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Conserved domains on  [gi|281427188|ref|NP_001163942|]
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zinc finger CCCH domain-containing protein 13 [Rattus norvegicus]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Homo sapiens proline-rich protein 3 (PRR3)

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
42-63 1.21e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 1.21e-05
                           10        20
                   ....*....|....*....|..
gi 281427188    42 CRNWLKTGSCLYGNTCRFIHGP 63
Cdd:pfam00642    6 CRFFLRTGYCKYGDRCKFAHGQ 27
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
42-63 1.21e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 1.21e-05
                           10        20
                   ....*....|....*....|..
gi 281427188    42 CRNWLKTGSCLYGNTCRFIHGP 63
Cdd:pfam00642    6 CRFFLRTGYCKYGDRCKFAHGQ 27
ZnF_C3H1 smart00356
zinc finger;
42-63 5.24e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.07  E-value: 5.24e-03
                            10        20
                    ....*....|....*....|..
gi 281427188     42 CRNWlKTGSCLYGNTCRFIHGP 63
Cdd:smart00356    7 CKFF-KRGYCPRGDRCKFAHPL 27
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
42-63 1.21e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 1.21e-05
                           10        20
                   ....*....|....*....|..
gi 281427188    42 CRNWLKTGSCLYGNTCRFIHGP 63
Cdd:pfam00642    6 CRFFLRTGYCKYGDRCKFAHGQ 27
zf_CCCH_4 pfam18345
Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch ...
 42-61 3.42e-04

Zinc finger domain; This is a zinc finger domain found in Zinc finger CCCH-type with G patch domain-containing proteins such as ZIP. Functional studies indicate that ZIP specifically targets EGFR and represses its transcription, and that the zinc finger and the coiled-coil domains are central to that process.


Pssm-ID: 465719 [Multi-domain]  Cd Length: 19  Bit Score: 39.32  E-value: 3.42e-04
                           10        20
                   ....*....|....*....|
gi 281427188    42 CRNWLKtGSCLYGNTCRFIH 61
Cdd:pfam18345    1 CKFFLK-GRCRYGDKCRFAH 19
ZnF_C3H1 smart00356
zinc finger;
42-63 5.24e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.07  E-value: 5.24e-03
                            10        20
                    ....*....|....*....|..
gi 281427188     42 CRNWlKTGSCLYGNTCRFIHGP 63
Cdd:smart00356    7 CKFF-KRGYCPRGDRCKFAHPL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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