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Conserved domains on  [gi|334183179|ref|NP_001185180|]
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elongator protein 2 [Arabidopsis thaliana]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 13234759)

WD40 repeat domain-containing protein folds into a beta-propeller structure and functions as a scaffold, providing a platform for the interaction and assembly of several proteins into a signalosome; similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
Gene Ontology:  GO:0005515
SCOP:  4002744

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
WD40 super family cl29593
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
54-443 3.16e-35

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


The actual alignment was detected with superfamily member cd00200:

Pssm-ID: 475233 [Multi-domain]  Cd Length: 289  Bit Score: 135.54  E-value: 3.16e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  54 TLPGHKASVNCTHWLPtskfafkakklDRQYLLSGDSDGIIILWELSTlnndqqwRHVLQLPLSHKKGVTCITAYMVSET 133
Cdd:cd00200    4 TLKGHTGGVTCVAFSP-----------DGKLLATGSGDGTIKVWDLET-------GELLRTLKGHTGPVRDVAASADGTY 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 134 damFASASSDGVVNVWDVSfpsqpseecKVVCLDSICVDTKAIVTLSLaelpqNPGRFALALGGLDNKIKLYSGErTGKF 213
Cdd:cd00200   66 ---LASGSSDKTIRLWDLE---------TGECVRTLTGHTSYVSSVAF-----SPDGRILSSSSRDKTIKVWDVE-TGKC 127
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 214 TSVceLKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIWklvlvgDVGSWRREITLAsyiegpvfvsgtftyq 293
Cdd:cd00200  128 LTT--LRGHTDWVNSVAFS---------PDGTFVASSSQDGTIKLW------DLRTGKCVATLT---------------- 174
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 294 isvesvliGHEDWVYSVEWQPpvidfiDGRlvnhqplSILSASMDKTMMIWRPEKKTgvwvnvvCVGELSHCALGFYGGH 373
Cdd:cd00200  175 --------GHTGEVNSVAFSP------DGE-------KLLSSSSDGTIKLWDLSTGK-------CLGTLRGHENGVNSVA 226
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 374 WSPNSLSILAHGYGGAFHLWRnvssskeSENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFS 443
Cdd:cd00200  227 FSPDGYLLASGSEDGTIRVWD-------LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
299-750 6.01e-22

WD40 repeat [General function prediction only];


:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 99.22  E-value: 6.01e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 299 VLIGHEDWVYSVEWQPpvidfiDGRLvnhqplsILSASMDKTMMIWRPEKKTGVWVNVVCVGELSHCAlgfygghWSPNS 378
Cdd:COG2319   73 TLLGHTAAVLSVAFSP------DGRL-------LASASADGTVRLWDLATGLLLRTLTGHTGAVRSVA-------FSPDG 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 379 LSILAHGYGGAFHLWrnvssskESENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVfsaWKNDEGNEaedehw 458
Cdd:COG2319  133 KTLASGSADGTVRLW-------DLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRL---WDLATGKL------ 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 459 heLARPQVHGHDINCVAMvqGKGNHRFVSGAEEKVVRVFEAPlsflktlnhtcaggegsfpedlqadvqvlganmsalgl 538
Cdd:COG2319  197 --LRTLTGHTGAVRSVAF--SPDGKLLASGSADGTVRLWDLA-------------------------------------- 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 539 sqkpiylhssseplerngGGEGLDTFEtvpeaapaelkeppiedqlafhtlwpeshklyGHGNELFSLCSDHKGNLVASS 618
Cdd:COG2319  235 ------------------TGKLLRTLT--------------------------------GHSGSVRSVAFSPDGRLLASG 264
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 619 CKAQSasmaeIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQrtdngevSHKLMAKVEAHKRI 698
Cdd:COG2319  265 SADGT-----VRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLA-------TGKLLRTLTGHTGA 332
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|..
gi 334183179 699 IWACSWNPFGHQFATSSRDKTVKIWSVENDariKQILVLPPFGSSVTAVAWT 750
Cdd:COG2319  333 VRSVAFSPDGKTLASGSDDGTVRLWDLATG---ELLRTLTGHTGAVTSVAFS 381
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
54-443 3.16e-35

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 135.54  E-value: 3.16e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  54 TLPGHKASVNCTHWLPtskfafkakklDRQYLLSGDSDGIIILWELSTlnndqqwRHVLQLPLSHKKGVTCITAYMVSET 133
Cdd:cd00200    4 TLKGHTGGVTCVAFSP-----------DGKLLATGSGDGTIKVWDLET-------GELLRTLKGHTGPVRDVAASADGTY 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 134 damFASASSDGVVNVWDVSfpsqpseecKVVCLDSICVDTKAIVTLSLaelpqNPGRFALALGGLDNKIKLYSGErTGKF 213
Cdd:cd00200   66 ---LASGSSDKTIRLWDLE---------TGECVRTLTGHTSYVSSVAF-----SPDGRILSSSSRDKTIKVWDVE-TGKC 127
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 214 TSVceLKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIWklvlvgDVGSWRREITLAsyiegpvfvsgtftyq 293
Cdd:cd00200  128 LTT--LRGHTDWVNSVAFS---------PDGTFVASSSQDGTIKLW------DLRTGKCVATLT---------------- 174
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 294 isvesvliGHEDWVYSVEWQPpvidfiDGRlvnhqplSILSASMDKTMMIWRPEKKTgvwvnvvCVGELSHCALGFYGGH 373
Cdd:cd00200  175 --------GHTGEVNSVAFSP------DGE-------KLLSSSSDGTIKLWDLSTGK-------CLGTLRGHENGVNSVA 226
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 374 WSPNSLSILAHGYGGAFHLWRnvssskeSENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFS 443
Cdd:cd00200  227 FSPDGYLLASGSEDGTIRVWD-------LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
25-444 3.26e-33

