NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|193207596|ref|NP_001122895|]
View 

DUF281 domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK11907 super family cl36084
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
5-67 3.76e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


The actual alignment was detected with superfamily member PRK11907:

Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 37.53  E-value: 3.76e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 193207596   5 FLTTLLVLSATPTLSF----TTAPTGTSPTVDTSAVIAPNPESSPSQSTDSPSTASSTATEQSTIQT 67
Cdd:PRK11907  11 VALTLALLTASNPKLAqaeeIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSET 77
 
Name Accession Description Interval E-value
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
5-67 3.76e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 37.53  E-value: 3.76e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 193207596   5 FLTTLLVLSATPTLSF----TTAPTGTSPTVDTSAVIAPNPESSPSQSTDSPSTASSTATEQSTIQT 67
Cdd:PRK11907  11 VALTLALLTASNPKLAqaeeIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSET 77
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 13-74 5.85e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 36.82  E-value: 5.85e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 193207596   13 SATPTLSFTTAP--TGTSPTVDTSAVIAPNPESSPSQSTDSPSTASSTATEQSTIQTVPITSIT 74
Cdd:pfam05109 414 TTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPT 477
 
Name Accession Description Interval E-value
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
5-67 3.76e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 37.53  E-value: 3.76e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 193207596   5 FLTTLLVLSATPTLSF----TTAPTGTSPTVDTSAVIAPNPESSPSQSTDSPSTASSTATEQSTIQT 67
Cdd:PRK11907  11 VALTLALLTASNPKLAqaeeIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSET 77
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 13-74 5.85e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 36.82  E-value: 5.85e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 193207596   13 SATPTLSFTTAP--TGTSPTVDTSAVIAPNPESSPSQSTDSPSTASSTATEQSTIQTVPITSIT 74
Cdd:pfam05109 414 TTTHKVIFSKAPesTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPT 477
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH