|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
411-622 |
4.81e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 4.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 411 RKQSLEPDKADHIRAAVyqEWLEKKNVYLHEMHRIKRiESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKKIAAKK 490
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKA--EEDKKKADELKKAAAAKK-KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 491 RLEEKNKKKTEEENAVRKGEALQAFEKWKeKKLEYLKEKTRREKESERAKKQKEEEAVAEKKKDSVTAFERWSEKK-EAL 569
Cdd:PTZ00121 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAK-KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKaDEA 1539
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 208973284 570 LKQKEKEKINERRK-EELKRAEKKDKDKQAISEYEKWLEKKERQERIDRKQKKR 622
Cdd:PTZ00121 1540 KKAEEKKKADELKKaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
510-623 |
5.83e-06 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 47.78 E-value: 5.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 510 EALQAFEKWKEKKLEYLKEKTRREKEseraKKQKEEEAVAEKKKDSVTAFERWSEKKEALLKQKEKEKIN----ERRKEE 585
Cdd:pfam13904 52 QPLEAYENWLAAKQRQRQKELQAQKE----EREKEEQEAELRKRLAKEKYQEWLQRKARQQTKKREESHKqkaaESASKS 127
|
90 100 110
....*....|....*....|....*....|....*...
gi 208973284 586 LKRAEKKDKDKQAISEYEKWLEKKERQERIDRKQKKRH 623
Cdd:pfam13904 128 LAKPERKVSQEEAKEVLQEWERKKLEQQQRKREEEQRE 165
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
424-629 |
2.71e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 424 RAAVYQEWLEKKNVYLHEMhRIKRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKKIAAKKRLEEKNKKKTEEE 503
Cdd:COG1196 211 KAERYRELKEELKELEAEL-LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 504 NAVRKGEALQAfekwkEKKLEYLKEKtRREKESERAKKQKEEEAVAEKKKDSVTAFERWSEKKEALLKQKEKEKINERRK 583
Cdd:COG1196 290 EYELLAELARL-----EQDIARLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 208973284 584 EELKRAEKKDKDKQAISEYEKWLEKKERQERIDRKQKKRHSFLESE 629
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
446-614 |
1.60e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 40.98 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 446 KRIESENLRIQNEQKKAAKREEALASfEAWKAMKEKEAKKIAAKKRLEEKNKKKTEEENAvRKGEALQAFEKWKEKKLEY 525
Cdd:TIGR02794 46 GAVAQQANRIQQQKKPAAKKEQERQK-KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA-KQAEQAAKQAEEKQKQAEE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 526 LKEKTRREK----ESERAKKQKEE-EAVAEKKKDSVTAFERWSEKKEALLKQKEKEKINERRKEELKRAEKKDKDKQAIS 600
Cdd:TIGR02794 124 AKAKQAAEAkakaEAEAERKAKEEaAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAKA 203
|
170
....*....|....
gi 208973284 601 EYEKWLEKKERQER 614
Cdd:TIGR02794 204 KAAAEAAAKAEAEA 217
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
411-622 |
4.81e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 4.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 411 RKQSLEPDKADHIRAAVyqEWLEKKNVYLHEMHRIKRiESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKKIAAKK 490
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKA--EEDKKKADELKKAAAAKK-KADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 491 RLEEKNKKKTEEENAVRKGEALQAFEKWKeKKLEYLKEKTRREKESERAKKQKEEEAVAEKKKDSVTAFERWSEKK-EAL 569
Cdd:PTZ00121 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAK-KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKaDEA 1539
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 208973284 570 LKQKEKEKINERRK-EELKRAEKKDKDKQAISEYEKWLEKKERQERIDRKQKKR 622
Cdd:PTZ00121 1540 KKAEEKKKADELKKaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
510-623 |
5.83e-06 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 47.78 E-value: 5.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 510 EALQAFEKWKEKKLEYLKEKTRREKEseraKKQKEEEAVAEKKKDSVTAFERWSEKKEALLKQKEKEKIN----ERRKEE 585
Cdd:pfam13904 52 QPLEAYENWLAAKQRQRQKELQAQKE----EREKEEQEAELRKRLAKEKYQEWLQRKARQQTKKREESHKqkaaESASKS 127
|
90 100 110
....*....|....*....|....*....|....*...
