|
Name |
Accession |
Description |
Interval |
E-value |
| MAP70 |
pfam07058 |
Microtubule-associated protein 70; This family represents a family of plant ... |
47-568 |
0e+00 |
|
Microtubule-associated protein 70; This family represents a family of plant microtubule-associated proteins of size 70 kDa. The proteins contain four predicted coiled-coil domains, and truncation studies identify a central domain that targets the proteins to microtubules. It has no predicted trans-membrane domains, and the region between the coils from approximately residues 240-483 is the targetting region.
Pssm-ID: 399798 [Multi-domain] Cd Length: 544 Bit Score: 663.82 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 47 GSDPVRIELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKK 126
Cdd:pfam07058 1 GSDPVKVELNRLENEVRDKDRELGEALAEIKALRLSERLKEKAVEELTDELLKLDEKLKASENLLESKNLEIKKINDEKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 127 ASMAAQFAAEASLRRVHAAQKDDDMPPIEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSALAK 206
Cdd:pfam07058 81 AALAAQFAAEATLRRVHAAQKDEDMPPIEAILAPLEAELKLARQEINKLQDDNKALDRLTKSKEAALLEAERAVQIALAK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 207 ASMVDDLQNKNQELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKIL 286
Cdd:pfam07058 161 ASLVDDLQNKNQELMKQIEICQEENKILDKAHRQKVAEVEKLSQTVRELEEAVLAGGAAANAVRDYQRKVKEMNEERRTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 287 ERELARAKVNANRVATVVANEWKDSNDK---------------GEMQQLRDKLAIADRAAKSEAQLKEKFLLRLRVLEES 351
Cdd:pfam07058 241 ERELARAKVVANRVATVVANEWKDANDKvmpvkqwleerrflqGEMQQLRDKLAISERTAKAEAQLKEKVQLRLKVLEEG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 352 LKGPTSSSSRGTSVGRSSSNGPTRRQSLGGAETSPKITSNGSLIKRTPSSQLRS-LTASASTVLKHAKGTSRSFDGGTRS 430
Cdd:pfam07058 321 LRSSLSGSGRSFSEGRSRSNGPSRRQSLGGASNNGLLSSNGFSSRRRSSSSSSSsLSSSHAKGLKHAKGGSKSFDGGSKS 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 431 LDRSKVLINGPRSNFPLNhKSSEGTSRGESPSSIKGEEESAD----KATNNDSVPGVLYDLLQKEVITLRKAAHEKDQSL 506
Cdd:pfam07058 401 LGRGKHLLNGSTENSDAV-RDCDTNDSWKGNADEGTIENTNSntdeSNDETDNVSGQLYDMLQKEVIHLRKASHEKDQSL 479
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334182581 507 RDKDEAIEMLAKKVETLTKAMDVEAKKMRREVAVMGKEVAAMRVvdKGQQDSKTRRLSVSKG 568
Cdd:pfam07058 480 KDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKEVAAMRV--DKEHLGRSKRTGSSKG 539
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
54-339 |
1.09e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 54 ELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMAAQF 133
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 134 AAEASLRRVHAAQKDddmppIEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSALAKAsmvDDL 213
Cdd:COG1196 313 ELEERLEELEEELAE-----LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL---EEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 214 QNKNQELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKILERELARA 293
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 334182581 294 KVNANRVAtvvanewkdsndKGEMQQLRDKLAIADRAAKSEAQLKE 339
Cdd:COG1196 465 LAELLEEA------------ALLEAALAELLEELAEAAARLLLLLE 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
65-352 |
1.86e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 65 KDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMAAQFAAEASLRRVHA 144
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 145 AQKD--DDMPPIEAILAPLEAELKLSRQEIAKLQDD-NKSLDRLTKSKEAalLDAERTVQSALAKAsmVDDLQNKNQELM 221
Cdd:TIGR02168 755 ELTEleAEIEELEERLEEAEEELAEAEAEIEELEAQiEQLKEELKALREA--LDELRAELTLLNEE--AANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 222 KQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEavlaggaaanAVRDYQRKFQEMNEERKILERELARAKVNANRVA 301
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE----------LIEELESELEALLNERASLEEALALLRSELEELS 900
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 334182581 302 TVVAnewkdsNDKGEMQQLRDKLaIADRAAKSEAQLK-EKFLLRLRVLEESL 352
Cdd:TIGR02168 901 EELR------ELESKRSELRREL-EELREKLAQLELRlEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
58-353 |
2.17e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 2.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 58 LENEVRDKDRELSegQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMAAQFAAEA 137
Cdd:COG1196 218 LKEELKELEAELL--LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 138 SLRRvhaaqkdddmppIEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSALAKASMVddLQNKN 217
Cdd:COG1196 296 ELAR------------LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA--EAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 218 QELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKILERELARAKVNA 297
Cdd:COG1196 362 EAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 334182581 298 NRVATVVANEWKDSNDKGEMQQLRDKLAIADRAAKSEAQLKEKFLLRLRVLEESLK 353
