|
Name |
Accession |
Description |
Interval |
E-value |
| TMF_TATA_bd |
pfam12325 |
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil ... |
875-971 |
2.41e-19 |
|
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family.
Pssm-ID: 432481 [Multi-domain] Cd Length: 115 Bit Score: 84.52 E-value: 2.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 875 ATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRVPGIKAELEALRQRHAAALELMGERDEELEELR 954
Cdd:pfam12325 19 STIRRLEGELASLKEELARLEAQRDEARQEIVKLMKENEELKELKKELEELEKELKELEQRYETTLELLGEKSEEVEELK 98
|
90
....*....|....*..
gi 334184028 955 ADIVDLKEMYREQVNML 971
Cdd:pfam12325 99 ADVEDLKEMYREQVQQL 115
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
392-749 |
4.13e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 4.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 392 NEAEVESLREEYHQRVATLER------KVYALTKERDTLRREQ--NKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQE 463
Cdd:COG1196 187 NLERLEDILGELERQLEPLERqaekaeRYRELKEELKELEAELllLKLRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 464 AQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQEtIEKHQAELTSQKdyysnalaaakeaqalaeeR 543
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE-LEERLEELEEEL-------------------A 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 544 TNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQvksrcfvvsmhisffgyRLL 623
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE-----------------ELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 624 ASERRCEELITQvpestrplLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVL 703
Cdd:COG1196 390 EALRAAAELAAQ--------LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 334184028 704 EAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRA 749
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
339-820 |
2.74e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 2.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 339 ILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLksvtedlkrksnEAEVESLREEYHQRVATLERKVYALT 418
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEL------------EAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 419 KERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIK 498
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 499 RDKTATEKLLQETIEKHQAELTSQkdyysnALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLS 578
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAA------AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 579 KKEQQAVYREDMFRGEIEDLQRRyqvksrcfvvsmhisffGYRLLASERRCEELITQVPESTRPLLRQIEAMQETSYRTA 658
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAEL-----------------LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 659 EAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK-ERQRAAENRQEYLA 737
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRaTFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 738 AKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQNSAFEN 817
Cdd:COG1196 589 AAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
...
gi 334184028 818 GSL 820
Cdd:COG1196 669 ELL 671
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
305-797 |
7.36e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 7.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 305 DFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAK-LMHENEQLKSV 383
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 384 TEDLKRksNEAEVESLREEYHQRVATLERKvyaltkERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQE 463
Cdd:COG1196 315 EERLEE--LEEELAELEEELEELEEELEEL------EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 464 AQIRKLRAQIREAEEEkKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDyysnalAAAKEAQALAEER 543
Cdd:COG1196 387 ELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE------AAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 544 TNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQVKSRCFVVSMHISFFGYRLL 623
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 624 ASERRCEELITQVPESTRPLLRQIE----------------------AMQETSYRTAEAWAAVERTLNSRLQEAESKAAT 681
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEylkaakagratflpldkiraraALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 682 AEERERS-VNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELR 760
Cdd:COG1196 620 DTLLGRTlVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510
....*....|....*....|....*....|....*..
gi 334184028 761 RKHKQELQEVLLHNELIQKDLEREKASRLDLERTARI 797
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
319-976 |
2.64e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 2.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 319 ELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHE-NEQLKSVTEDLKRKSNE-AEV 396
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSElEEEIEELQKELYALANEiSRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 397 ESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVM----AEGEELSKKQAAQEAQIRKLRAQ 472
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELesleAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 473 IREAEEEKKGLITKLQSEENKVESIKRDKTAteklLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSEL 552
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLER----LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 553 EnRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDM-----------FRGEIEDLQRRYQVKSRCFVVSMHISF-FGY 620
Cdd:TIGR02168 457 E-RLEEALEELREELEEAEQALDAAERELAQLQARLDSlerlqenlegfSEGVKALLKNQSGLSGILGVLSELISVdEGY 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 621 RLlASERRCEELITQ-VPESTRPLLRQIEAMQETSYRTAeAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSR 699
Cdd:TIGR02168 536 EA-AIEAALGGRLQAvVVENLNAAKKAIAFLKQNELGRV-TFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 700 I-NVLEAQLSCL-----------------------------------------RAEQGQLSKS--LEKERQRAAENRQEY 735
Cdd:TIGR02168 614 LrKALSYLLGGVlvvddldnalelakklrpgyrivtldgdlvrpggvitggsaKTNSSILERRreIEELEEKIEELEEKI 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 736 LAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVllhnELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQNSAF 815
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLRKELEELSRQI----SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 816 ENGSLPRKLSSASSLGSMEESY--FLQASLDSSDKFSEKRSMPEATMSPYYMKSITPSAYEATLRQKEGELASYMTRLAS 893
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIeqLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 894 MESIRDSLAEELVKMTAECEKLRGEADRVPGIKAELEALRQRHAAALELMGERDEELEELRADIVDLKEMYREQVNMLVN 973
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
...
gi 334184028 974 KIQ 976
Cdd:TIGR02168 930 RLE 932
|
|
| TMF_DNA_bd |
pfam12329 |
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA ... |
432-505 |
4.98e-10 |
|
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures.. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells.