gi 208973284 586 LKRAEKKDKDKQAISEYEKWLEKKERQERIDRKQKKRH 623
Cdd:pfam13904 128 LAKPERKVSQEEAKEVLQEWERKKLEQQQRKREEEQRE 165
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
407-620 |
1.21e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 407 QKPPRKQSLEPDKADHIRAAVYQEWLEKKNV--YLHEMHRIKRIESENLRIQNEQKKAA----------KREEALASFEA 474
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAEEARIeeVMKLYEEEKKMKAEEAKKAEEAKIKAeelkkaeeekKKVEQLKKKEA 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 475 WKAMKEKEAKKIAAKKRLEEKNKKKTEEENAvRKGEALQAFEKWKEKKLEYLKEKTRREKESERAKKQKEEEA------- 547
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDK-KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKkkaeelk 1722
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 208973284 548 -VAEKKKDSVTAFERWSEK-----KEALLKQKEKEKINERRKEELKRAEKKDKDKQAISEYEKWLEKKERQERIDRKQK 620
Cdd:PTZ00121 1723 kAEEENKIKAEEAKKEAEEdkkkaEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
433-629 |
2.51e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 2.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 433 EKKNVYLHEMHRIKRIES---ENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKKIAAKKrleeKNKKKTEEENAVRKG 509
Cdd:PTZ00121 1574 EDKNMALRKAEEAKKAEEariEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK----VEQLKKKEAEEKKKA 1649
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 510 EALQAFEKWKEKKLEYLKEKTRREK-ESERAKKQKEEEavaEKKKDSVTAFERWSEKKEALLKQKEKEKineRRKEELKR 588
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKkKAEEAKKAEEDE---KKAAEALKKEAEEAKKAEELKKKEAEEK---KKAEELKK 1723
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 208973284 589 AEKKDKDKQAISEYEKWLEKKERQE-RIDRKQKKRHSFLESE 629
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKAEEaKKDEEEKKKIAHLKKE 1765
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
509-645 |
2.92e-05 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 45.85 E-value: 2.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 509 GEALQAFEKWKEKKLEYLKEKTRREKESERAKKQKEEEAVAEKKKdsvTAFERW-SEKKEallkQKEKEKINERRKEELK 587
Cdd:pfam13904 10 GGEKQPEEESSKHRVPSLSLDSSSQSSSLTYARKLEGLKLERQPL---EAYENWlAAKQR----QRQKELQAQKEEREKE 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 208973284 588 RAEKKDKDKQAISEYEKWLEKKERQERIDRKQKKRHSFLESETHPPWSPPSRTAPSKV 645
Cdd:pfam13904 83 EQEAELRKRLAKEKYQEWLQRKARQQTKKREESHKQKAAESASKSLAKPERKVSQEEA 140
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
512-591 |
7.35e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 7.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 512 LQAFEKWKEKKLEYLKEKTRREKE---SERAKKQKEE-----EAVAEKKKDSVTAFERWSEKKEALLKQKEKEkINERRK 583
Cdd:PRK12704 60 LEAKEEIHKLRNEFEKELRERRNElqkLEKRLLQKEEnldrkLELLEKREEELEKKEKELEQKQQELEKKEEE-LEELIE 138
|
....*...