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
52-295 |
2.27e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 2.27e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 52 RIELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMAA 131
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 132 QFAAEASLRRVHAAQKDDdmppIEAILAPLEAELKLSRQEI---AKLQDDNKSLDRLTKSKEAALLDAERTVQSALAKAS 208
Cdd:COG1196 360 LAEAEEALLEAEAELAEA----EEELEELAEELLEALRAAAelaAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 209 MVDDLQNKNQELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKILER 288
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
....*..
gi 334182581 289 ELARAKV 295
Cdd:COG1196 516 LAGLRGL 522
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
49-294 |
6.07e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 6.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 49 DPVRIELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEElgkmaekLKLIENLLESKNLEIKKINEEKKAS 128
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE-------LYALANEISRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 129 MAAQFAAEASLRRvHAAQKDDDmppiEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSAlakAS 208
Cdd:TIGR02168 315 ERQLEELEAQLEE-LESKLDEL----AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL---RS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 209 MVDDLQNKNQELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEAVLAGGAAA--NAVRDYQRKFQEMNEERKIL 286
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEEleEELEELQEELERLEEALEEL 466
|
....*...
gi 334182581 287 ERELARAK 294
Cdd:TIGR02168 467 REELEEAE 474
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
20-302 |
1.07e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 20 GGSKGMSRRRSMRPSFDADNEFMNllHGSDPVRIELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGK 99
Cdd:TIGR02169 657 GGSRAPRGGILFSRSEPAELQRLR--ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 100 MAEKLKLIENLLESKNLEIkkinEEKKASMAAQFAAEASLRRVHAAqkdddmppIEAILAPLEAelKLSRQEIAKLQDDN 179
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEI----ENVKSELKELEARIEELEEDLHK--------LEEALNDLEA--RLSHSRIPEIQAEL 800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 180 KSLDRLTKSKEAALLDAERTVQSALAKASMVDD----LQNKNQELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVREL 255
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKeiqeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 334182581 256 EEAVlagGAAANAVRDYQRKFQEMNEERKILERELARAKVNANRVAT 302
Cdd:TIGR02169 881 ESRL---GDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKA 924
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
51-320 |
1.11e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 51 VRIELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMA 130
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 131 AQFAAEASLRRVHAAQKDddmppIEAILAPLEAELKLSRQEIAKLQDdnkSLDRLTKSKEAALLDAERtvqsalakaSMV 210
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQ-----LELQIASLNNEIERLEARLERLED---RRERLQQEIEELLKKLEE---------AEL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 211 DDLQNKNQELMKQIEICQEEnriidkmHRQKVAEVEKLMQSVRELEEavlaggaaanAVRDYQRKFQEMNEERKILEREL 290
Cdd:TIGR02168 436 KELQAELEELEEELEELQEE-------LERLEEALEELREELEEAEQ----------ALDAAERELAQLQARLDSLERLQ 498
|
250 260 270
....*....|....*....|....*....|
gi 334182581 291 ARAKVNANRVATVVANEWKDSNDKGEMQQL 320
Cdd:TIGR02168 499 ENLEGFSEGVKALLKNQSGLSGILGVLSEL 528
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
60-267 |
2.75e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 2.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 60 NEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMAAQFAAEASL 139
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 140 --------RRVHAAQKDDDMPPIEAILAP------------LEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERT 199
Cdd:COG4942 100 eaqkeelaELLRALYRLGRQPPLALLLSPedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334182581 200 VQSALAKASMVDDLQNKNQELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEAVLAGGAAAN 267
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
54-299 |
1.93e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 54 ELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMAAQF 133
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 134 AAEASL-RRVHAAQKDDDMPPIEAILAPLEAELKLSRQEIAK--LQDDNKSLDRLTKSKEAalLDAERtvqsalakasmv 210
Cdd:COG4942 101 AQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKylAPARREQAEELRADLAE--LAALR------------ 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 211 DDLQNKNQELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEAVLAGGAAAnavRDYQRKFQEMNEERKILEREL 290
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEA---EELEALIARLEAEAAAAAERT 243
|
....*....
