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Conserved domains on  [gi|223633941|ref|NP_001138668|]
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spermatogenesis-associated protein 31A6 [Homo sapiens]

Protein Classification

DUF4599 and FAM75 domain-containing protein( domain architecture ID 10634069)

protein containing domains DUF4599, PHA03307, and FAM75

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FAM75 pfam14650
FAM75 family;
396-750 9.57e-136

FAM75 family;


:

Pssm-ID: 464237 [Multi-domain]  Cd Length: 382  Bit Score: 420.98  E-value: 9.57e-136
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   396 QKCSDPRLLQESFWKNYSQLFWGLPSLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPLSH- 474
Cdd:pfam14650    1 QQLSYPKTLEDHLQQKYSQLFWGLPSLHSESLVATALVSRSSSSLESPSVLFNGISNASPVQMQAQESPLLPQPQPLPLp 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   475 ---RQPFISSTPQFLPTPMAQAEAQAHLQSSFPVLSPAFPSLIKNTGVACPASQNKVQALSLPETQHPEWPLLRKQLEGR 551
Cdd:pfam14650   81 evqPQPLPQTLPQSQPLPLAQAQTQAHLQSPLPILPPSSLPQIRDCGVSFHRSQNEAQSLIPTEIQHLEWHLLQKQQESL 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   552 LALPSRVQKSQDVFSVSTPNLPQESL-------TSILPENFPVSPELRRQLEQHIKKWIIQH-WGNLGRIQESLDLMQLR 623
Cdd:pfam14650  161 WGLPSVVQKSQEAFCPPAPNLPLVSQaskahvpVSILPGDFPISSELQKKLEQHLRKRLIQHrWGLPRRIQESLELMQPQ 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   624 DESPGTSQAKGKPSPWQSSTSTGESSKEAQKV--------------KFQLERDLCPHLGQILGETPQNLSR-DMKSFPRK 688
Cdd:pfam14650  241 GELPETSQSKGKHGLSQISVFKGESSKDLQKVelsqpgsfhekgseKFQLEKDPGKNLGQILGKGPKDLSRsDSESSSVK 320

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 223633941   689 VLGVTSEESERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVRVRRSW 750
Cdd:pfam14650  321 VLGSDSEESERSLRGSLSGDSSSVSRRSLDQKHLENILKAHLSKKLGQISEGRIPVTVCRSW 382
DUF4599 pfam15371
Domain of unknown function (DUF4599); The function of this family of eukaryotic proteins is ...
 76-157 6.54e-15

Domain of unknown function (DUF4599); The function of this family of eukaryotic proteins is not known.


:

Pssm-ID: 464680 [Multi-domain]  Cd Length: 88  Bit Score: 71.20  E-value: 6.54e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941    76 MKNHSLRAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQS-SHEPMEDAAPILSPLAS 154
Cdd:pfam15371    6 KKSGTLKACRDCQRELEEARKLISLLQSSLGWLPDEGSFRQLLCPDPSCEVCNAAPAEIQQLlSGEPLEDAAPSVSPSAS 85


                   ...
gi 223633941   155 PDP 157
Cdd:pfam15371   86 TAP 88
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 87-274 9.86e-07

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.64  E-value: 9.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   87 CPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLA 166
Cdd:PHA03307   62 CDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPV 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  167 STPSPGPMTTSVSSLSAS--------QPPEPSLPLehPSPEPPALFPHPPHTPDPLACSPPPPKGftAPPLRDSTLITPS 238
Cdd:PHA03307  142 GSPGPPPAASPPAAGASPaavasdaaSSRQAALPL--SSPEETARAPSSPPAEPPPSTPPAAASP--RPPRRSSPISASA 217

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 223633941  239 HCDSVALPLGTVPQSLSPHEDLVASVPAISGLGGSN 274
Cdd:PHA03307  218 SSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEN 253
 
Name Accession Description Interval E-value
FAM75 pfam14650
FAM75 family;
396-750 9.57e-136