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 132.73  E-value: 3.26e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  25 VSWGASGLVSFGAQNAVAVFCPKTAQILTTLPGHKASVNCTHWLPtskfafkakklDRQYLLSGDSDGIIILWELSTlnn 104
Cdd:COG2319   86 FSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSP-----------DGKTLASGSADGTVRLWDLAT--- 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 105 dQQWRHVLQlplSHKKGVTCITaymVSETDAMFASASSDGVVNVWDVSFPSqpseeckvvCLDSICVDTKAIVTLSLAel 184
Cdd:COG2319  152 -GKLLRTLT---GHSGAVTSVA---FSPDGKLLASGSDDGTVRLWDLATGK---------LLRTLTGHTGAVRSVAFS-- 213
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 185 PQnpGRFaLALGGLDNKIKLYSGErTGKFtsVCELKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIWklvlv 264
Cdd:COG2319  214 PD--GKL-LASGSADGTVRLWDLA-TGKL--LRTLTGHSGSVRSVAFS---------PDGRLLASGSADGTVRLW----- 273
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 265 gDVGSWRREITLAsyiegpvfvsgtftyqisvesvliGHEDWVYSVEWQPpvidfiDGRLvnhqplsILSASMDKTMMIW 344
Cdd:COG2319  274 -DLATGELLRTLT------------------------GHSGGVNSVAFSP------DGKL-------LASGSDDGTVRLW 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 345 RPEkkTGVWVNVVCVGELSHCALGFygghwSPNSLSILAHGYGGAFHLWrNVSSSKESENWQmqkvpsGHFAAVTDVTWA 424
Cdd:COG2319  316 DLA--TGKLLRTLTGHTGAVRSVAF-----SPDGKTLASGSDDGTVRLW-DLATGELLRTLT------GHTGAVTSVAFS 381
                        410       420
                 ....*....|....*....|
gi 334183179 425 RTGEYLLSVSQDQTTRVFSA 444
Cdd:COG2319  382 PDGRTLASGSADGTVRLWDL 401
WD40 COG2319
WD40 repeat [General function prediction only];
299-750 6.01e-22

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 99.22  E-value: 6.01e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 299 VLIGHEDWVYSVEWQPpvidfiDGRLvnhqplsILSASMDKTMMIWRPEKKTGVWVNVVCVGELSHCAlgfygghWSPNS 378
Cdd:COG2319   73 TLLGHTAAVLSVAFSP------DGRL-------LASASADGTVRLWDLATGLLLRTLTGHTGAVRSVA-------FSPDG 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 379 LSILAHGYGGAFHLWrnvssskESENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVfsaWKNDEGNEaedehw 458
Cdd:COG2319  133 KTLASGSADGTVRLW-------DLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRL---WDLATGKL------ 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 459 heLARPQVHGHDINCVAMvqGKGNHRFVSGAEEKVVRVFEAPlsflktlnhtcaggegsfpedlqadvqvlganmsalgl 538
Cdd:COG2319  197 --LRTLTGHTGAVRSVAF--SPDGKLLASGSADGTVRLWDLA-------------------------------------- 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 539 sqkpiylhssseplerngGGEGLDTFEtvpeaapaelkeppiedqlafhtlwpeshklyGHGNELFSLCSDHKGNLVASS 618
Cdd:COG2319  235 ------------------TGKLLRTLT--------------------------------GHSGSVRSVAFSPDGRLLASG 264
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 619 CKAQSasmaeIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQrtdngevSHKLMAKVEAHKRI 698
Cdd:COG2319  265 SADGT-----VRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLA-------TGKLLRTLTGHTGA 332
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|..
gi 334183179 699 IWACSWNPFGHQFATSSRDKTVKIWSVENDariKQILVLPPFGSSVTAVAWT 750
Cdd:COG2319  333 VRSVAFSPDGKTLASGSDDGTVRLWDLATG---ELLRTLTGHTGAVTSVAFS 381
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
299-724 1.41e-19