gi 208973284 584 EELKRAEK 591
Cdd:PRK12704 139 EQLQELER 146
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
434-622 |
1.46e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 434 KKNVYLHEMHRIKRIES----ENLRIQNEQKKA--AKREEALASFEAWKAMKEKEAKKIAAKKRLEEKNKKKTEEENAVR 507
Cdd:PTZ00121 1188 RKAEELRKAEDARKAEAarkaEEERKAEEARKAedAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFAR 1267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 508 KGEALQAFEKWKEKKLEYLKEKtrreKESERAKKQKEEEAVAEKKKDSVTAFERWSEKKEALLKQKEKEKINERRKEELK 587
Cdd:PTZ00121 1268 RQAAIKAEEARKADELKKAEEK----KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
170 180 190
....*....|....*....|....*....|....*.
gi 208973284 588 RAE-KKDKDKQAISEYEKWLEKKERQERIDRKQKKR 622
Cdd:PTZ00121 1344 AAEaAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
424-629 |
2.71e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 424 RAAVYQEWLEKKNVYLHEMhRIKRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKKIAAKKRLEEKNKKKTEEE 503
Cdd:COG1196 211 KAERYRELKEELKELEAEL-LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 504 NAVRKGEALQAfekwkEKKLEYLKEKtRREKESERAKKQKEEEAVAEKKKDSVTAFERWSEKKEALLKQKEKEKINERRK 583
Cdd:COG1196 290 EYELLAELARL-----EQDIARLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 208973284 584 EELKRAEKKDKDKQAISEYEKWLEKKERQERIDRKQKKRHSFLESE 629
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
446-618 |
5.87e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 5.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 446 KRIESENLRIQNEQKKA-AKREEALASFEAWKAMKEKEAKKIAAKKRLEEKNKKKTEEENAVRKGEALQAFEKWKEKKLE 524
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAeAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 525 YLKEKTRREKESERAKKQKEEEAVAEKKKDSVTAferwSEKKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISEYEK 604
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
|
170
....*....|....
gi 208973284 605 WLEKKERQERIDRK 618
Cdd:PTZ00121 1485 ADEAKKKAEEAKKK 1498
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
411-622 |
6.67e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 411 RKQSLEPDKADHIRAAVYQEWLEKKNVyLHEMHRIKRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKKIAAKK 490
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARM-AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 491 RleEKNKKKTEEENAVRKGEALQAFEKWKEKKLEYLKEKTRREKESERAKKQKEEEA---VAEKKKDSVTAFERWSEKKE 567
Cdd:PTZ00121 1315 K--KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAekkKEEAKKKADAAKKKAEEKKK 1392
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 208973284 568 ALLKQKEKEKiNERRKEELKRAE----------KKDKDKQAISEYEKWLEKKERQERIDRKQKKR 622
Cdd:PTZ00121 1393 ADEAKKKAEE-DKKKADELKKAAaakkkadeakKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
525-631 |
7.90e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 42.39 E-value: 7.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 525 YLKEKTRREKESERAKKQKEEEAVAEKKkdsvtafERWSEKKEALLK-QKEKEKINERRKEELKRAEKK--DKDKQAISE 601
Cdd:PRK12705 24 LLKKRQRLAKEAERILQEAQKEAEEKLE-------AALLEAKELLLReRNQQRQEARREREELQREEERlvQKEEQLDAR 96
|
90 100 110
....*....|....*....|....*....|
gi 208973284 602 YEKWLEKKERQERIDRKQKKRHSFLESETH 631
Cdd:PRK12705 97 AEKLDNLENQLEEREKALSARELELEELEK 126
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
345-622 |
1.24e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 345 AEPAKKTNEVKTTKNKKTTNNRVSSA-SGRLMTSEFLKRSGPTKRSPSAATSSHYLGSLKVLDQKPPRKQSLEPDKADHI 423
Cdd:PTZ00121 1292 ADEAKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 424 RAavyQEWLEKKNVYLHEMHRIKRIESENLRIQNEQKKA---AKREEALASFEAWKAMKEKEAKKIAAKKRLEEKNKKKT 500