gi 334182581 291 ARAKVNANR 299
Cdd:COG4942 244 PAAGFAALK 252
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
54-353 |
1.38e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 54 ELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMAAQF 133
Cdd:PRK03918 211 EISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 134 AAEASLRRVHAAQK-DDDMPPIEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSAL----AKAS 208
Cdd:PRK03918 291 KAEEYIKLSEFYEEyLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElyeeAKAK 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 209 M--------------VDDLQNKNQELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEA---------VLAGGAA 265
Cdd:PRK03918 371 KeelerlkkrltgltPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgrELTEEHR 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 266 ANAVRDYQRKFQEMNEERKILERELARAKVNANRVATVVANEWKDSNDKGEMQQLRD--------KLAIADRAAKSEAQL 337
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEleeklkkyNLEELEKKAEEYEKL 530
|
330
....*....|....*....
gi 334182581 338 KEKFLL---RLRVLEESLK 353
Cdd:PRK03918 531 KEKLIKlkgEIKSLKKELE 549
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
54-353 |
3.50e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 54 ELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMAAQF 133
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 134 AAEASLRRVHAAQKDDDMPPIEAilAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAAlLDAERTVQSALAKASMVDDL 213
Cdd:PTZ00121 1426 KAEEKKKADEAKKKAEEAKKADE--AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA-KKADEAKKKAEEAKKKADEA 1502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 214 QNKNQELMKQIEICQ-EENRIID---KMHRQKVAEVEKLMQSVRELEEAVLAGGA-AANAVRDYQRKFQEMNEERKILER 288
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKaEEAKKADeakKAEEAKKADEAKKAEEKKKADELKKAEELkKAEEKKKAEEAKKAEEDKNMALRK 1582
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334182581 289 ELARAKVNANRVATVVANEWKDSNDKGEMQQLRDKLAIADRAAKSEAQLKEKFLLRLRVLEESLK 353
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
38-294 |
3.72e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 3.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 38 DNEFMNLLHGSDPVRIELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAE--------------- 102
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlrvkekigelea 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 103 KLKLIENLLESKNLEIKKINEEKKASMA----AQFAAEASLRRVHAAQKDDDmpPIEAILAPLEAELKLSRQEIAKLQDD 178
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAKLEAeidkLLAEIEELEREIEEERKRRD--KLTEEYAELKEELEDLRAELEEVDKE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 179 NKSLDRLTKSKEAALLDAERTVQSALAKasmvddlQNKNQELMKQIEICQEENRIIDKMHRQKVAEVE--------KLMQ 250
Cdd:TIGR02169 380 FAETRDELKDYREKLEKLKREINELKRE-------LDRLQEELQRLSEELADLNAAIAGIEAKINELEeekedkalEIKK 452
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 334182581 251 SVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKILERELARAK 294
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
49-352 |
6.00e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 49 DPVRIELNRLENEVRDK-----------DRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLE 117
Cdd:TIGR02169 194 DEKRQQLERLRREREKAeryqallkekrEYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 118 IKKINEEkkasmaaqfaaeaslrrvhaaqkdddmppieaILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAE 197
Cdd:TIGR02169 274 LEELNKK--------------------------------IKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 198 RTVQSALAKasmVDDLQNKNQELMKQIEicqEENRIIDKMHRQKVAEVEKLMQSVRELEEAVLAGGAAANAVRDYQRKFQ 277
Cdd:TIGR02169 322 ERLAKLEAE---IDKLLAEIEELEREIE---EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 278 EMNEERKILERELARAKVNANRVATVVA---NEWKDSNDK-----GEMQQLRDKLAIADRAAKSEAQLKEKFLLRLRVLE 349
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELAdlnAAIAGIEAKineleEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
...