Pssm-ID: 372049 [Multi-domain] Cd Length: 74 Bit Score: 56.55 E-value: 4.98e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334184028 432 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATE 505
Cdd:pfam12329 1 SSLEKLLKEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKNKELEKEIAELKKKLEKLEKELENLEERLKRAE 74
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
401-741 |
5.80e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 5.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 401 EEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIinqvmaEGEELSKKQAAQEAQIRKLRAQIREAEEEK 480
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY------EGYELLKEKEALERQKEAIERQLASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 481 KGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQkdyysnalAAAKEAQALAEERTNNEARSELENRLKEAG 560
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK--------IGELEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 561 ERESMLVQALEELRQTLSKKEQQAVYRE------DMFRGEIEDLQRRYQVKSRCFVVSMHisffgyRLLASERRCEELIT 634
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDklteeyAELKEELEDLRAELEEVDKEFAETRD------ELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 635 QVPESTRPLLRQIEAMQETSYRTAEAWAAVERtLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQ 714
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAG-IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY 478
|
330 340 350
....*....|....*....|....*....|....*.
gi 334184028 715 GQLSKSLEK---------ERQRAAENRQEYLAAKEE 741
Cdd:TIGR02169 479 DRVEKELSKlqrelaeaeAQARASEERVRGGRAVEE 514
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
341-941 |
3.05e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 3.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLkrksnEAEVESLREEYHQ----------RVATL 410
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL-----EEQLETLRSKVAQlelqiaslnnEIERL 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 411 ERKVYALTKERDTLRREQNKKSDAA--ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQ 488
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLeeAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 489 SEENKVESIKRDKTATEKLLQE--TIEKHQAEL-----------TSQKDYYSNALAAAKEAQALAEERTNNEARSELENR 555
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSEGvkALLKNQSGLsgilgvlseliSVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFL 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 556 LKEAGERESMLVQALEELRQTLSKKEQQA-------------VYREDMFRGEIE----------------DLQRRYQVKS 606
Cdd:TIGR02168 566 KQNELGRVTFLPLDSIKGTEIQGNDREILkniegflgvakdlVKFDPKLRKALSyllggvlvvddldnalELAKKLRPGY 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 607 RCFVVSMHISFFGYRLLASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERE 686
Cdd:TIGR02168 646 RIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 687 RSVNE---RLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKH 763
Cdd:TIGR02168 726 RQISAlrkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 764 KQELQEVLLHNELIQKDLEREKASRLDLERTARinssavseQLPIARQNSAFENGSLprkLSSASSLGSMEESyfLQASL 843
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATER--------RLEDLEEQIEELSEDI---ESLAAEIEELEEL--IEELE 872
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 844 DSSDKFSEKRSMPEATMspyymksitpSAYEATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRVP 923
Cdd:TIGR02168 873 SELEALLNERASLEEAL----------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
650
....*....|....*...
gi 334184028 924 GIKAELEALRQRHAAALE 941
Cdd:TIGR02168 943 ERLSEEYSLTLEEAEALE 960
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
378-476 |
5.83e-09 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 59.31 E-value: 5.83e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 378 EQLKSVTEDLKRKSNEAEVESLREeyhqrvatLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSK 457
Cdd:PRK05431 9 ENPEAVKEALAKRGFPLDVDELLE--------LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKE 80
|
90
....*....|....*....
gi 334184028 458 KQAAQEAQIRKLRAQIREA 476
Cdd:PRK05431 81 EIKALEAELDELEAELEEL 99
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
393-761 |
6.03e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.05 E-value: 6.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 393 EAEVESLRE-EYHQRVATLERKVYALTKErdtLRREQNKKSDAAALLKEKDEIInqvmAEGEELSKKQAAQEAQIRKLRA 471
Cdd:PRK02224 193 KAQIEEKEEkDLHERLNGLESELAELDEE---IERYEEQREQARETRDEADEVL----EEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 472 QIREAEEEKKGLITKLQSEENKVESIK------RDKTATEKLLQETIEKHQAELTSQKDyysnALAAAKEAQALAEERTN 545
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEeerddlLAEAGLDDADAEAVEARREELEDRDE----ELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 546 NEARS------ELENRLKEAGERESMLVQALEELRQTLSK-KEQQAVYREDMF------------RGEIED-----LQRR 601
Cdd:PRK02224 342 EEAESlredadDLEERAEELREEAAELESELEEAREAVEDrREEIEELEEEIEelrerfgdapvdLGNAEDfleelREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 602 YQVKSRCFVVSMHISFFGYRL-----LASERRCEELITQVPEStrPLLRQIEAMQETSYRTAEAWAAVERTLNSR----- 671
Cdd:PRK02224 422 DELREREAELEATLRTARERVeeaeaLLEAGKCPECGQPVEGS--PHVETIEEDRERVEELEAELEDLEEEVEEVeerle 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 672 ----LQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEG 747
Cdd:PRK02224 500 raedLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579
|
410
....*....|....
gi 334184028 748 RANQLEVEIRELRR 761
Cdd:PRK02224 580 KLAELKERIESLER 593
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
450-793 |
7.68e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 7.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 450 AEGEELSKKQAAQEAQIRKLRAQIREAEEEkkglitkLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNA 529
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKE-------LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 530 LAAAKEAQALAEERTNNEARSELENRLKEAGERESmlvQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQVKSRcf 609
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEI---EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE-- 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 610 vvsmhisffgyRLLASERRCEELITQVPEstrpLLRQIEAMQEtsyrtaeawaavertlnsRLQEAESKAATAEERERSV 689
Cdd:TIGR02168 825 -----------RLESLERRIAATERRLED----LEEQIEELSE------------------DIESLAAEIEELEELIEEL 871
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 690 NERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRE----LRRKHKQ 765
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNlqerLSEEYSL 951
|
330 340
....*....|....*....|....*...
gi 334184028 766 ELQEVLLHNELIQKDLEREKASRLDLER 793
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRRLKRLEN 979
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
341-523 |
4.38e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.31 E-value: 4.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHE----NEQLKSVTEDLKR-----KSNEAEVESLREEYHQRVATLE 411
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalARRIRALEQELAAleaelAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 412 RKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEE 491
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190
....*....|....*....|....*....|..
