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Conserved domains on  [gi|300796867|ref|NP_001180204|]
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uncharacterized protein LOC100360933 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NlpC super family cl43273
Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];
43-89 1.10e-04

Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG0791:

Pssm-ID: 440554 [Multi-domain]  Cd Length: 218  Bit Score: 41.22  E-value: 1.10e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 300796867  43 EPEPGDLFLFKLRSPKAQwcgaHVGVYCGHGEIIHfegrAP-SNSGVQ 89
Cdd:COG0791  160 ELQPGDLVFFRTGGGGIS----HVGIYLGNGKFIH----ASsSGKGVR 199
 
Name Accession Description Interval E-value
NlpC COG0791
Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];
43-89 1.10e-04

Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440554 [Multi-domain]  Cd Length: 218  Bit Score: 41.22  E-value: 1.10e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 300796867  43 EPEPGDLFLFKLRSPKAQwcgaHVGVYCGHGEIIHfegrAP-SNSGVQ 89
Cdd:COG0791  160 ELQPGDLVFFRTGGGGIS----HVGIYLGNGKFIH----ASsSGKGVR 199
NLPC_P60 pfam00877
NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.
 43-90 8.33e-03

NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.


Pssm-ID: 395705 [Multi-domain]  Cd Length: 105  Bit Score: 34.18  E-value: 8.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 300796867   43 EPEPGDLFLFKlrspkAQWCGAHVGVYCGHGEIIHfegrAPSNSGVQT 90
Cdd:pfam00877  50 EPQRGDLVFFG-----TGKGISHVGIYLGNGQMLH----ASTGGGVSI 88
 
Name Accession Description Interval E-value
NlpC COG0791
Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];
43-89 1.10e-04

Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440554 [Multi-domain]  Cd Length: 218  Bit Score: 41.22  E-value: 1.10e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 300796867  43 EPEPGDLFLFKLRSPKAQwcgaHVGVYCGHGEIIHfegrAP-SNSGVQ 89
Cdd:COG0791  160 ELQPGDLVFFRTGGGGIS----HVGIYLGNGKFIH----ASsSGKGVR 199
NLPC_P60 pfam00877
NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.
 43-90 8.33e-03

NlpC/P60 family; The function of this domain is unknown. It is found in several lipoproteins.


Pssm-ID: 395705 [Multi-domain]  Cd Length: 105  Bit Score: 34.18  E-value: 8.33e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 300796867   43 EPEPGDLFLFKlrspkAQWCGAHVGVYCGHGEIIHfegrAPSNSGVQT 90
Cdd:pfam00877  50 EPQRGDLVFFG-----TGKGISHVGIYLGNGQMLH----ASTGGGVSI 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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