gi 334182581 350 ESL 352
Cdd:TIGR02169 476 EEY 478
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
85-338 |
8.48e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 85 QREKAVE-ELTEELGKMAEklklienllESKNLEIKKINEEKKASMAAQFAAEAslRRVHAAQKDDDMPPIEAILAPLEA 163
Cdd:PTZ00121 1083 AKEDNRAdEATEEAFGKAE---------EAKKTETGKAEEARKAEEAKKKAEDA--RKAEEARKAEDARKAEEARKAEDA 1151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 164 ElklsRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSaLAKASMVddlqnKNQELMKQIEICQ--EENRIIDKMHRqk 241
Cdd:PTZ00121 1152 K----RVEIARKAEDARKAEEARKAEDAKKAEAARKAEE-VRKAEEL-----RKAEDARKAEAARkaEEERKAEEARK-- 1219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 242 vAEVEKLMQSVRELEEAVLAGGAAanavrdyqRKFQEMNEERKILERELARAKVNANRVATVVANEWKDSNDKGEMQQLR 321
Cdd:PTZ00121 1220 -AEDAKKAEAVKKAEEAKKDAEEA--------KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKK 1290
|
250
....*....|....*..
gi 334182581 322 DklaiADRAAKSEAQLK 338
Cdd:PTZ00121 1291 K----ADEAKKAEEKKK 1303
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
58-306 |
1.02e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 58 LENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLK----LIENLLESKNLEIKKINE---------E 124
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEaakcLKEDMLEDSNTQIEQLRKmmlshegvlQ 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 125 KKASMAAQFAaEASLRRVHAAQKDDDMP------PIEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALL---- 194
Cdd:pfam15921 188 EIRSILVDFE-EASGKKIYEHDSMSTMHfrslgsAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLqqhq 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 195 --------DAERTVQSALAKASMVDDLQNKNQElmkQIEICQEENRIIDKMHRQKVAEVEKLMQSVR-ELEEavlaggaa 265
Cdd:pfam15921 267 drieqlisEHEVEITGLTEKASSARSQANSIQS---QLEIIQEQARNQNSMYMRQLSDLESTVSQLRsELRE-------- 335
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 334182581 266 anAVRDYQRKFQEMNEERKILERELARAKVNANRVATVVAN 306
Cdd:pfam15921 336 --AKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGN 374
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
54-257 |
1.21e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 54 ELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMAAQF 133
Cdd:TIGR04523 233 NIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKEL 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 134 AAEASLRRVHAAQKDDDMPPIEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSALAK------- 206
Cdd:TIGR04523 313 KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesq 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 334182581 207 ----ASMVDDLQNKNQELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEE 257
Cdd:TIGR04523 393 indlESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTN 447
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
61-533 |
1.26e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 61 EVRDKDRELSEGQAEIKALRLSERQREKAVEELTeelgKMAEKLKLIENLLESKNLEIKKINEEKKASMAAQFAAEASLR 140
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKKKADEAK----KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 141 RVHAAQKDDDMPPIEAILAPLE-AELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSALAKASmVDDLQNKNQE 219
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKkEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK-ADEAKKKAEE 1429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 220 LMKQIEICQ--EENRIIDKMhRQKVAEVEKLMQSVRELEEAVLAGGAAANAvrDYQRKFQEMN---EERKILERELARAK 294
Cdd:PTZ00121 1430 KKKADEAKKkaEEAKKADEA-KKKAEEAKKAEEAKKKAEEAKKADEAKKKA--EEAKKADEAKkkaEEAKKKADEAKKAA 1506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 295 VNANRvatvvANEWKDSNDKGEMQQLR--DKLAIADRAAKSEAQLKEKfllRLRVLEESLKGPTSSSSRGTSVGRSSSNG 372
Cdd:PTZ00121 1507 EAKKK-----ADEAKKAEEAKKADEAKkaEEAKKADEAKKAEEKKKAD---ELKKAEELKKAEEKKKAEEAKKAEEDKNM 1578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 373 PTRRqslggAETSPKITSNGSLIKRTPSSQLRSLTASASTVLKHAKGTSRSFdggtRSLDRSKVLINGPRSNFPLNHKSS 452
Cdd:PTZ00121 1579 ALRK-----AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL----KKAEEEKKKVEQLKKKEAEEKKKA 1649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 453 EGTSRGESPSSIKGEEEsADKATNNdsvpgvlydllQKEVITLRKAAHEKdqslRDKDEAI---EMLAKKVETLTKAMDV 529
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEE-AKKAEED-----------KKKAEEAKKAEEDE----KKAAEALkkeAEEAKKAEELKKKEAE 1713
|
....
gi 334182581 530 EAKK 533
Cdd:PTZ00121 1714 EKKK 1717
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-313 |
2.13e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 64 DKDRELSEGQAEIkaLRLSERQREKAVEELTEELGKM-AEKLKLIENLlESKNLEIKKINEEKKASMAAQFAAEASLRRV 142
Cdd:PTZ00121 1573 EEDKNMALRKAEE--AKKAEEARIEEVMKLYEEEKKMkAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 143 HAAQKDDDMPPIEAI-LAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAE---RTVQSALAKASMVDDLQNKNQ 218
Cdd:PTZ00121 1650 EELKKAEEENKIKAAeEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEelkKKEAEEKKKAEELKKAEEENK 1729
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 219 ELMKQIEICQEENRIIDKMHRQKVAEVEKLMQSVRELEEAVLAGGAAANAVRDYQRKfQEMNEERKILERELARAKVN-- 296
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD-EEDEKRRMEVDKKIKDIFDNfa 1808
|
250 260
....*....|....*....|.
gi 334182581 297 ----ANRVATVVANEWKDSND 313
Cdd:PTZ00121 1809 niieGGKEGNLVINDSKEMED 1829
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
54-423 |
3.03e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 54 ELNRLENEvrdkDRELSEGQAEIKALRLSERQREKAVEELTEELGKM---------------AEKLKLiENLLESKNLEI 118
Cdd:pfam15921 532 ELQHLKNE----GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtagamqVEKAQL-EKEINDRRLEL 606
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 119 K--KINEEKKASMAAQFAAEAS---LRRVH----AAQKDDDMPPIEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSK 189
Cdd:pfam15921 607 QefKILKDKKDAKIRELEARVSdleLEKVKlvnaGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNK 686
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 190 EAALLDAERTVQSALAKASmvDDLQNKNQELMKQIEICQEENRIIDKMHRQ---KVAEVEKLMQSVRELEEAVlaggAAA 266
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQ--SELEQTRNTLKSMEGSDGHAMKVAMGMQKQitaKRGQIDALQSKIQFLEEAM----TNA 760
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 267 NAVRDYqrkfqeMNEERKILERELARAKVNANRVA----TVVANEWKDSNDKGEMQQLRDKLAIADRAAKSEAQLKEKFL 342
Cdd:pfam15921 761 NKEKHF------LKEEKNKLSQELSTVATEKNKMAgeleVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQES 834
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 343 LRLRVLE----ESLKGP--TSSSS------RGTSVGRSSSNGPTRRQSlggAETSPKITSNGSLIKRTPSSQLRSLTASA 410
Cdd:pfam15921 835 VRLKLQHtldvKELQGPgyTSNSSmkprllQPASFTRTHSNVPSSQST---ASFLSHHSRKTNALKEDPTRDLKQLLQEL 911
|
410
....*....|...
gi 334182581 411 STVLKHAKGTSRS 423
Cdd:pfam15921 912 RSVINEEPTVQLS 924
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
155-327 |
3.05e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 155 EAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSALAKASMvDDLQNKNQELMKQIEicQEENRII 234
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAEL-AELPERLEELEERLE--ELRELEE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 235 DKmhRQKVAEVEKLMQSVRELEEAVLAggAAANAVRDYQRKFQEMNEERKILERELARAKVNANRVATVVANEWKDSNDK 314
Cdd:COG4717 164 EL--EELEAELAELQEELEELLEQLSL--ATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170
....*....|...