gi 334184028 492 NKVESIKRDKTATEKLLQETIEKHQAELTSQK 523
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQ 219
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
295-758 |
1.85e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 1.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 295 SSDEISERIVDFVSR--EIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKE-IKMLENALQGAARQAQAKADEIA 371
Cdd:PRK02224 308 DAEAVEARREELEDRdeELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREeAAELESELEEAREAVEDRREEIE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 372 KLMHENEQLKSVTEDLKRKSNEAE-----VESLREEYHQRVATLERkvyaltkerdTLRREQNKKSDAAALLKEKDEIIN 446
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAEdfleeLREERDELREREAELEA----------TLRTARERVEEAEALLEAGKCPEC 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 447 QVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEK--LLQETIEKHQAELTSQKD 524
Cdd:PRK02224 458 GQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERreDLEELIAERRETIEEKRE 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 525 YYS--NALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLvQALEELRQTLSKKEQQAVYREDmFRGEIEDLQRRY 602
Cdd:PRK02224 538 RAEelRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL-AELKERIESLERIRTLLAAIAD-AEDEIERLREKR 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 603 QVKSRcfvvsmhisffgyrlLASERRceelitqvpestrpllrqiEAMQETSYRTAEAWAAVErtlNSRLQEAESKAATA 682
Cdd:PRK02224 616 EALAE---------------LNDERR-------------------ERLAEKRERKRELEAEFD---EARIEEAREDKERA 658
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184028 683 EERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLsKSLeKERQRAAENRQEYLAA-KEEADTLEGRANQLEVEIRE 758
Cdd:PRK02224 659 EEYLEQVEEKLDELREERDDLQAEIGAVENELEEL-EEL-RERREALENRVEALEAlYDEAEELESMYGDLRAELRQ 733
|
|
| SerS |
COG0172 |
Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Seryl-tRNA synthetase ... |
378-476 |
6.77e-07 |
|
Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Seryl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439942 [Multi-domain] Cd Length: 421 Bit Score: 52.70 E-value: 6.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 378 EQLKSVTEDLKRKSNEAEVESLREeyhqrvatLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSK 457
Cdd:COG0172 9 ENPEAVKEALAKRGFDLDVDELLE--------LDEERRELQTEVEELRAERNALSKEIGKAKKKGEEAEALIAEVKELKE 80
|
90
....*....|....*....
gi 334184028 458 KQAAQEAQIRKLRAQIREA 476
Cdd:COG0172 81 EIKELEEELKELEEELDEL 99
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
293-514 |
1.03e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 293 RSSSDEISERIVDFVSREIDSRLDTSELNES---QRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADE 369
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDlarLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 370 IAKLMHENEQLKSVTEDLKRKSNE--AEVESLREEYHQ---RVATLERKVYALTKERDTLRREQNKKSD----AAALLKE 440
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDElrAELTLLNEEAANlreRLESLERRIAATERRLEDLEEQIEELSEdiesLAAEIEE 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 441 KDEIINQVMAEGEELSKKQAAQEAQIRKLR-------AQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIE 513
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRseleelsEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
.
gi 334184028 514 K 514
Cdd:TIGR02168 944 R 944
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
359-922 |
1.13e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.92 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 359 AARQAQAKADEIAKLMHENEQLKSVTEDLKR-----KSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQN---- 429
Cdd:pfam12128 232 AIAGIMKIRPEFTKLQQEFNTLESAELRLSHlhfgyKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgels 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 430 -KKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLL 508
Cdd:pfam12128 312 aADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRD 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 509 QETIEKHQAELTSQKDyysnalaAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSK-------KE 581
Cdd:pfam12128 392 IAGIKDKLAKIREARD-------RQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQatatpelLL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 582 QQAVYREDMFRG---------EIEDLQR-RYQVKSRCFVVSMHISFFGYRLLASERRCEELITQV---PESTRPLLRQIE 648
Cdd:pfam12128 465 QLENFDERIERAreeqeaanaEVERLQSeLRQARKRRDQASEALRQASRRLEERQSALDELELQLfpqAGTLLHFLRKEA 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 649 AMQETS----------YRT----------------------------AEAWAAVERTLNSRLQEAESKAATAEERERSVN 690
Cdd:pfam12128 545 PDWEQSigkvispellHRTdldpevwdgsvggelnlygvkldlkridVPEWAASEEELRERLDKAEEALQSAREKQAAAE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 691 ERLSQTLSRINVLEAQLSCLRA-------EQGQL-----SKSLEKERQRAAENRQeylaAKEEADTLEGRANQLEVEIRE 758
Cdd:pfam12128 625 EQLVQANGELEKASREETFARTalknarlDLRRLfdekqSEKDKKNKALAERKDS----ANERLNSLEAQLKQLDKKHQA 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 759 LRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTA----RINSSAVSEQLPIARQNSAFENGSLPRKLSSASSLGSME 834
Cdd:pfam12128 701 WLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAiaarRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTL 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 835 ESYFLQASLDSSDKFSEKRSMPEATMSPYYMKSITPSAYEATLRQKEGEL----ASYMTRLASMESIRDSLAEELVKMTA 910
Cdd:pfam12128 781 ERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLarliADTKLRRAKLEMERKASEKQQVRLSE 860
|
650
....*....|..