Cdd:PTZ00121 1372 KK---EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAdelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 501 EEENAVRKGEALQAFEKWKE-KKLEYLKEKTRREKESERAKKQKEEeavAEKKKDSVTAFERwSEKKEALLKQ-KEKEKI 578
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEaKKADEAKKKAEEAKKADEAKKKAEE---AKKKADEAKKAAE-AKKKADEAKKaEEAKKA 1524
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 208973284 579 NERRK-EELKRAE--KKDKDKQAISEYEKWLEKKERQERIDRKQKKR 622
Cdd:PTZ00121 1525 DEAKKaEEAKKADeaKKAEEKKKADELKKAEELKKAEEKKKAEEAKK 1571
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
446-614 |
1.60e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 40.98 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 446 KRIESENLRIQNEQKKAAKREEALASfEAWKAMKEKEAKKIAAKKRLEEKNKKKTEEENAvRKGEALQAFEKWKEKKLEY 525
Cdd:TIGR02794 46 GAVAQQANRIQQQKKPAAKKEQERQK-KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA-KQAEQAAKQAEEKQKQAEE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 526 LKEKTRREK----ESERAKKQKEE-EAVAEKKKDSVTAFERWSEKKEALLKQKEKEKINERRKEELKRAEKKDKDKQAIS 600
Cdd:TIGR02794 124 AKAKQAAEAkakaEAEAERKAKEEaAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEAAKA 203
|
170
....*....|....
gi 208973284 601 EYEKWLEKKERQER 614
Cdd:TIGR02794 204 KAAAEAAAKAEAEA 217
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
429-619 |
2.66e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 429 QEWLEKKNVYLHEMHrIKRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKKIAAKKRLEEKNKKKTEEENAVRK 508
Cdd:COG4717 55 ADELFKPQGRKPELN-LKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 509 GEALQAFEKWKEKKLEYLKEKTRREKESERAKKQKEEEaVAEKKKDSVTAFERWSEKKEALLKQ--KEKEKINERR---K 583
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAE-LAELQEELEELLEQLSLATEEELQDlaEELEELQQRLaelE 212
|
170 180 190
....*....|....*....|....*....|....*..
gi 208973284 584 EELKRAEKKDKD-KQAISEYEKWLEKKERQERIDRKQ 619
Cdd:COG4717 213 EELEEAQEELEElEEELEQLENELEAAALEERLKEAR 249
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
520-610 |
2.71e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 520 EKKLEYLK-EKTRREKES-----ERAKKQKEEEAVAEKKKDSVTAfeRWSEKKEALLKQKEKEKINERRKEELKRAEKKD 593
Cdd:COG0542 417 ERRLEQLEiEKEALKKEQdeasfERLAELRDELAELEEELEALKA--RWEAEKELIEEIQELKEELEQRYGKIPELEKEL 494
|
90
....*....|....*..
gi 208973284 594 KDKQAISEYEKWLEKKE 610
Cdd:COG0542 495 AELEEELAELAPLLREE 511
|
|
| CCDC47 |
pfam07946 |
PAT complex subunit CCDC47; This family represents CCDC47 proteins which are a component of ... |
564-614 |
3.22e-03 |
|
PAT complex subunit CCDC47; This family represents CCDC47 proteins which are a component of the PAT complex, an endoplasmic reticulum (ER)-resident membrane multiprotein complex that facilitates multi-pass membrane proteins insertion into membranes. The PAT complex, formed by CCDC47 and Asterix proteins, acts as an intramembrane chaperone by directly interacting with nascent transmembrane domains (TMDs), releasing its substrates upon correct folding, and is needed for optimal biogenesis of multi-pass membrane proteins. CCDC47 is required to maintain the stability of Asterix. CCDC47 is associated with various membrane-associated processes and is component of a ribosome-associated ER translocon complex involved in multi-pass membrane protein transport into the ER membrane and biogenesis. It is also involved in the regulation of calcium ion homeostasis in the ER, being also required for proper protein degradation via the ERAD (ER-associated degradation) pathway.