gi 334182581 315 GEMQQLRDKLAIA 327
Cdd:COG4717 240 ALEERLKEARLLL 252
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
51-257 |
5.72e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 51 VRIELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASMA 130
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 131 AQFAAEASLRRvhaaqKDDDMPPIEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTkSKEAALLDAERTVQSALAKASmV 210
Cdd:TIGR02168 902 ELRELESKRSE-----LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT-LEEAEALENKIEDDEEEARRR-L 974
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 334182581 211 DDLQNKNQEL----MKQIEICQEENRIIDKMHRQK---VAEVEKLMQSVRELEE 257
Cdd:TIGR02168 975 KRLENKIKELgpvnLAAIEEYEELKERYDFLTAQKedlTEAKETLEEAIEEIDR 1028
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
54-207 |
5.87e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 5.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 54 ELNRLENEVRDKDRELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLK-------LIENLLESKNLE--------I 118
Cdd:COG3883 45 ELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYrsggsvsYLDVLLGSESFSdfldrlsaL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 119 KKINEEKKASMAAQFAAEASLRRVHAAQKDDdmppiEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAER 198
Cdd:COG3883 125 SKIADADADLLEELKADKAELEAKKAELEAK-----LAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLA 199
|
....*....
gi 334182581 199 TVQSALAKA 207
Cdd:COG3883 200 ELEAELAAA 208
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
90-334 |
8.44e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.14 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 90 VEELTEELGKMAEKLKLIENLLESKNLEIKKINEEKKASmaaqfaAEASLRRVhaaqkDDDMPPIEAILAPLEAELKLSR 169
Cdd:PRK05771 45 LRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKS------LEELIKDV-----EEELEKIEKEIKELEEEISELE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 170 QEIAKLQDDNKSLDRLTK-SKEAALLDAERTVQSALAKASmvddlQNKNQELMKQIEICQEENRIIDKM--------HRQ 240
Cdd:PRK05771 114 NEIKELEQEIERLEPWGNfDLDLSLLLGFKYVSVFVGTVP-----EDKLEELKLESDVENVEYISTDKGyvyvvvvvLKE 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 241 KVAEVEKLMQSVRELEEAVLAGGAAANAVRDYQRKFQEMNEERKILERELARakvnanrvatvVANEWKD--SNDKGEMQ 318
Cdd:PRK05771 189 LSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKE-----------LAKKYLEelLALYEYLE 257
|
250
....*....|....*.
gi 334182581 319 QLRDKLAIADRAAKSE 334
Cdd:PRK05771 258 IELERAEALSKFLKTD 273
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
54-361 |
9.58e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 38.97 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 54 ELNRLENEVRDKD---RELSEGQAEIKALRLSERQREKAVEELTEELGKMAEKLKLIEnllESKNLEIKKINEEKKASMA 130
Cdd:PTZ00121 1306 EAKKKAEEAKKADeakKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE---EKAEAAEKKKEEAKKKADA 1382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 131 AQFAAEaSLRRVHAAQKDDDMPPIEAILAPLEAELKLSRQEIAKLQDDNKSLDRLTKSKEAALLDAERTVQSALAKASmv 210
Cdd:PTZ00121 1383 AKKKAE-EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA-- 1459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334182581 211 DDLQNKNQELMKQIEICQ--EENRIIDKMhRQKVAEVEKLMQSVRELEEAVLAGGAAANAvrDYQRKFQEM---NEERKI 285
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKkaEEAKKADEA-KKKAEEAKKKADEAKKAAEAKKKADEAKKA--EEAKKADEAkkaEEAKKA 1536
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334182581 286 LERELARAKVNANRVATvvANEWKDSNDKGEMQQLR---DKLAIADRAAKSEAQLKEKFLLRLRVLEESLKGPTSSSSR 361
Cdd:PTZ00121 1537 DEAKKAEEKKKADELKK--AEELKKAEEKKKAEEAKkaeEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK 1613
|
|
| |