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 90.09  E-value: 1.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 299 VLIGHEDWVYSVEWQPpvidfiDGRLvnhqplsILSASMDKTMMIWRPEKKTGVWVNVVCVGELSHCAlgfygghWSPNS 378
Cdd:cd00200    4 TLKGHTGGVTCVAFSP------DGKL-------LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA-------ASADG 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 379 LSILAHGYGGAFHLWrNVSSSKESENWQmqkvpsGHFAAVTDVTWARTGEYLLSVSQDQTTRVfsaWKNDEGNEaedehw 458
Cdd:cd00200   64 TYLASGSSDKTIRLW-DLETGECVRTLT------GHTSYVSSVAFSPDGRILSSSSRDKTIKV---WDVETGKC------ 127
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 459 heLARPQVHGHDINCVAMvqgKGNHRFVSGA-EEKVVRVFEaplsflktlnhtcaggegsfpedlqadvqvlganmsalg 537
Cdd:cd00200  128 --LTTLRGHTDWVNSVAF---SPDGTFVASSsQDGTIKLWD--------------------------------------- 163
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 538 lsqkpiylhssseplerngggegLDTFETVpeaapaelkeppiedqlafhtlwpesHKLYGHGNELFSLCSDHKGNLVAS 617
Cdd:cd00200  164 -----------------------LRTGKCV--------------------------ATLTGHTGEVNSVAFSPDGEKLLS 194
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 618 SckaqsASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFsiqRTDNGEVSHKLmakvEAHKR 697
Cdd:cd00200  195 S-----SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW---DLRTGECVQTL----SGHTN 262
                        410       420
                 ....*....|....*....|....*..
gi 334183179 698 IIWACSWNPFGHQFATSSRDKTVKIWS 724
Cdd:cd00200  263 SVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
685-724 1.15e-06

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 45.77  E-value: 1.15e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 334183179   685 SHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWS 724
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
87-355 4.39e-06

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 50.47  E-value: 4.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  87 SGDSDGIIILWELStlnndqqwRHVLQLPL-SHKKGVTCITaymVSETD-AMFASASSDGVVNVWDVSfpsqpseecKVV 164
Cdd:PLN00181 550 SSNFEGVVQVWDVA--------RSQLVTEMkEHEKRVWSID---YSSADpTLLASGSDDGSVKLWSIN---------QGV 609
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 165 CLDSIcvDTKAivTLSLAELPQNPGRfALALGGLDNKIKLYSgERTGKFtSVCELKGHTDWIRSLDFSlplhtteeipNS 244
Cdd:PLN00181 610 SIGTI--KTKA--NICCVQFPSESGR-SLAFGSADHKVYYYD-LRNPKL-PLCTMIGHSKTVSYVRFV----------DS 672
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 245 IMLVSSSQDKVIRIWKLVLvgdVGSWRREITLASYIeGPVFVSGTFTYQISVESVLIGHED---WVYSVEWQPPVIDFID 321
Cdd:PLN00181 673 STLVSSSTDNTLKLWDLSM---SISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETnevFVYHKAFPMPVLSYKF 748
                        250       260       270
                 ....*....|....*....|....*....|....
gi 334183179 322 GRLVNHQPLSILSASMDKTMMIWRPEKKTGVWVN 355
Cdd:PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782
WD40 pfam00400
WD domain, G-beta repeat;
687-724 9.46e-06

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 43.10  E-value: 9.46e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 334183179  687 KLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWS 724
Cdd:pfam00400   2 KLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
212-260 2.52e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 41.91  E-value: 2.52e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 334183179   212 KFTSVCELKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIWK 260
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFS---------PDGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
213-259 8.37e-05

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 40.41  E-value: 8.37e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 334183179  213 FTSVCELKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIW 259
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFS---------PDGKLLASGSDDGTVKVW 38
PTZ00420 PTZ00420
coronin; Provisional
640-744 1.93e-04

coronin; Provisional


Pssm-ID: 240412 [Multi-domain]  Cd Length: 568  Bit Score: 44.94  E-value: 1.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 640 VGRLQSHSLTVTHLEFS--YDDtLLLSVSRDRHFSVFSIQRTDNG--EVSHKLMAkVEAHKRIIWACSWNPFGHQFATSS 715
Cdd:PTZ00420  67 VIKLKGHTSSILDLQFNpcFSE-ILASGSEDLTIRVWEIPHNDESvkEIKDPQCI-LKGHKKKISIIDWNPMNYYIMCSS 144
                         90       100       110
                 ....*....|....*....|....*....|
gi 334183179 716 R-DKTVKIWSVENDARIKQIlVLPPFGSSV 744
Cdd:PTZ00420 145 GfDSFVNIWDIENEKRAFQI-NMPKKLSSL 173
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
54-443 3.16e-35

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 135.54  E-value: 3.16e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  54 TLPGHKASVNCTHWLPtskfafkakklDRQYLLSGDSDGIIILWELSTlnndqqwRHVLQLPLSHKKGVTCITAYMVSET 133
Cdd:cd00200    4 TLKGHTGGVTCVAFSP-----------DGKLLATGSGDGTIKVWDLET-------GELLRTLKGHTGPVRDVAASADGTY 65
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 134 damFASASSDGVVNVWDVSfpsqpseecKVVCLDSICVDTKAIVTLSLaelpqNPGRFALALGGLDNKIKLYSGErTGKF 213
Cdd:cd00200   66 ---LASGSSDKTIRLWDLE---------TGECVRTLTGHTSYVSSVAF-----SPDGRILSSSSRDKTIKVWDVE-TGKC 127
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 214 TSVceLKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIWklvlvgDVGSWRREITLAsyiegpvfvsgtftyq 293
Cdd:cd00200  128 LTT--LRGHTDWVNSVAFS---------PDGTFVASSSQDGTIKLW------DLRTGKCVATLT---------------- 174
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 294 isvesvliGHEDWVYSVEWQPpvidfiDGRlvnhqplSILSASMDKTMMIWRPEKKTgvwvnvvCVGELSHCALGFYGGH 373
Cdd:cd00200  175 --------GHTGEVNSVAFSP------DGE-------KLLSSSSDGTIKLWDLSTGK-------CLGTLRGHENGVNSVA 226
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 374 WSPNSLSILAHGYGGAFHLWRnvssskeSENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFS 443
Cdd:cd00200  227 FSPDGYLLASGSEDGTIRVWD-------LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
25-444 3.26e-33