gi 334184028 911 ECEKLRGEADRV 922
Cdd:pfam12128 861 NLRGLRCEMSKL 872
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
343-784 |
1.26e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 1.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 343 EKTKKEIKMLENaLQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVEslREEYHQRVATLERKVYALTKERD 422
Cdd:PRK03918 148 EKVVRQILGLDD-YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKE--LEEVLREINEISSELPELREELE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 423 TLRREQNKksdaaalLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEkkglITKLQSEENKVESIKRDKT 502
Cdd:PRK03918 225 KLEKEVKE-------LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE----IEELEEKVKELKELKEKAE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 503 ATEKlLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEAR-SELENRLKEAGERESMLVQALEELRQTLSKKE 581
Cdd:PRK03918 294 EYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERlEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 582 QQAVYREDMFRGEIEDLQRRYQ-VKSRCFVVSMHISFFGYRLLASERRCEELITQVPE-----STRPLLRQiEAMQETSY 655
Cdd:PRK03918 373 ELERLKKRLTGLTPEKLEKELEeLEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakGKCPVCGR-ELTEEHRK 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 656 RTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTlSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAEnrqEY 735
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKE-SELIKLKELAEQLKELEEKLKKYNLEELEKKAE---EY 527
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 334184028 736 LAAKEEADTLEGRANQLEVEIRELR--RKHKQELQEVLLHNELIQKDLERE 784
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKELEKLEelKKKLAELEKKLDELEEELAELLKE 578
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
315-773 |
1.44e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 315 LDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEqLKSVTEDLKRKsnEA 394
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE-LEALEAELAEL--PE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 395 EVESLREEYHQRvATLERKVYALTKERDTLRREQNKKSDAAALLKEKDeiINQVMAEGEELSKKQAAQEAQIRKLRAQIR 474
Cdd:COG4717 147 RLEELEERLEEL-RELEEELEELEAELAELQEELEELLEQLSLATEEE--LQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 475 EAEEEKKGLITKLQSEEnKVESIKRDKT----ATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARS 550
Cdd:COG4717 224 ELEEELEQLENELEAAA-LEERLKEARLllliAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 551 ELEnRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQVKSRCFVVsmhisffgYRLLASERRCE 630
Cdd:COG4717 303 EAE-ELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE--------LQLEELEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 631 ELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERErsVNERLSQTLSRINVLEAQLSCL 710
Cdd:COG4717 374 ALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELEEELEELEEELEEL 451
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334184028 711 RAEQGQLSKSLEK--ERQRAAENRQEYLAAKEEADTLEGRANQLEVE---IRELRRKHKQELQEVLLH 773
Cdd:COG4717 452 REELAELEAELEQleEDGELAELLQELEELKAELRELAEEWAALKLAlelLEEAREEYREERLPPVLE 519
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
292-795 |
1.69e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 292 KRSSSDEISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQaKADEIA 371
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK-KADEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 372 KlmhENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRR-EQNKKSDAAALLKEKDEIINQVMA 450
Cdd:PTZ00121 1322 K---KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKeEAKKKADAAKKKAEEKKKADEAKK 1398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 451 EGEELSKKQ---AAQEAQIRKLRAQIREAEEEKKGLITKLQSEE-NKVESIKR---DKTATEKLLQETIEKHQAElTSQK 523
Cdd:PTZ00121 1399 KAEEDKKKAdelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEaKKADEAKKkaeEAKKAEEAKKKAEEAKKAD-EAKK 1477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 524 DYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRgEIEDLQRRYQ 603
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK-KADELKKAEE 1556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 604 VKSRCFVVSmhisffgyrllASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAE 683
Cdd:PTZ00121 1557 LKKAEEKKK-----------AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 684 ERERSVNERLSQTLSRINVLEAQLSCLRAEQ-------GQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEvEI 756
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEeenkikaAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KA 1704
|
490 500 510
....*....|....*....|....*....|....*....
gi 334184028 757 RELRRKHKQELQEVllhnELIQKDLEREKASRLDLERTA 795
Cdd:PTZ00121 1705 EELKKKEAEEKKKA----EELKKAEEENKIKAEEAKKEA 1739
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
341-760 |
1.92e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 1.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLmhENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTKE 420
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEEL--AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 421 RDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRD 500
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 501 -KTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSK 579
Cdd:COG1196 510 vKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 580 KEQQAVYREDMFRGeIEDLQRRYQVKSRCFVVSMHISFFGYRLLASERRCEELITQVPESTRPLLRQIEAMQETSYRTAE 659
Cdd:COG1196 590 AALARGAIGAAVDL-VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 660 AWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENR------- 732
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELleeeell 748
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184028 733 ---------------------------------------QEYLAAKEEADTLEGRANQLEVEIRELR 760
Cdd:COG1196 749 eeealeelpeppdleelerelerlereiealgpvnllaiEEYEELEERYDFLSEQREDLEEARETLE 815
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
405-793 |
2.69e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 405 QRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEaqirkLRAQIREAEEEKKGLI 484
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 485 TKLQSEENKVESIKRDKTATEKLLQEtIEKHQAELTSQKDYYSNALAaakeaqalaeertnnEARSELENRLKEAGERES 564
Cdd:COG4717 146 ERLEELEERLEELRELEEELEELEAE-LAELQEELEELLEQLSLATE---------------EELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 565 MLVQALEELRQTLSKKEQQ-AVYREDMFRGEIEDLQRRYQVKSRCFVVSMHISFFGYRLLASERRCEELIT--------- 634
Cdd:COG4717 210 ELEEELEEAQEELEELEEElEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFlvlgllall 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 635 --------QVPESTRPLLRQIEAMQETSYRTAEAWAAV----ERTLNSRLQEAESKAATAEERERSVNERLSQtlSRINV 702
Cdd:COG4717 290 flllarekASLGKEAEELQALPALEELEEEELEELLAAlglpPDLSPEELLELLDRIEELQELLREAEELEEE--LQLEE 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 703 LEAQLSCL--------------RAEQGQLSKSLEKERQRAAENRQEY------LAAKEEADTLEGRANQLEVEIRELRRK 762
Cdd:COG4717 368 LEQEIAALlaeagvedeeelraALEQAEEYQELKEELEELEEQLEELlgeleeLLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430
....*....|....*....|....*....|.