Pssm-ID: 462322 Cd Length: 323 Bit Score: 40.24 E-value: 3.22e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 208973284 564 EKKEALLKQKEKEKINERRKEELKRAEKKDKDKQAISEYEKWLEK-KERQER 614
Cdd:pfam07946 271 EKIKKAAEEERAEEAQEKKEEAKKKEREEKLAKLSPEEQRKYEEKeRKKEQR 322
|
|
| rpsP |
PRK14521 |
30S ribosomal protein S16; Provisional |
506-601 |
3.34e-03 |
|
30S ribosomal protein S16; Provisional
Pssm-ID: 237744 [Multi-domain] Cd Length: 186 Bit Score: 38.99 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 506 VRKG-----EALQAFEKWKEKK---LEYLKEKTRREKESERAKKQKEEEAVAEKKKDSVTaferwsEKKEALLKQKEKEK 577
Cdd:PRK14521 89 VAKGafteaQAEAKFEAWKEEKegkVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVA------EKKAAEAAAVAAEE 162
|
90 100
....*....|....*....|....
gi 208973284 578 INERRKEELKRAEKKDKDKQAISE 601
Cdd:PRK14521 163 AAAAEEEEAEEAPAEEAPAEESAE 186
|
|
| CCDC34 |
pfam13904 |
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ... |
507-608 |
4.26e-03 |
|
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.
Pssm-ID: 464032 [Multi-domain] Cd Length: 221 Bit Score: 39.30 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 507 RKGEALQAFEKWKEKKlEYLKEKTRREKESERAKKQKEEEAVAEKKKDSVTA----FERWSEKKEALLKQKEKEKINERR 582
Cdd:pfam13904 89 RKRLAKEKYQEWLQRK-ARQQTKKREESHKQKAAESASKSLAKPERKVSQEEakevLQEWERKKLEQQQRKREEEQREQL 167
|
90 100
....*....|....*....|....*.
gi 208973284 583 KEELKRAEKKDKDKQAiseYEKWLEK 608
Cdd:pfam13904 168 KKEEEEQERKQLAEKA---WQKWMKN 190
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
519-623 |
4.61e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 519 KEKKLEYLKEKTRREKESERAKKQKEEEAVAEKKKDSVTAFERWSEKKEALLKQKEKEKInERRKEELKRAEKKDKDKQA 598
Cdd:pfam02463 208 KALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKL-AQVLKENKEEEKEKKLQEE 286
|
90 100
....*....|....*....|....*
gi 208973284 599 ISEYEKWLEKKERQERIDRKQKKRH 623
Cdd:pfam02463 287 ELKLLAKEEEELKSELLKLERRKVD 311
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
507-621 |
5.54e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 39.44 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 507 RKGEALQAFEKWKEKKLEYLKEKTRREKESERAKKQKEEEAVAEKKKDSVTAFERWSEKKEALLKQKEKEKINERRKEEL 586
Cdd:TIGR02794 69 RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAERKAKEEA 148
|
90 100 110
....*....|....*....|....*....|....*
gi 208973284 587 KRAEKKDKDKQAISEYEKWLEKKERQERIDRKQKK 621
Cdd:TIGR02794 149 AKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKA 183
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
520-628 |
6.79e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.38 E-value: 6.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 208973284 520 EKKLEYLKEKTRR-----EKESERAKKQKEEEAVAEKKK------DSVTAFERWSEKKEALLKQKEkEKInERRKEELKR 588
Cdd:PRK12704 30 EAKIKEAEEEAKRileeaKKEAEAIKKEALLEAKEEIHKlrnefeKELRERRNELQKLEKRLLQKE-ENL-DRKLELLEK 107
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 208973284 589 AEKK-DKDKQAISEYEKWLEKKErqERIDRKQKKRHSFLES 628
Cdd:PRK12704 108 REEElEKKEKELEQKQQELEKKE--EELEELIEEQLQELER 146
|
|
| |