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 132.73  E-value: 3.26e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  25 VSWGASGLVSFGAQNAVAVFCPKTAQILTTLPGHKASVNCTHWLPtskfafkakklDRQYLLSGDSDGIIILWELSTlnn 104
Cdd:COG2319   86 FSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSP-----------DGKTLASGSADGTVRLWDLAT--- 151
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 105 dQQWRHVLQlplSHKKGVTCITaymVSETDAMFASASSDGVVNVWDVSFPSqpseeckvvCLDSICVDTKAIVTLSLAel 184
Cdd:COG2319  152 -GKLLRTLT---GHSGAVTSVA---FSPDGKLLASGSDDGTVRLWDLATGK---------LLRTLTGHTGAVRSVAFS-- 213
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 185 PQnpGRFaLALGGLDNKIKLYSGErTGKFtsVCELKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIWklvlv 264
Cdd:COG2319  214 PD--GKL-LASGSADGTVRLWDLA-TGKL--LRTLTGHSGSVRSVAFS---------PDGRLLASGSADGTVRLW----- 273
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 265 gDVGSWRREITLAsyiegpvfvsgtftyqisvesvliGHEDWVYSVEWQPpvidfiDGRLvnhqplsILSASMDKTMMIW 344
Cdd:COG2319  274 -DLATGELLRTLT------------------------GHSGGVNSVAFSP------DGKL-------LASGSDDGTVRLW 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 345 RPEkkTGVWVNVVCVGELSHCALGFygghwSPNSLSILAHGYGGAFHLWrNVSSSKESENWQmqkvpsGHFAAVTDVTWA 424
Cdd:COG2319  316 DLA--TGKLLRTLTGHTGAVRSVAF-----SPDGKTLASGSDDGTVRLW-DLATGELLRTLT------GHTGAVTSVAFS 381
                        410       420
                 ....*....|....*....|
gi 334183179 425 RTGEYLLSVSQDQTTRVFSA 444
Cdd:COG2319  382 PDGRTLASGSADGTVRLWDL 401
WD40 COG2319
WD40 repeat [General function prediction only];
22-347 8.71e-27

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 113.85  E-value: 8.71e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  22 VNNVSWGASG--LVSFGAQNAVAVFCPKTAQILTTLPGHKASVNCTHWLPtskfafkakklDRQYLLSGDSDGIIILWEL 99
Cdd:COG2319  165 VTSVAFSPDGklLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-----------DGKLLASGSADGTVRLWDL 233
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 100 STlnndQQWRHVLQlplSHKKGVTCITaymVSETDAMFASASSDGVVNVWDVSFPSqpseeckvvCLDSICVDTKAIVTL 179
Cdd:COG2319  234 AT----GKLLRTLT---GHSGSVRSVA---FSPDGRLLASGSADGTVRLWDLATGE---------LLRTLTGHSGGVNSV 294
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 180 SLAelpqnP-GRFaLALGGLDNKIKLYSGErTGKftSVCELKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRI 258
Cdd:COG2319  295 AFS-----PdGKL-LASGSDDGTVRLWDLA-TGK--LLRTLTGHTGAVRSVAFS---------PDGKTLASGSDDGTVRL 356
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 259 WklvlvgDVGSWRREITLAsyiegpvfvsgtftyqisvesvliGHEDWVYSVEWQPpvidfiDGRLvnhqplsILSASMD 338
Cdd:COG2319  357 W------DLATGELLRTLT------------------------GHTGAVTSVAFSP------DGRT-------LASGSAD 393

                 ....*....
gi 334183179 339 KTMMIWRPE 347
Cdd:COG2319  394 GTVRLWDLA 402
WD40 COG2319
WD40 repeat [General function prediction only];
80-499 4.65e-25