gi 334184028 763 HKQELQEVLLHNELIQKDLEREKASRLDLER 793
Cdd:COG4717 448 LEELREELAELEAELEQLEEDGELAELLQEL 478
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
320-920 |
4.45e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 4.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 320 LNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAArqaqakadeiAKLMHENEQLKSvtedLKRKSNEAEVESL 399
Cdd:pfam15921 160 LKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEAS----------GKKIYEHDSMST----MHFRSLGSAISKI 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 400 REEYHQRVATLERKVYALTKERDTLRREQNKKSDAaaLLKEKDEIINQVMAEGE----ELSKKQAAQEAQIRKLRAQIRE 475
Cdd:pfam15921 226 LRELDTEISYLKGRIFPVEDQLEALKSESQNKIEL--LLQQHQDRIEQLISEHEveitGLTEKASSARSQANSIQSQLEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 476 AEEEKKGLITKLQSEENKVESikrdktatekllqeTIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNnEARSELENR 555
Cdd:pfam15921 304 IQEQARNQNSMYMRQLSDLES--------------TVSQLRSELREAKRMYEDKIEELEKQLVLANSELT-EARTERDQF 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 556 LKEAGERESMLVQALEELRQ-----TLSKKEQQAVYREDMFRGEIEDLQRRyQVKSRcfvvSMHISFFGYRLLASERRCE 630
Cdd:pfam15921 369 SQESGNLDDQLQKLLADLHKrekelSLEKEQNKRLWDRDTGNSITIDHLRR-ELDDR----NMEVQRLEALLKAMKSECQ 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 631 ELITQ----------VPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSV---NERLSQTL 697
Cdd:pfam15921 444 GQMERqmaaiqgkneSLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIeatNAEITKLR 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 698 SRINV-----------------LEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRElR 760
Cdd:pfam15921 524 SRVDLklqelqhlknegdhlrnVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIND-R 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 761 RKHKQELQEVLLHNELIQKDLErEKASRLDLERTARINssAVSEQLPIARQNSAFENGSLPRKLSSASSLGSMEESYFLQ 840
Cdd:pfam15921 603 RLELQEFKILKDKKDAKIRELE-ARVSDLELEKVKLVN--AGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVL 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 841 ASldssdKFSEKRSMPEATMSPYYMKsitpsayeatLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEAD 920
Cdd:pfam15921 680 KR-----NFRNKSEEMETTTNKLKMQ----------LKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQID 744
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
390-760 |
5.63e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 5.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 390 KSNEAEVESLREeyhqRVATLERKVYALTKERDTLRREQNKKSDAaalLKEKDEIINQVMAEGEELSKKQAAQEAQIRKL 469
Cdd:TIGR02169 670 RSEPAELQRLRE----RLEGLKRELSSLQSELRRIENRLDELSQE---LSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 470 RAQIREAEEEKKGLITKLQSEENKVESikrdktateklLQETIEKHQAELTSQKDYYSnalaAAKEAQALAEERTNNEAR 549
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEE-----------LEEDLHKLEEALNDLEARLS----HSRIPEIQAELSKLEEEV 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 550 SELENRLKEAG---ERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQVKSRcfvvsmhisffgyRLLASE 626
Cdd:TIGR02169 808 SRIEARLREIEqklNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE-------------ELEELE 874
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 627 RRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERtLNSRLQEAESKAATAEERERSVnERLSQTLSRINVLEAQ 706
Cdd:TIGR02169 875 AALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK-KRKRLSELKAKLEALEEELSEI-EDPKGEDEEIPEEELS 952
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 334184028 707 LSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELR 760
Cdd:TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
549-811 |
7.40e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 7.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 549 RSELENRLKEAGERESMLVQALEELRQTLSKKEQQAV----YREdmFRGEIEDLQRRYQVKSRCFVVSmHISFFGYRLLA 624
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELERQLKSLERQAEkaerYKE--LKAELRELELALLVLRLEELRE-ELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 625 SERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVE------RTLNSRLQEAESKAATAEERERSVNERLSQTLS 698
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYalaneiSRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 699 RINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAakeeadtLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQ 778
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEE-------LESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
|
250 260 270
....*....|....*....|....*....|...
gi 334184028 779 KDLEREKASRLDLERTARINSSAVSEQLPIARQ 811
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
341-514 |
2.05e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKR-----KSNEAEVESLREEYHQRVATLERKV- 414
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKkisslKEKIEKLESEKKEKESKISDLEDELn 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 415 --------YALTKERDTLRREQNK-KSDAAALLK---EKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKG 482
Cdd:TIGR04523 549 kddfelkkENLEKEIDEKNKEIEElKQTQKSLKKkqeEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
170 180 190
....*....|....*....|....*....|..
gi 334184028 483 LITKLQSEENKVESIKRDKTATEKLLQETIEK 514
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
322-605 |
2.10e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 322 ESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAArQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEA------- 394
Cdd:PTZ00121 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA-EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAkkaeekk 1546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 395 EVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIR 474
Cdd:PTZ00121 1547 KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 475 EAEEEKKGLITKLQSEENKVESIKRDKTATEK-LLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELE 553
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEnKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 334184028 554 NRLKEAGEresmlVQALEELRQtlsKKEQQAVYREDMFRGEIEDLQRRYQVK 605
Cdd:PTZ00121 1707 LKKKEAEE-----KKKAEELKK---AEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
666-941 |
2.48e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 666 RTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTL 745
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 746 EGRANQLEVEIRELRRKHKQElqevllhneliQKDLEREKASRLDLERtariNSSAVSEQLPIARQNSAFENGSLPRKLS 825
Cdd:TIGR02169 370 RAELEEVDKEFAETRDELKDY-----------REKLEKLKREINELKR----ELDRLQEELQRLSEELADLNAAIAGIEA 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 826 SASSLGSMEESyfLQASLDSSD-KFSEKRSMPEATMSPYYMKSITPSAYEATLRQKEGELASYMTRL-ASMESIRDSLAE 903
Cdd:TIGR02169 435 KINELEEEKED--KALEIKKQEwKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQArASEERVRGGRAV 512
|
250 260 270
....*....|....*....|....*....|....*...
gi 334184028 904 ELVkmtaecekLRGEADRVPGIKAELEALRQRHAAALE 941
Cdd:TIGR02169 513 EEV--------LKASIQGVHGTVAQLGSVGERYATAIE 542
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
340-505 |
3.52e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 3.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 340 LELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAE-----VESLREEYHQRVATL--ER 412
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEleieeVEARIKKYEEQLGNVrnNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 413 KVYALTKERDTLRREQnkksdaaallKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEEN 492
Cdd:COG1579 90 EYEALQKEIESLKRRI----------SDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELE 159
|
170
....*....|...