FAM75 family;


Pssm-ID: 464237 [Multi-domain]  Cd Length: 382  Bit Score: 420.98  E-value: 9.57e-136
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   396 QKCSDPRLLQESFWKNYSQLFWGLPSLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPLSH- 474
Cdd:pfam14650    1 QQLSYPKTLEDHLQQKYSQLFWGLPSLHSESLVATALVSRSSSSLESPSVLFNGISNASPVQMQAQESPLLPQPQPLPLp 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   475 ---RQPFISSTPQFLPTPMAQAEAQAHLQSSFPVLSPAFPSLIKNTGVACPASQNKVQALSLPETQHPEWPLLRKQLEGR 551
Cdd:pfam14650   81 evqPQPLPQTLPQSQPLPLAQAQTQAHLQSPLPILPPSSLPQIRDCGVSFHRSQNEAQSLIPTEIQHLEWHLLQKQQESL 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   552 LALPSRVQKSQDVFSVSTPNLPQESL-------TSILPENFPVSPELRRQLEQHIKKWIIQH-WGNLGRIQESLDLMQLR 623
Cdd:pfam14650  161 WGLPSVVQKSQEAFCPPAPNLPLVSQaskahvpVSILPGDFPISSELQKKLEQHLRKRLIQHrWGLPRRIQESLELMQPQ 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   624 DESPGTSQAKGKPSPWQSSTSTGESSKEAQKV--------------KFQLERDLCPHLGQILGETPQNLSR-DMKSFPRK 688
Cdd:pfam14650  241 GELPETSQSKGKHGLSQISVFKGESSKDLQKVelsqpgsfhekgseKFQLEKDPGKNLGQILGKGPKDLSRsDSESSSVK 320

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 223633941   689 VLGVTSEESERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVRVRRSW 750
Cdd:pfam14650  321 VLGSDSEESERSLRGSLSGDSSSVSRRSLDQKHLENILKAHLSKKLGQISEGRIPVTVCRSW 382
DUF4599 pfam15371
Domain of unknown function (DUF4599); The function of this family of eukaryotic proteins is ...
 76-157 6.54e-15

Domain of unknown function (DUF4599); The function of this family of eukaryotic proteins is not known.


Pssm-ID: 464680 [Multi-domain]  Cd Length: 88  Bit Score: 71.20  E-value: 6.54e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941    76 MKNHSLRAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQS-SHEPMEDAAPILSPLAS 154
Cdd:pfam15371    6 KKSGTLKACRDCQRELEEARKLISLLQSSLGWLPDEGSFRQLLCPDPSCEVCNAAPAEIQQLlSGEPLEDAAPSVSPSAS 85


                   ...
gi 223633941   155 PDP 157
Cdd:pfam15371   86 TAP 88
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 87-274 9.86e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.64  E-value: 9.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   87 CPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLA 166
Cdd:PHA03307   62 CDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPV 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  167 STPSPGPMTTSVSSLSAS--------QPPEPSLPLehPSPEPPALFPHPPHTPDPLACSPPPPKGftAPPLRDSTLITPS 238
Cdd:PHA03307  142 GSPGPPPAASPPAAGASPaavasdaaSSRQAALPL--SSPEETARAPSSPPAEPPPSTPPAAASP--RPPRRSSPISASA 217

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 223633941  239 HCDSVALPLGTVPQSLSPHEDLVASVPAISGLGGSN 274
Cdd:PHA03307  218 SSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEN 253
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 106-301 8.21e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.22  E-value: 8.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   106 GPHLDKGDfgqLSGPDPPGEVGERAPDGASQSSHEP-MEDAAPIL----SPLASPDPQAKHPQDLASTPSP---GPMTTS 177
Cdd:pfam05109  465 GPTVSTAD---VTSPTPAGTTSGASPVTPSPSPRDNgTESKAPDMtsptSAVTTPTPNATSPTPAVTTPTPnatSPTLGK 541