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 108.46  E-value: 4.65e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  80 LDRQYLLSGDSDGIIILWELSTLNNDQQWRHVLQLPLSHKKGVTCITAYMVSETDAMFASASSDGVVNVWDVSFPSqpse 159
Cdd:COG2319   36 AAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGL---- 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 160 eckvvCLDSICVDTKAIVTLSLAelpqnPGRFALALGGLDNKIKLYSGErTGKFtsVCELKGHTDWIRSLDFSlplhtte 239
Cdd:COG2319  112 -----LLRTLTGHTGAVRSVAFS-----PDGKTLASGSADGTVRLWDLA-TGKL--LRTLTGHSGAVTSVAFS------- 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 240 eiPNSIMLVSSSQDKVIRIWklvlvgDVGSWRREITLAsyiegpvfvsgtftyqisvesvliGHEDWVYSVEWQPpvidf 319
Cdd:COG2319  172 --PDGKLLASGSDDGTVRLW------DLATGKLLRTLT------------------------GHTGAVRSVAFSP----- 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 320 iDGRLvnhqplsILSASMDKTMMIWRPEKKTgvwvnvvCVGELSHCALGFYGGHWSPNSlSILAHG-YGGAFHLWrNVSS 398
Cdd:COG2319  215 -DGKL-------LASGSADGTVRLWDLATGK-------LLRTLTGHSGSVRSVAFSPDG-RLLASGsADGTVRLW-DLAT 277
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 399 SKEsenwqmQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAwkndegneaedEHWHELARPQVHGHDINCVAMVQ 478
Cdd:COG2319  278 GEL------LRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDL-----------ATGKLLRTLTGHTGAVRSVAFSP 340
                        410       420
                 ....*....|....*....|.
gi 334183179 479 gkGNHRFVSGAEEKVVRVFEA 499
Cdd:COG2319  341 --DGKTLASGSDDGTVRLWDL 359
WD40 COG2319
WD40 repeat [General function prediction only];
89-727 6.67e-24

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 104.99  E-value: 6.67e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  89 DSDGIIILWELSTLNNDQQWRHVLQLPLSHKKGVTCITAYMVSETDAMFASASSDGVVNVWDVsfpsqpseeckvvcLDS 168
Cdd:COG2319    3 SADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDA--------------AAG 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 169 ICVDTKAIVTLSLAELPQNPGRFALALGGLDNKIKLYSGERTgkfTSVCELKGHTDWIRSLDFSlplhtteeiPNSIMLV 248
Cdd:COG2319   69 ALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATG---LLLRTLTGHTGAVRSVAFS---------PDGKTLA 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 249 SSSQDKVIRIWklvlvgDVGSWRREITLAsyiegpvfvsgtftyqisvesvliGHEDWVYSVEWQPpvidfiDGRLvnhq 328
Cdd:COG2319  137 SGSADGTVRLW------DLATGKLLRTLT------------------------GHSGAVTSVAFSP------DGKL---- 176
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 329 plsILSASMDKTMMIWRPEKktgvwvnvvcvGELSHcalgfygghwspnslsilahgyggafhlwrnvssskesenwqmq 408
Cdd:COG2319  177 ---LASGSDDGTVRLWDLAT-----------GKLLR-------------------------------------------- 198
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 409 kVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVFSAwkndegneaedEHWHELARPQVHGHDINCVAM-VQGKgnhRFVS 487
Cdd:COG2319  199 -TLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDL-----------ATGKLLRTLTGHSGSVRSVAFsPDGR---LLAS 263
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 488 GAEEKVVRVFeaplsflktlnhtcaggegsfpedlqaDVQvlganmsalglsqkpiylhssseplerngGGEGLDTFEtv 567
Cdd:COG2319  264 GSADGTVRLW---------------------------DLA-----------------------------TGELLRTLT-- 285
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 568 peaapaelkeppiedqlafhtlwpeshklyGHGNELFSLCSDHKGNLVASSCKAQSasmaeIWLWEVGTWKAVGRLQSHS 647
Cdd:COG2319  286 ------------------------------GHSGGVNSVAFSPDGKLLASGSDDGT-----VRLWDLATGKLLRTLTGHT 330
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 648 LTVTHLEFSYDDTLLLSVSRDRHFSVFSIqrtDNGEVSHKLmakvEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVEN 727
Cdd:COG2319  331 GAVRSVAFSPDGKTLASGSDDGTVRLWDL---ATGELLRTL----TGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLAT 403
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
32-260 1.38e-23

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 101.64  E-value: 1.38e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  32 LVSFGAQNAVAVFCPKTAQILTTLPGHKASVNCTHWLPTSKFafkakkldrqyLLSGDSDGIIILWELSTlnndqqWRHV 111
Cdd:cd00200  108 LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF-----------VASSSQDGTIKLWDLRT------GKCV 170
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 112 LQLPlSHKKGVTCITaymVSETDAMFASASSDGVVNVWDVSFPSqpseeckvvCLDSICVDTKAIVTLSLaelpqNPGRF 191
Cdd:cd00200  171 ATLT-GHTGEVNSVA---FSPDGEKLLSSSSDGTIKLWDLSTGK---------CLGTLRGHENGVNSVAF-----SPDGY 232
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334183179 192 ALALGGLDNKIKLYSGErtgKFTSVCELKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIWK 260
Cdd:cd00200  233 LLASGSEDGTIRVWDLR---TGECVQTLSGHTNSVTSLAWS---------PDGKRLASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
299-750 6.01e-22