gi 334184028 493 KVESiKRDKTATE 505
Cdd:COG1579 160 ELEA-EREELAAK 171
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
298-935 |
3.76e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 3.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 298 EISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHEN 377
Cdd:TIGR02169 259 EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 378 EQLKSVTEDLK--RKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEEL 455
Cdd:TIGR02169 339 EELEREIEEERkrRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 456 SKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEK---LLQETIEKHQAELTSQKDYYSnaLAA 532
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQelyDLKEEYDRVEKELSKLQRELA--EAE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 533 AKEAQALAEERTNNEARSELENRLK-------EAGERESMLVQALEelrqTLSKKEQQAVYREDMFRGE--IEDLQRR-- 601
Cdd:TIGR02169 497 AQARASEERVRGGRAVEEVLKASIQgvhgtvaQLGSVGERYATAIE----VAAGNRLNNVVVEDDAVAKeaIELLKRRka 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 602 ----------YQVKSRCFVVSMHISFFGY--RLLASERRCEE---------LITQVPESTRPLLRQIE------------ 648
Cdd:TIGR02169 573 gratflplnkMRDERRDLSILSEDGVIGFavDLVEFDPKYEPafkyvfgdtLVVEDIEAARRLMGKYRmvtlegelfeks 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 649 --------AMQETSYRTAEAWAAVERtLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKS 720
Cdd:TIGR02169 653 gamtggsrAPRGGILFSRSEPAELQR-LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 721 LEKERQRAAENR-------QEYLAAKEEADTLEGRANQLEVEIRELRRKhKQELQEVLLHNELIQKDLEREKasrldLER 793
Cdd:TIGR02169 732 EEKLKERLEELEedlssleQEIENVKSELKELEARIEELEEDLHKLEEA-LNDLEARLSHSRIPEIQAELSK-----LEE 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 794 TARINSSAVSEqlpiarqnsafengsLPRKLSSASSLGSMEESYfLQASLDSSDKFSEKRSMPEATMSpyymksitpsAY 873
Cdd:TIGR02169 806 EVSRIEARLRE---------------IEQKLNRLTLEKEYLEKE-IQELQEQRIDLKEQIKSIEKEIE----------NL 859
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334184028 874 EATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRgeaDRVPGIKAELEALRQR 935
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE---RKIEELEAQIEKKRKR 918
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
355-489 |
5.94e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 5.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 355 ALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEvESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDA 434
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELE-AQIRGNGGDRLEQLEREIERLERELEERERRRARLEAL 367
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334184028 435 AALLKEKD--------EIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQS 489
Cdd:COG4913 368 LAALGLPLpasaeefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
386-755 |
6.59e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 6.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 386 DLKRKSNEAEVESLREEYHQRVATLERKvyaltkeRDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQE-- 463
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEEL-------QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQke 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 464 -----AQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQEtIEKHQAELTSQKDyysnalaaakeaqa 538
Cdd:TIGR02168 290 lyalaNEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE-LEEKLEELKEELE-------------- 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 539 laeertnnEARSELENRLKEAGERESmLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQVKSRcfvvsmhisff 618
Cdd:TIGR02168 355 --------SLEAELEELEAELEELES-RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED----------- 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 619 gyrllASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLS 698
Cdd:TIGR02168 415 -----RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334184028 699 RINVLEAQLSCLRAEQGQLSKSLEKERQRAA---------ENRQEYLAAKEEAdtLEGRANQLEVE 755
Cdd:TIGR02168 490 RLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlseliSVDEGYEAAIEAA--LGGRLQAVVVE 553
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
346-602 |
6.65e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 6.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 346 KKEIKMLENALqgAARQAQAKADEIAKLmheNEQLKSVTEDLKRKSNEAEveslreEYHQRVATLERKVYALTKERDTLR 425
Cdd:TIGR02168 219 KAELRELELAL--LVLRLEELREELEEL---QEELKEAEEELEELTAELQ------ELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 426 REQNKKSDAAALLKEKDEIINQvmaEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATE 505
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRE---RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 506 KLLQEtIEKHQAELTSQKDYYSNALAAAKEAQALaeertNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAV 585
Cdd:TIGR02168 365 AELEE-LESRLEELEEQLETLRSKVAQLELQIAS-----LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
|
250
....*....|....*...
gi 334184028 586 YRE-DMFRGEIEDLQRRY 602
Cdd:TIGR02168 439 QAElEELEEELEELQEEL 456
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
372-786 |
7.33e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.64 E-value: 7.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 372 KLMHENEQLKSVTEDLKRKSN--EAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVM 449
Cdd:pfam05483 216 KLKEDHEKIQHLEEEYKKEINdkEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLT 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 450 AEGEELS-------KKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQ 522
Cdd:pfam05483 296 KELEDIKmslqrsmSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKN 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 523 KDYYS--NALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQ--ALEELRQTLSKKEQQAVY------------ 586
Cdd:pfam05483 376 EDQLKiiTMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEkkQFEKIAEELKGKEQELIFllqarekeihdl 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 587 ---------REDMFRGEIEDLQ--------RRYQVKSRCFVVSMH---ISFFGYRLLASERRCEELITQVPESTRPLLRQ 646
Cdd:pfam05483 456 eiqltaiktSEEHYLKEVEDLKtelekeklKNIELTAHCDKLLLEnkeLTQEASDMTLELKKHQEDIINCKKQEERMLKQ 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 647 IEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQ 726
Cdd:pfam05483 536 IENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQ 615
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184028 727 RAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRK-------HKQELQEVLLHNELIQKDLEREKA 786
Cdd:pfam05483 616 ENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKfeeiidnYQKEIEDKKISEEKLLEEVEKAKA 682
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
333-518 |
8.06e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 8.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 333 SDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLmheNEQLKSVTEDLKRKsnEAEVESLREEYHQRVATLER 412
Cdd:COG3883 23 KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEAL---QAEIDKLQAEIAEA--EAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 413 KVYALTKER---------DTLRREQNKKsdaaALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGL 483
Cdd:COG3883 98 SGGSVSYLDvllgsesfsDFLDRLSALS----KIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190
....*....|....*....|....*....|....*
gi 334184028 484 ITKLQSEENKVESIKRDKTATEKLLQETIEKHQAE 518
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
552-772 |
8.86e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 8.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 552 LENRLKEAGERESMLVQALEELRQTLSKKEQqavyredmfrgEIEDLQRRYQVksrcFVVSMHISFFGYRLLASERRCEE 631
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEA-----------ALEEFRQKNGL----VDLSEEAKLLLQQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 632 LITQVpESTRPLLRQIEAMQETSYRTAEAWAA--VERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLsc 709
Cdd:COG3206 231 ARAEL-AEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL-- 307
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334184028 710 lRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKH--KQELQEVLL 772
Cdd:COG3206 308 -QQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVevARELYESLL 371
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
644-814 |
1.35e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 644 LRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK 723
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 724 --------------------ERQRAAENRQEYLAA-----KEEADTLEGRANQLEVEIRELRRKhKQELQEVLLHNELIQ 778
Cdd:COG4942 109 llralyrlgrqpplalllspEDFLDAVRRLQYLKYlaparREQAEELRADLAELAALRAELEAE-RAELEALLAELEEER 187
|
170 180 190
....*....|....*....|....*....|....*.
