQTKLLQRKQSQLV 221
Cdd:PTZ00121 1525 DEAKKAEEAKKADeAKKAEEKKKADELKKA--------EELKKAEEKKKAEEAKKAE--EDKNMALRKAEEAKKAEEARI 1594
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 222 QEKDHLRGEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKEVTSHFQV----TLNDIQLQMEQHNERNAK 297
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELkkaeEENKIKAAEEAKKAEEDK 1674
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 298 LRLENVELAERLKKLIEQYELREEHIDKvfKHKDLQQQLVDAKlQQAQEMLKEAEERHQREKEFLLKEAVESQRMCELMK 377
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAK--KAEELKKKEAEEK-KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 189083696 378 QQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKET 429
Cdd:PTZ00121 1752 DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
283-396 |
5.22e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.38 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 283 DIQLQMEQ-HNERNAKL-----RLENVElaERLKKLIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEMLKEAEERHQ 356
Cdd:PRK12704 68 KLRNEFEKeLRERRNELqklekRLLQKE--ENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 189083696 357 REKEFLLKEAVEsqrmcELMKQQETHLKQQLALYTEKFEE 396
Cdd:PRK12704 146 RISGLTAEEAKE-----ILLEKVEEEARHEAAVLIKEIEE 180
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
333-488 |
5.47e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 5.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 333 QQQLVDAKLQQAQEMLKEAEER--HQREKEFLLKE-AVESQRMCELMKQQETHLKQQlalyTEKFEEFQNTLSKSSEVFT 409
Cdd:COG3096 506 SQQALAQRLQQLRAQLAELEQRlrQQQNAERLLEEfCQRIGQQLDAAEELEELLAEL----EAQLEELEEQAAEAVEQRS 581
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 189083696 410 TFKQEMEKMTKKIKKLEKETTVyrsrWESSNKALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTERNDLNKRVQDL 488
Cdd:COG3096 582 ELRQQLEQLRARIKELAARAPA----WLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQAL 656
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
194-495 |
5.85e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.57 E-value: 5.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 194 KKYAELLEEHRNAQKQTKLLQRKQSQLVQEKDH-LRGEHSKAVLARSKLESLCRELQRHNRSLKEEGVQRAREEEEKRKE 272
Cdd:pfam02463 170 KKKEALKKLIEETENLAELIIDLEELKLQELKLkEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 273 VtSHFQVTLNDIQLQME----QHNERNAKLRLENVELAERLKKLIEQYELREEHIDKVFKHKDLQQQLVDA-----KLQQ 343
Cdd:pfam02463 250 Q-EEIESSKQEIEKEEEklaqVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESekekkKAEK 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 344 AQEMLKEAEERHQREKEFL----LKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTF-------- 411
Cdd:pfam02463 329 ELKKEKEEIEELEKELKELeikrEAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKseeekeaq 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 412 -------KQEMEKMTKKIKKLEKETTVYRSRWESSNKALLEMAEEKTLR----DKELEGLQVKTQRLEKLCRALQTERND 480
Cdd:pfam02463 409 lllelarQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQElkllKDELELKKSEDLLKETQLVKLQEQLEL 488
|
330
....*....|....*
gi 189083696 481 LNKRVQDLTAGGQGS 495
Cdd:pfam02463 489 LLSRQKLEERSQKES 503
|
|
| PHA03185 |
PHA03185 |
UL14 tegument protein; Provisional |
507-556 |
6.79e-03 |
|
UL14 tegument protein; Provisional
Pssm-ID: 177553 [Multi-domain] Cd Length: 214 Bit Score: 38.08 E-value: 6.79e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 189083696 507 AATASKEQGVESPGAQPSSSPKATDTPGCpGAPSTETAGQTGPGEPTSAT 556
Cdd:PHA03185 156 SAPAVRPGDLSGPGSRPTSGPVAGGLPGG-GAPAPPTPPRPGPTDPASES 204
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
201-442 |
6.88e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.98 E-value: 6.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 201 EEHRNAQKQTKLLQRKQSQLVQEKDHLRGEHSKAVLARSKLESLCRELQRHNRSLKEEgvqrareeeekrkevtshfqvt 280
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE---------------------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 281 LNDIQLQMEQHNERNAKLRLENVELAERLKKLIEQYE-----------LREEHIDKVFKHKDLQQQLVDAKLQQAQEMLK 349
Cdd:COG4942 78 LAALEAELAELEKEIAELRAELEAQKEELAELLRALYrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 350 EAEERHQREKEfLLKEAVESQRMCELMKQQETHLKQQLALYTEKFEEFQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKET 429
Cdd:COG4942 158 DLAELAALRAE-LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
250
....*....|...
gi 189083696 430 TVYRSRWESSNKA 442
Cdd:COG4942 237 AAAAERTPAAGFA 249
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
322-491 |
7.64e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.23 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 322 HIDKVFKHK--DLQQQL--VDAKLQQAQEMLKeAEERHQREKEFLLKEAV-ESQRMCELMKQQETHLKQQLALYTEKFEE 396
Cdd:PHA02562 167 EMDKLNKDKirELNQQIqtLDMKIDHIQQQIK-TYNKNIEEQRKKNGENIaRKQNKYDELVEEAKTIKAEIEELTDELLN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 397 FQNTLSKSSEVFTTFKQEMEKMTKKIKKLEKETTVYR---------SRWESSNKALLEMAEEKTLRDKELEGLQVKTQRL 467
Cdd:PHA02562 246 LVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEkggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDEL 325
|
170 180
....*....|....*....|....
gi 189083696 468 EKlcraLQTERNDLNKRVQDLTAG 491
Cdd:PHA02562 326 EE----IMDEFNEQSKKLLELKNK 345
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
330-490 |
8.63e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.27 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 330 KDLQQQLVDAK--LQQAQEMLKEAEerhqREKEFLLKEAVESQRMCELmKQQETHLkqQLALYTEKFEEFQNTLSkssev 407
Cdd:TIGR02168 175 KETERKLERTRenLDRLEDILNELE----RQLKSLERQAEKAERYKEL-KAELREL--ELALLVLRLEELREELE----- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 408 ftTFKQEMEKMTKKIKKLEKETTVYRSRWESSNKALLEMAEEKTLRDKELEGLQVKTQRLEKLCRALQTERNDLNKRVQD 487
Cdd:TIGR02168 243 --ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
...
gi 189083696 488 LTA 490
Cdd:TIGR02168 321 LEA 323
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
304-490 |
9.53e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 38.76 E-value: 9.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 304 ELAERLKKLIEQYELREEHIDKVFKHKDLQQQLVDAKLQQAQEMLKEAEERHQREKEflLKEAVESQRmcELMKQQETHL 383
Cdd:COG1196 197 ELERQLEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEA--ELEELEAEL--AELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189083696 384 KQQLALYTEKFEEFQntlskssevfttfkQEMEKMTKKIKKLEKETTVYRSRWESSNKALLEMAEEKTLRDKELEGLQVK 463
Cdd:COG1196 273 RLELEELELELEEAQ--------------AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
170 180
....*....|....*....|....*..
gi 189083696 464 TQRLEKLCRALQTERNDLNKRVQDLTA 490
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEE 365
|
|
| |