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 99.22  E-value: 6.01e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 299 VLIGHEDWVYSVEWQPpvidfiDGRLvnhqplsILSASMDKTMMIWRPEKKTGVWVNVVCVGELSHCAlgfygghWSPNS 378
Cdd:COG2319   73 TLLGHTAAVLSVAFSP------DGRL-------LASASADGTVRLWDLATGLLLRTLTGHTGAVRSVA-------FSPDG 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 379 LSILAHGYGGAFHLWrnvssskESENWQMQKVPSGHFAAVTDVTWARTGEYLLSVSQDQTTRVfsaWKNDEGNEaedehw 458
Cdd:COG2319  133 KTLASGSADGTVRLW-------DLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRL---WDLATGKL------ 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 459 heLARPQVHGHDINCVAMvqGKGNHRFVSGAEEKVVRVFEAPlsflktlnhtcaggegsfpedlqadvqvlganmsalgl 538
Cdd:COG2319  197 --LRTLTGHTGAVRSVAF--SPDGKLLASGSADGTVRLWDLA-------------------------------------- 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 539 sqkpiylhssseplerngGGEGLDTFEtvpeaapaelkeppiedqlafhtlwpeshklyGHGNELFSLCSDHKGNLVASS 618
Cdd:COG2319  235 ------------------TGKLLRTLT--------------------------------GHSGSVRSVAFSPDGRLLASG 264
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 619 CKAQSasmaeIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQrtdngevSHKLMAKVEAHKRI 698
Cdd:COG2319  265 SADGT-----VRLWDLATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLA-------TGKLLRTLTGHTGA 332
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|..
gi 334183179 699 IWACSWNPFGHQFATSSRDKTVKIWSVENDariKQILVLPPFGSSVTAVAWT 750
Cdd:COG2319  333 VRSVAFSPDGKTLASGSDDGTVRLWDLATG---ELLRTLTGHTGAVTSVAFS 381
WD40 COG2319
WD40 repeat [General function prediction only];
594-837 2.60e-20

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 94.21  E-value: 2.60e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 594 HKLYGHGNELFSLCSDHKGNLVASSCKAQSasmaeIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSV 673
Cdd:COG2319  114 RTLTGHTGAVRSVAFSPDGKTLASGSADGT-----VRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRL 188
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 674 FSIQrtdngevSHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDariKQILVLPPFGSSVTAVAWTGLD 753
Cdd:COG2319  189 WDLA-------TGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATG---KLLRTLTGHSGSVRSVAFSPDG 258
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 754 RneksgCVAVGMESGLIELSNVkiieteegttATAALALRLEPfmcHVSAVNRLAWRPTEkcesnqslRWLTSCGDDNCV 833
Cdd:COG2319  259 R-----LLASGSADGTVRLWDL----------ATGELLRTLTG---HSGGVNSVAFSPDG--------KLLASGSDDGTV 312

                 ....
gi 334183179 834 RVFN 837
Cdd:COG2319  313 RLWD 316
WD40 COG2319
WD40 repeat [General function prediction only];
594-837 1.29e-19

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 92.28  E-value: 1.29e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 594 HKLYGHGNELFSLCSDHKGNLVASSCKAQSasmaeIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSV 673
Cdd:COG2319  156 RTLTGHSGAVTSVAFSPDGKLLASGSDDGT-----VRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 674 FSIQRTdngevshKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKqilVLPPFGSSVTAVAWTGLD 753
Cdd:COG2319  231 WDLATG-------KLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLR---TLTGHSGGVNSVAFSPDG 300
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 754 RNeksgcVAVGMESGLIELSNVkiieteegttATAALALRLEPfmcHVSAVNRLAWRPTEkcesnqslRWLTSCGDDNCV 833
Cdd:COG2319  301 KL-----LASGSDDGTVRLWDL----------ATGKLLRTLTG---HTGAVRSVAFSPDG--------KTLASGSDDGTV 354

                 ....
gi 334183179 834 RVFN 837
Cdd:COG2319  355 RLWD 358
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
299-724 1.41e-19

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 90.09  E-value: 1.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 299 VLIGHEDWVYSVEWQPpvidfiDGRLvnhqplsILSASMDKTMMIWRPEKKTGVWVNVVCVGELSHCAlgfygghWSPNS 378
Cdd:cd00200    4 TLKGHTGGVTCVAFSP------DGKL-------LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA-------ASADG 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 379 LSILAHGYGGAFHLWrNVSSSKESENWQmqkvpsGHFAAVTDVTWARTGEYLLSVSQDQTTRVfsaWKNDEGNEaedehw 458
Cdd:cd00200   64 TYLASGSSDKTIRLW-DLETGECVRTLT------GHTSYVSSVAFSPDGRILSSSSRDKTIKV---WDVETGKC------ 127
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 459 heLARPQVHGHDINCVAMvqgKGNHRFVSGA-EEKVVRVFEaplsflktlnhtcaggegsfpedlqadvqvlganmsalg 537
Cdd:cd00200  128 --LTTLRGHTDWVNSVAF---SPDGTFVASSsQDGTIKLWD--------------------------------------- 163
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 538 lsqkpiylhssseplerngggegLDTFETVpeaapaelkeppiedqlafhtlwpesHKLYGHGNELFSLCSDHKGNLVAS 617
Cdd:cd00200  164 -----------------------LRTGKCV--------------------------ATLTGHTGEVNSVAFSPDGEKLLS 194
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 618 SckaqsASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFsiqRTDNGEVSHKLmakvEAHKR 697
Cdd:cd00200  195 S-----SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW---DLRTGECVQTL----SGHTN 262
                        410       420
                 ....*....|....*....|....*..
gi 334183179 698 IIWACSWNPFGHQFATSSRDKTVKIWS 724
Cdd:cd00200  263 SVTSLAWSPDGKRLASGSADGTIRIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
592-837 9.83e-19