gi 334184028 779 KDLEREKASRLDLERTARINSSAVSEQLPIARQNSA 814
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
357-519 |
1.36e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 357 QGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAA 436
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 437 LLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDkTATEKLLQETIEKHQ 516
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA-LLEERFAAALGDAVE 764
|
...
gi 334184028 517 AEL 519
Cdd:COG4913 765 REL 767
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
341-806 |
1.38e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 341 ELEKTKKEIKMLEnALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEY---HQRVATLERKVYAL 417
Cdd:COG4913 243 ALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELarlEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 418 TKERDTLRRE-QNKKSDAAALLKEKdeiINQVMAEGEELSKKQAAQEAQIRKL-------RAQIREAEEEKKGLITKLQS 489
Cdd:COG4913 322 REELDELEAQiRGNGGDRLEQLERE---IERLERELEERERRRARLEALLAALglplpasAEEFAALRAEAAALLEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 490 EENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKeaqalaeertnnEARSELENRLKE-------AGE- 561
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL------------ALRDALAEALGLdeaelpfVGEl 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 562 ---------------------RESMLV------QALEELRQTLSK------KEQQAVYREDMFRGEIEDLQRRYQVKS-- 606
Cdd:COG4913 467 ievrpeeerwrgaiervlggfALTLLVppehyaAALRWVNRLHLRgrlvyeRVRTGLPDPERPRLDPDSLAGKLDFKPhp 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 607 -RCFVVSMHISFFGYRLLASE---RRCEELIT---QVPES-------TRPLLRQIEAMQETSYRTAEAWAAVERTLNSRL 672
Cdd:COG4913 547 fRAWLEAELGRRFDYVCVDSPeelRRHPRAITragQVKGNgtrhekdDRRRIRSRYVLGFDNRAKLAALEAELAELEEEL 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 673 QEAESKAATAEERERSVNERLSQTLSRINVLEAQLSclraeqgqlSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQL 752
Cdd:COG4913 627 AEAEERLEALEAELDALQERREALQRLAEYSWDEID---------VASAEREIAELEAELERLDASSDDLAALEEQLEEL 697
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 334184028 753 EVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQL 806
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL 751
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
671-795 |
1.41e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 671 RLQEAESKAATAEERE------RSVNERLSQTLSRINVLEAQLSCLRAEQGQlsKSLEKERQRAAENRQEYLAAKEEADT 744
Cdd:COG4913 236 DLERAHEALEDAREQIellepiRELAERYAAARERLAELEYLRAALRLWFAQ--RRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 334184028 745 LEGRANQLEVEIRELRRKHKQELQEVLlhnELIQKDLEREKASRLDLERTA 795
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGGDRL---EQLEREIERLERELEERERRR 361
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
463-767 |
1.85e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 463 EAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLqetiekHQAELTSQKDYysnalaaakeaqalaee 542
Cdd:COG3096 835 EAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLL------PQANLLADETL----------------- 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 543 rtnNEARSELENRLKEAGERESMLVQ------ALEELRQTL-SKKEQQAVYREDMFRGEiedlQRRYQVKSRCFVVSMHI 615
Cdd:COG3096 892 ---ADRLEELREELDAAQEAQAFIQQhgkalaQLEPLVAVLqSDPEQFEQLQADYLQAK----EQQRRLKQQIFALSEVV 964
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 616 S---FFGY-----RLLASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAwAAVERTLNSR-------LQEAESK-- 678
Cdd:COG3096 965 QrrpHFSYedavgLLGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQY-NQVLASLKSSrdakqqtLQELEQEle 1043
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 679 ------AATAEERERS----VNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGR 748
Cdd:COG3096 1044 elgvqaDAEAEERARIrrdeLHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAGWCAVLRL 1123
|
330
....*....|....*....
gi 334184028 749 ANQLEVEirelRRKHKQEL 767
Cdd:COG3096 1124 ARDNDVE----RRLHRREL 1138
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
268-498 |
2.47e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.28 E-value: 2.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 268 IESPVAHPSLIFESDGSPYESS---IPKRSSSDEISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDS--ADVILEL 342
Cdd:PLN02939 58 QRSSNSKLQSNTDENGQLENTSlrtVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFqlEDLVGMI 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 343 EKTKKEIKMLEnalqgaarQAQAKA-DEIAKLMHENEQLK-------------------SVTEDLKRKSNEAEVESLREE 402
Cdd:PLN02939 138 QNAEKNILLLN--------QARLQAlEDLEKILTEKEALQgkinilemrlsetdariklAAQEKIHVEILEEQLEKLRNE 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 403 YHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEkdEIINqvMAEGEE----LSKKQAAQEAQIRKLRAQIREAEE 478
Cdd:PLN02939 210 LLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKA--ELIE--VAETEErvfkLEKERSLLDASLRELESKFIVAQE 285
|
250 260
....*....|....*....|.