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   178 VSSLSASQPPEPSLPLEHP---SPEPPALFP--------HPPHTPDPLACSP--------------------------PP 220
Cdd:pfam05109  542 TSPTSAVTTPTPNATSPTPavtTPTPNATIPtlgktsptSAVTTPTPNATSPtvgetspqanttnhtlggtsstpvvtSP 621

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   221 PKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSP--------HEDLVAS--------VPAISGLGGSNSHVSASS--- 281
Cdd:pfam05109  622 PKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPstsdnstsHMPLLTSahptggenITQVTPASTSTHHVSTSSpap 701

                          250       260
                   ....*....|....*....|
gi 223633941   282 RWQETARTSCAFNSSVQQDP 301
Cdd:pfam05109  702 RPGTTSQASGPGNSSTSTKP 721
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 78-231 3.08e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 3.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   78 NHSLRAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQS-SHEPMEDAAPILSPLASPD 156
Cdd:PHA03307  760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRkSRSHTPDGGSESSGPARPP 839

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  157 PQAKHPQDLASTPSPGPMTTSV----SSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPDPLACSPPPPK--GFTAPPLR 230
Cdd:PHA03307  840 GAAARPPPARSSESSKSKPAAAggraRGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPrvKLGPMPPG 919


                  .
gi 223633941  231 D 231
Cdd:PHA03307  920 G 920
 
Name Accession Description Interval E-value
FAM75 pfam14650
FAM75 family;
396-750 9.57e-136

FAM75 family;


Pssm-ID: 464237 [Multi-domain]  Cd Length: 382  Bit Score: 420.98  E-value: 9.57e-136
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   396 QKCSDPRLLQESFWKNYSQLFWGLPSLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPLSH- 474
Cdd:pfam14650    1 QQLSYPKTLEDHLQQKYSQLFWGLPSLHSESLVATALVSRSSSSLESPSVLFNGISNASPVQMQAQESPLLPQPQPLPLp 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   475 ---RQPFISSTPQFLPTPMAQAEAQAHLQSSFPVLSPAFPSLIKNTGVACPASQNKVQALSLPETQHPEWPLLRKQLEGR 551
Cdd:pfam14650   81 evqPQPLPQTLPQSQPLPLAQAQTQAHLQSPLPILPPSSLPQIRDCGVSFHRSQNEAQSLIPTEIQHLEWHLLQKQQESL 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   552 LALPSRVQKSQDVFSVSTPNLPQESL-------TSILPENFPVSPELRRQLEQHIKKWIIQH-WGNLGRIQESLDLMQLR 623
Cdd:pfam14650  161 WGLPSVVQKSQEAFCPPAPNLPLVSQaskahvpVSILPGDFPISSELQKKLEQHLRKRLIQHrWGLPRRIQESLELMQPQ 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   624 DESPGTSQAKGKPSPWQSSTSTGESSKEAQKV--------------KFQLERDLCPHLGQILGETPQNLSR-DMKSFPRK 688
Cdd:pfam14650  241 GELPETSQSKGKHGLSQISVFKGESSKDLQKVelsqpgsfhekgseKFQLEKDPGKNLGQILGKGPKDLSRsDSESSSVK 320

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 223633941   689 VLGVTSEESERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVRVRRSW 750
Cdd:pfam14650  321 VLGSDSEESERSLRGSLSGDSSSVSRRSLDQKHLENILKAHLSKKLGQISEGRIPVTVCRSW 382
DUF4599 pfam15371
Domain of unknown function (DUF4599); The function of this family of eukaryotic proteins is ...
 76-157 6.54e-15

Domain of unknown function (DUF4599); The function of this family of eukaryotic proteins is not known.


Pssm-ID: 464680 [Multi-domain]  Cd Length: 88  Bit Score: 71.20  E-value: 6.54e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941    76 MKNHSLRAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQS-SHEPMEDAAPILSPLAS 154
Cdd:pfam15371    6 KKSGTLKACRDCQRELEEARKLISLLQSSLGWLPDEGSFRQLLCPDPSCEVCNAAPAEIQQLlSGEPLEDAAPSVSPSAS 85


                   ...
gi 223633941   155 PDP 157
Cdd:pfam15371   86 TAP 88
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 87-274 9.86e-07

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 53.64  E-value: 9.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   87 CPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLA 166
Cdd:PHA03307   62 CDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPV 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  167 STPSPGPMTTSVSSLSAS--------QPPEPSLPLehPSPEPPALFPHPPHTPDPLACSPPPPKGftAPPLRDSTLITPS 238
Cdd:PHA03307  142 GSPGPPPAASPPAAGASPaavasdaaSSRQAALPL--SSPEETARAPSSPPAEPPPSTPPAAASP--RPPRRSSPISASA 217

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 223633941  239 HCDSVALPLGTVPQSLSPHEDLVASVPAISGLGGSN 274
Cdd:PHA03307  218 SSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEN 253
PHA03247 PHA03247
large tegument protein UL36; Provisional
 116-323 1.99e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.63  E-value: 1.99e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  116 QLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVS--SLSASQPPEPSLPL 193
Cdd:PHA03247 2836 PTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFAlpPDQPERPPQPQAPP 2915

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  194 E--HPSPEPPALFPHPPHTPDPLACSPPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVPAISGLG 271
Cdd:PHA03247 2916 PpqPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPP 2995

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 223633941  272 GSNSHVSASSRWQetarTSCAFNSSVQQDPLS----RHPP-ETCQMEAGSLFLLSSD 323
Cdd:PHA03247 2996 LTGHSLSRVSSWA----SSLALHEETDPPPVSlkqtLWPPdDTEDSDADSLFDSDSE 3048
PHA03247 PHA03247
large tegument protein UL36; Provisional
 116-229 9.85e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.32  E-value: 9.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  116 QLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQP--PEPSLPL 193
Cdd:PHA03247 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESREslPSPWDPA 2805

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 223633941  194 EHPSP-------EPPALFPHP--PHTPDPLACSPPPPKGFTAPPL 229
Cdd:PHA03247 2806 DPPAAvlapaaaLPPAASPAGplPPPTSAQPTAPPPPPGPPPPSL 2850
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 106-301 8.21e-05

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 47.22  E-value: 8.21e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   106 GPHLDKGDfgqLSGPDPPGEVGERAPDGASQSSHEP-MEDAAPIL----SPLASPDPQAKHPQDLASTPSP---GPMTTS 177
Cdd:pfam05109  465 GPTVSTAD---VTSPTPAGTTSGASPVTPSPSPRDNgTESKAPDMtsptSAVTTPTPNATSPTPAVTTPTPnatSPTLGK 541

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   178 VSSLSASQPPEPSLPLEHP---SPEPPALFP--------HPPHTPDPLACSP--------------------------PP 220
Cdd:pfam05109  542 TSPTSAVTTPTPNATSPTPavtTPTPNATIPtlgktsptSAVTTPTPNATSPtvgetspqanttnhtlggtsstpvvtSP 621

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   221 PKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSP--------HEDLVAS--------VPAISGLGGSNSHVSASS--- 281
Cdd:pfam05109  622 PKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPstsdnstsHMPLLTSahptggenITQVTPASTSTHHVSTSSpap 701

                          250       260
                   ....*....|....*....|
gi 223633941   282 RWQETARTSCAFNSSVQQDP 301
Cdd:pfam05109  702 RPGTTSQASGPGNSSTSTKP 721
PHA03247 PHA03247
large tegument protein UL36; Provisional
 54-237 1.33e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 1.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   54 PPSPSPGKRKCPVGRRRRPRGRMKNHSLRAGRECPRGLEETSDLLSQLQSLLGPhldkgdfgqLSGPDPPGEVGERAPDG 133
Cdd:PHA03247 2722 PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAP---------AAGPPRRLTRPAVASLS 2792

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  134 ASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLE---------------HPSP 198
Cdd:PHA03247 2793 ESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsvapggdvrrrppsRSPA 2872

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 223633941  199 EPPALFPHPPHTPDPLACSPPPPKGFTAPPLRDSTLITP 237
Cdd:PHA03247 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP 2911
PHA03247 PHA03247
large tegument protein UL36; Provisional
 53-256 3.70e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 3.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   53 DPPSPSPGKRKCPVGRRRRPRGRMKNHSLRAGRECPrgleetSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPd 132
Cdd:PHA03247 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL------PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP- 2772

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  133 gASQSSHEPMEDAAPILSPLASPDPQAKHPQDLAstPSPGPMTTSVSSLSASQPPEPslplehPSPEPPALFPHPPHTPD 212
Cdd:PHA03247 2773 -AAPAAGPPRRLTRPAVASLSESRESLPSPWDPA--DPPAAVLAPAAALPPAASPAG------PLPPPTSAQPTAPPPPP 2843

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 223633941  213 PLACSPPPPKGFTAP--PLRD--------STLITPSHCDSVALPLGTVPQSLSP 256
Cdd:PHA03247 2844 GPPPPSLPLGGSVAPggDVRRrppsrspaAKPAAPARPPVRRLARPAVSRSTES 2897
PHA03247 PHA03247
large tegument protein UL36; Provisional
 54-256 5.46e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 5.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   54 PPSPSPGKRKCPVGRRRRPRGRMKNHSLRAGREC--PRGLEETSDLLSQLQSLLGPHLDK-----GDFGQLSGPDPPGEV 126
Cdd:PHA03247 2628 PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVsrPRRARRLGRAAQASSPPQRPRRRAarptvGSLTSLADPPPPPPT 2707

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  127 GERAPdgasqsshEPMEDAAPIlsPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPA--LF 204
Cdd:PHA03247 2708 PEPAP--------HALVSATPL--PPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAapAA 2777

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 223633941  205 PHPPHTPDPLACS----------PPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSP 256
Cdd:PHA03247 2778 GPPRRLTRPAVASlsesreslpsPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP 2839
PHA03247 PHA03247
large tegument protein UL36; Provisional
 54-265 5.84e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 5.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   54 PPSPSPGKrkCPVGRRRRPRGRMKNHSLRAGREcprGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERApdg 133
Cdd:PHA03247 2766 PPAPAPPA--APAAGPPRRLTRPAVASLSESRE---SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT--- 2837

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  134 ASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPG-PMTTSVSSLSASQPPEPSLPLEHPsPEPPALFPHPPHTPD 212
Cdd:PHA03247 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAaPARPPVRRLARPAVSRSTESFALP-PDQPERPPQPQAPPP 2916

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 223633941  213 PLACSPPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVP 265
Cdd:PHA03247 2917 PQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVP 2969
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 120-268 8.54e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 8.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  120 PDPPGEVGERAPD-GASQSSHEPMEDAAPILSPLASPDPQakhPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSP 198
Cdd:PHA03307   44 VSDSAELAAVTVVaGAAACDRFEPPTGPPPGPGTEAPANE---SRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPT 120

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  199 EPPALfphPPHTPDPLACSPPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVPAIS 268
Cdd:PHA03307  121 PPPAS---PPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS 187
PHA03247 PHA03247
large tegument protein UL36; Provisional
 115-309 8.89e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 8.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  115 GQLSGPDPPGEVGERAPDGASQSSHEpmEDAAPILSPLASPDPQAKHPqdlastPSPGPMTTSVSSLSASQPPEPSlple 194
Cdd:PHA03247 2640 PHPPPTVPPPERPRDDPAPGRVSRPR--RARRLGRAAQASSPPQRPRR------RAARPTVGSLTSLADPPPPPPT---- 2707

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  195 hPSPEPPALFPHPPHTPDPLA---CSPPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVA------SVP 265
Cdd:PHA03247 2708 -PEPAPHALVSATPLPPGPAAarqASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAgpprrlTRP 2786

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 223633941  266 AISGLGGSNSHVSASSRWQETARTSCAFNSSV--QQDPLSRHPPET 309
Cdd:PHA03247 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALppAASPAGPLPPPT 2832
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 120-266 1.11e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  120 PDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDL----------ASTPSPGPMTTSVSSLSASQPPEP 189
Cdd:PRK07764  615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPdasdggdgwpAKAGGAAPAAPPPAPAPAAPAAPA 694

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  190 SLPLEHPSPEPPALfPHPPHTPDPLACSPPPPKGFTAPPLRDSTLI----TPSHCDSVALPLGTVPQSLSPHEDLVASVP 265
Cdd:PRK07764  695 GAAPAQPAPAPAAT-PPAGQADDPAAQPPQAAQGASAPSPAADDPVplppEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773


                  .
gi 223633941  266 A 266
Cdd:PRK07764  774 P 774
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 88-228 1.85e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 1.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   88 PRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSShEPMEDAAPILSPLASPDPQAKHPQDLAS 167
Cdd:PRK07764  633 AAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP-APAPAAPAAPAGAAPAQPAPAPAATPPA 711

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 223633941  168 TPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPDPLACSPPPPKGFTAPP 228
Cdd:PRK07764  712 GQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAA 772
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
118-313 2.29e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.17  E-value: 2.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  118 SGPDPP--GEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLAstpsPGPMTTSVSSLSASQPPEPSLPLEH 195
Cdd:PRK12323  372 AGPATAaaAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAA----PARRSPAPEALAAARQASARGPGGA 447

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  196 PSPePPALFPHP-PHTPDPLACSPPPPKGFTAPPLRDSTLITPShcdsvalplgTVPQSLSPHEDLVASVPAISGL---G 271
Cdd:PRK12323  448 PAP-APAPAAAPaAAARPAAAGPRPVAAAAAAAPARAAPAAAPA----------PADDDPPPWEELPPEFASPAPAqpdA 516

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 223633941  272 GSNSHVSASSRWQETARTSCAFNSSVQQDPLSRHPPETCQME 313
Cdd:PRK12323  517 APAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATE 558
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 133-267 2.36e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.39  E-value: 2.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  133 GASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPmTTSVSSLSASQPPEPSLPLEHPSPEPPAlfPHPPHTPD 212
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAP-AAAASAPAAPPAAAPPAPVAAPAAAAPA--AAPAAAPA 443

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 223633941  213 PLACSPPPP----KGFTAPPLR--DSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVPAI 267
Cdd:PRK14951  444 AVALAPAPPaqaaPETVAIPVRvaPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQL 504
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 123-270 2.38e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.39  E-value: 2.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  123 PGEVGERAPDGASQSSHEPmEDAAPILSPLASPD-PQAKHPQDLASTPSPGPMTTSVSSLSASQPP-EPSLPLEHPSPEP 200
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARP-EAAAPAAAPVAQAAaAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAaAAPAAAPAAAPAA 444

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 223633941  201 PALFPHPPHtPDPLACSPPPPKGFTAPPLRDSTLITPSHCDSVALP--------LGTVPQslsphedLVASVpAISGL 270
Cdd:PRK14951  445 VALAPAPPA-QAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTpteegdvwHATVQQ-------LAAAE-AITAL 513
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 50-238 2.58e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 2.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   50 HCDDPPSPSPGKRKCPVGRRRRPRGRMKNHSLRAGRECPRGLEETSD--LLSQLQSLLGPHLDKGDFGQLSGPDP----- 122
Cdd:PHA03307  184 RAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADdaGASSSDSSSSESSGCGWGPENECPLPrpapi 263