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 87.39  E-value: 9.83e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 592 ESHKLYGHGNELFSLCSDHKGNLVASSCKAQSasmaeIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHF 671
Cdd:cd00200   85 CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT-----IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 672 SVFSIQrtdngevSHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDariKQILVLPPFGSSVTAVAWTG 751
Cdd:cd00200  160 KLWDLR-------TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSP 229
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 752 LDRNeksgcVAVGMESGLIelsnvKIIETEEGTTataalalrLEPFMCHVSAVNRLAWRPTEKcesnqslrWLTSCGDDN 831
Cdd:cd00200  230 DGYL-----LASGSEDGTI-----RVWDLRTGEC--------VQTLSGHTNSVTSLAWSPDGK--------RLASGSADG 283

                 ....*.
gi 334183179 832 CVRVFN 837
Cdd:cd00200  284 TIRIWD 289
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
592-839 1.33e-16

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 81.23  E-value: 1.33e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 592 ESHKLYGHGNELFSLCSDHKGNLVASSCKAQSASMaeiwlWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHF 671
Cdd:cd00200    1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKV-----WDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTI 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 672 SVFSIQrtdNGEVSHKLmakvEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDariKQILVLPPFGSSVTAVAWTG 751
Cdd:cd00200   76 RLWDLE---TGECVRTL----TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---KCLTTLRGHTDWVNSVAFSP 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 752 LDRneksgCVAVGMESGLI---ELSNVKIIETEEGttataalalrlepfmcHVSAVNRLAWRPTEkcesnqslRWLTSCG 828
Cdd:cd00200  146 DGT-----FVASSSQDGTIklwDLRTGKCVATLTG----------------HTGEVNSVAFSPDG--------EKLLSSS 196
                        250
                 ....*....|.
gi 334183179 829 DDNCVRVFNFK 839
Cdd:cd00200  197 SDGTIKLWDLS 207
WD40 COG2319
WD40 repeat [General function prediction only];
621-837 2.08e-14

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 76.10  E-value: 2.08e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 621 AQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQrtdngevSHKLMAKVEAHKRIIW 700
Cdd:COG2319   52 AAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLA-------TGLLLRTLTGHTGAVR 124
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 701 ACSWNPFGHQFATSSRDKTVKIWSVENDariKQILVLPPFGSSVTAVAWTGLDRNeksgcVAVGMESGlielsNVKIIET 780
Cdd:COG2319  125 SVAFSPDGKTLASGSADGTVRLWDLATG---KLLRTLTGHSGAVTSVAFSPDGKL-----LASGSDDG-----TVRLWDL 191
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 334183179 781 EEGTtataalalRLEPFMCHVSAVNRLAWRPTEkcesnqslRWLTSCGDDNCVRVFN 837
Cdd:COG2319  192 ATGK--------LLRTLTGHTGAVRSVAFSPDG--------KLLASGSADGTVRLWD 232
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
594-839 1.52e-12

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 68.90  E-value: 1.52e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 594 HKLYGHGNELFSLCSDHKGNLVASSCKAQSasmaeIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSV 673
Cdd:cd00200   45 RTLKGHTGPVRDVAASADGTYLASGSSDKT-----IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 674 FSIQRTdngevshKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWSVENDARIKqilVLPPFGSSVTAVAWTGld 753
Cdd:cd00200  120 WDVETG-------KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA---TLTGHTGEVNSVAFSP-- 187
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 754 rneKSGCVAVGMESGlielsNVKIIETEEGTTataalalrLEPFMCHVSAVNRLAWrptekcesNQSLRWLTSCGDDNCV 833
Cdd:cd00200  188 ---DGEKLLSSSSDG-----TIKLWDLSTGKC--------LGTLRGHENGVNSVAF--------SPDGYLLASGSEDGTI 243

                 ....*.
gi 334183179 834 RVFNFK 839
Cdd:cd00200  244 RVWDLR 249
WD40 COG2319
WD40 repeat [General function prediction only];
10-152 2.21e-10

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 63.39  E-value: 2.21e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  10 KRVFIGAGCNRVVNNVSWGASG--LVSFGAQNAVAVFCPKTAQILTTLPGHKASVNCTHWLPtskfafkakklDRQYLLS 87
Cdd:COG2319  279 ELLRTLTGHSGGVNSVAFSPDGklLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-----------DGKTLAS 347
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334183179  88 GDSDGIIILWELSTlnndqqwRHVLQLPLSHKKGVTCITaymVSETDAMFASASSDGVVNVWDVS 152
Cdd:COG2319  348 GSDDGTVRLWDLAT-------GELLRTLTGHTGAVTSVA---FSPDGRTLASGSADGTVRLWDLA 402
WD40 COG2319
WD40 repeat [General function prediction only];
621-837 6.05e-07

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 52.61  E-value: 6.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 621 AQSASMAEIWLWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFSIQRTdngevshKLMAKVEAHKRIIW 700
Cdd:COG2319   10 AAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAG-------ALLATLLGHTAAVL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 701 ACSWNPFGHQFATSSRDKTVKIWSVENDARIKQilvLPPFGSSVTAVAWTgldRNEKSgcVAVGMESGlielsNVKIIET 780
Cdd:COG2319   83 SVAFSPDGRLLASASADGTVRLWDLATGLLLRT---LTGHTGAVRSVAFS---PDGKT--LASGSADG-----TVRLWDL 149
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 334183179 781 EEGTtataalalRLEPFMCHVSAVNRLAWRPTEKcesnqslrWLTSCGDDNCVRVFN 837
Cdd:COG2319  150 ATGK--------LLRTLTGHSGAVTSVAFSPDGK--------LLASGSDDGTVRLWD 190
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
685-724 1.15e-06

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 45.77  E-value: 1.15e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 334183179   685 SHKLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWS 724
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
PLN00181 PLN00181
protein SPA1-RELATED; Provisional
87-355 4.39e-06

protein SPA1-RELATED; Provisional


Pssm-ID: 177776 [Multi-domain]  Cd Length: 793  Bit Score: 50.47  E-value: 4.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  87 SGDSDGIIILWELStlnndqqwRHVLQLPL-SHKKGVTCITaymVSETD-AMFASASSDGVVNVWDVSfpsqpseecKVV 164
Cdd:PLN00181 550 SSNFEGVVQVWDVA--------RSQLVTEMkEHEKRVWSID---YSSADpTLLASGSDDGSVKLWSIN---------QGV 609
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 165 CLDSIcvDTKAivTLSLAELPQNPGRfALALGGLDNKIKLYSgERTGKFtSVCELKGHTDWIRSLDFSlplhtteeipNS 244
Cdd:PLN00181 610 SIGTI--KTKA--NICCVQFPSESGR-SLAFGSADHKVYYYD-LRNPKL-PLCTMIGHSKTVSYVRFV----------DS 672
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 245 IMLVSSSQDKVIRIWKLVLvgdVGSWRREITLASYIeGPVFVSGTFTYQISVESVLIGHED---WVYSVEWQPPVIDFID 321
Cdd:PLN00181 673 STLVSSSTDNTLKLWDLSM---SISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSETnevFVYHKAFPMPVLSYKF 748
                        250       260       270
                 ....*....|....*....|....*....|....
gi 334183179 322 GRLVNHQPLSILSASMDKTMMIWRPEKKTGVWVN 355
Cdd:PLN00181 749 KTIDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782
WD40 pfam00400
WD domain, G-beta repeat;
687-724 9.46e-06

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 43.10  E-value: 9.46e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 334183179  687 KLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWS 724
Cdd:pfam00400   2 KLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
212-260 2.52e-05

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 41.91  E-value: 2.52e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 334183179   212 KFTSVCELKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIWK 260
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFS---------PDGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
213-259 8.37e-05

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 40.41  E-value: 8.37e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 334183179  213 FTSVCELKGHTDWIRSLDFSlplhtteeiPNSIMLVSSSQDKVIRIW 259
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFS---------PDGKLLASGSDDGTVKVW 38
WD40 COG2319
WD40 repeat [General function prediction only];
22-101 1.08e-04

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 45.67  E-value: 1.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179  22 VNNVSWGASG--LVSFGAQNAVAVFCPKTAQILTTLPGHKASVNCTHWLPtskfafkakklDRQYLLSGDSDGIIILWEL 99
Cdd:COG2319  333 VRSVAFSPDGktLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSP-----------DGRTLASGSADGTVRLWDL 401

                 ..
gi 334183179 100 ST 101
Cdd:COG2319  402 AT 403
PTZ00420 PTZ00420
coronin; Provisional
640-744 1.93e-04

coronin; Provisional


Pssm-ID: 240412 [Multi-domain]  Cd Length: 568  Bit Score: 44.94  E-value: 1.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334183179 640 VGRLQSHSLTVTHLEFS--YDDtLLLSVSRDRHFSVFSIQRTDNG--EVSHKLMAkVEAHKRIIWACSWNPFGHQFATSS 715
Cdd:PTZ00420  67 VIKLKGHTSSILDLQFNpcFSE-ILASGSEDLTIRVWEIPHNDESvkEIKDPQCI-LKGHKKKISIIDWNPMNYYIMCSS 144
                         90       100       110
                 ....*....|....*....|....*....|
gi 334183179 716 R-DKTVKIWSVENDARIKQIlVLPPFGSSV 744
Cdd:PTZ00420 145 GfDSFVNIWDIENEKRAFQI-NMPKKLSSL 173
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
48-98 5.79e-04

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 38.06  E-value: 5.79e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 334183179    48 TAQILTTLPGHKASVNCTHWLPtskfafkakklDRQYLLSGDSDGIIILWE 98
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSP-----------DGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
50-98 8.81e-03

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 34.63  E-value: 8.81e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 334183179   50 QILTTLPGHKASVNCTHWLPtskfafkakklDRQYLLSGDSDGIIILWE 98
Cdd:pfam00400   2 KLLKTLEGHTGSVTSLAFSP-----------DGKLLASGSDDGTVKVWD 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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