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  123 --PGEVGERAPDGASQSSHEPMEDAAPILSPlaSPDPQAKHPQDLASTPSP------GPMTTSVSSLSASQPPEPSLPLE 194
Cdd:PHA03307  264 tlPTRIWEASGWNGPSSRPGPASSSSSPRER--SPSPSPSSPGSGPAPSSPrassssSSSRESSSSSTSSSSESSRGAAV 341

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 223633941  195 HPSPePPALFPHPPHTPDPLAcSPPPPKGFTAPPLRDSTLITPS 238
Cdd:PHA03307  342 SPGP-SPSRSPSPSRPPPPAD-PSSPRKRPRPSRAPSSPAASAG 383
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 78-231 3.08e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 3.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   78 NHSLRAGRECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQS-SHEPMEDAAPILSPLASPD 156
Cdd:PHA03307  760 NPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRkSRSHTPDGGSESSGPARPP 839

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  157 PQAKHPQDLASTPSPGPMTTSV----SSLSASQPPEPSLPLEHPSPEPPALFPHPPHTPDPLACSPPPPK--GFTAPPLR 230
Cdd:PHA03307  840 GAAARPPPARSSESSKSKPAAAggraRGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPrvKLGPMPPG 919


                  .
gi 223633941  231 D 231
Cdd:PHA03307  920 G 920
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 112-221 3.29e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 3.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  112 GDFGQLSGPDPPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGpmttsvSSLSASQPPEPSL 191
Cdd:PRK07764  674 GGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA------ADDPVPLPPEPDD 747

                          90       100       110
                  ....*....|....*....|....*....|
gi 223633941  192 PLEHPSPEPPALFPHPPHTPDPLACSPPPP 221
Cdd:PRK07764  748 PPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 122-233 5.82e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 5.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  122 PPGEVGERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPP 201
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 223633941  202 ALFPHPPHTPDP--------------LACSPPPPKGFTAPPLRDST 233
Cdd:PRK14951  446 ALAPAPPAQAAPetvaipvrvapepaVASAAPAPAAAPAAARLTPT 491
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 120-226 7.33e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 40.48  E-value: 7.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  120 PDPpgevgerAPDGASQSSHEPMEDAAPILSPLASPDP-QAKHPQdLASTPSPGPMTTSvsslSASQPPEPSL-PLEHPS 197
Cdd:PHA03269   40 PDP-------APAPHQAASRAPDPAVAPTSAASRKPDLaQAPTPA-ASEKFDPAPAPHQ----AASRAPDPAVaPQLAAA 107

                          90       100
                  ....*....|....*....|....*....
gi 223633941  198 PEPPalfPHPPHTPDPLACSPPPPKGFTA 226
Cdd:PHA03269  108 PKPD---AAEAFTSAAQAHEAPADAGTSA 133
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 120-209 8.77e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 40.48  E-value: 8.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941  120 PDP---PGEVGERAPDGA----SQSSHEPMEDAAPILSplASPDPQAKHPQDLASTPSPGPMTTSVSslSASQPPEPSLP 192
Cdd:PHA03269   68 PDLaqaPTPAASEKFDPApaphQAASRAPDPAVAPQLA--AAPKPDAAEAFTSAAQAHEAPADAGTS--AASKKPDPAAH 143

                          90
                  ....*....|....*..
gi 223633941  193 LEHpSPEPPALFPHPPH 209
Cdd:PHA03269  144 TQH-SPPPFAYTRSMEH 159
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 86-233 9.01e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.54  E-value: 9.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 223633941   86 ECPRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGevgERAPDGASQSSHEPMEDAAPILSPLASPDPQAKHPQDL 165
Cdd:PHA03307  254 ECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPR---ERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTS 330

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 223633941  166 ASTPSPGPMTTSVSSLSASQPPepslplehPSPEPPALFPHPPhtpdPLACSPPPPKGFTAPPLRDST 233
Cdd:PHA03307  331 SSSESSRGAAVSPGPSPSRSPS--------PSRPPPPADPSSP----RKRPRPSRAPSSPAASAGRPT 386
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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