gi 334184028 479 EKKGLIT-KLQSEENKVESIK 498
Cdd:PLN02939 286 DVSKLSPlQYDCWWEKVENLQ 306
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
341-696 |
6.60e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 6.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLksvtedlkrksnEAEVESLREeyhqRVATLERKVYALTKE 420
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL------------EQEEEKLKE----RLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 421 RDTLRREQnkkSDAAALLKEKDEIINQVMAEGEELSKKQAaqEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRD 500
Cdd:TIGR02169 753 IENVKSEL---KELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 501 KTATEKLLQEtIEKHQAELTSQKDyysnaLAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKK 580
Cdd:TIGR02169 828 KEYLEKEIQE-LQEQRIDLKEQIK-----SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 581 EQqavyREDMFRGEIEDL-QRRYQVKSRCFVVSMHISFFG--YRLLASERRCEELITQVPESTRPLLRQIEAMQETSYRT 657
Cdd:TIGR02169 902 ER----KIEELEAQIEKKrKRLSELKAKLEALEEELSEIEdpKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLA 977
|
330 340 350
....*....|....*....|....*....|....*....
gi 334184028 658 AEAWAAVERTLNsrlqEAESKAATAEERERSVNERLSQT 696
Cdd:TIGR02169 978 IQEYEEVLKRLD----ELKEKRAKLEEERKAILERIEEY 1012
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
339-589 |
6.62e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 6.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 339 ILELEKTKKEIKMLENALQgaarqaQAKAdEIAKLMHENEQ--LKSVTEDLKRKSNE-AEVESLREEYHQRVATLERKVY 415
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLN------QLKS-EISDLNNQKEQdwNKELKSELKNQEKKlEEIQNQISQNNKIISQLNEQIS 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 416 ALTKERDTLRREQNKKSDAaalLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGL---ITKLQSEEN 492
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRE---LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKdeqIKKLQQEKE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 493 KVE------------------SIKRDKTATEKL---LQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTN-----N 546
Cdd:TIGR04523 423 LLEkeierlketiiknnseikDLTNQDSVKELIiknLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKelkklN 502
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 334184028 547 EARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYRED 589
Cdd:TIGR04523 503 EEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED 545
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
440-762 |
8.54e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 440 EKDEIINQVMAEGEELSKKQ---AAQEAQIRKLRAQIREAEEEKKGLITKLQSEE---NKVESIKRdktateklLQETIE 513
Cdd:COG3096 279 ERRELSERALELRRELFGARrqlAEEQYRLVEMARELEELSARESDLEQDYQAASdhlNLVQTALR--------QQEKIE 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 514 KHQAELTSQKDyysNALAAAKEAQALAEERTNNEARSEL-ENRLKEAGERESMLVQALEELrQTLSKKEQQAVYR----- 587
Cdd:COG3096 351 RYQEDLEELTE---RLEEQEEVVEEAAEQLAEAEARLEAaEEEVDSLKSQLADYQQALDVQ-QTRAIQYQQAVQAlekar 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 588 ----------------EDMFRGEIEDL-QRRYQVKSRCFVVSMHISFF--GYRLLaserrcEELITQVPEST-----RPL 643
Cdd:COG3096 427 alcglpdltpenaedyLAAFRAKEQQAtEEVLELEQKLSVADAARRQFekAYELV------CKIAGEVERSQawqtaREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 644 LRQieamqetsYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNE---RLSQTLSRINVLEAQLSCLRAEQGQLSKS 720
Cdd:COG3096 501 LRR--------YRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEfcqRIGQQLDAAEELEELLAELEAQLEELEEQ 572
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 334184028 721 LEKERQRAAENRQEylaakeeadtlegrANQLEVEIRELRRK 762
Cdd:COG3096 573 AAEAVEQRSELRQQ--------------LEQLRARIKELAAR 600
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
336-568 |
8.63e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 336 ADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEV--ESLR--EEYHQRVATLE 411
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIkaEELKkaEEEKKKVEQLK 1639
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 412 RKVYALTKERDTLRREQNKKSDAAALLKEKDEiinQVMAEGEELSK----KQAAQEAQIRKLRAQIREAEEEKKGLITKL 487
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAE---EDKKKAEEAKKaeedEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 488 QSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLV 567
Cdd:PTZ00121 1717 KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
.
gi 334184028 568 Q 568
Cdd:PTZ00121 1797 D 1797
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-484 |
8.73e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 8.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 340 LELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEY---HQRVATLERKVYA 416
Cdd:PRK03918 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYlelSRELAGLRAELEE 684
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184028 417 LTKERDTLRREQNK-KSDAAALLKEKDEI--INQVMAEGEELSKKqaaqeaqIRKLRAQIREAEEEKKGLI 484
Cdd:PRK03918 685 LEKRREEIKKTLEKlKEELEEREKAKKELekLEKALERVEELREK-------VKKYKALLKERALSKVGEI 748
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
385-922 |
9.01e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 9.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 385 EDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDA----------AALLKEKDEIINQVMAEGEE 454
Cdd:PTZ00121 1203 EAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEeirkfeearmAHFARRQAAIKAEEARKADE 1282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 455 LSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAK 534
Cdd:PTZ00121 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 535 EAQALAEERTNNEARSELENRLKEAGERESM--LVQALEELRQTLS--KKEQQAVYREDMFRGEIEDLQRRYQVKSRcfV 610
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKAdeAKKKAEEDKKKADelKKAAAAKKKADEAKKKAEEKKKADEAKKK--A 1440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 611 VSMHISFFGYRLLASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVN 690
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 691 ERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK-ERQRAAENRQEylaaKEEADTLEGRANQLEVEIRELRRKHKQELQE 769
Cdd:PTZ00121 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADELKKaEELKKAEEKKK----AEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 770 VLLHNELIQKdlerEKASRLDLERTARINSSAVSEQLPIARQNSAFENGSLPRKlSSASSLGSMEESYFLQASLDSSDKF 849
Cdd:PTZ00121 1597 VMKLYEEEKK----MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK-KKAEELKKAEEENKIKAAEEAKKAE 1671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 850 SEKRSMPEATMSPYYMK----SITPSAYEA----TLRQKEGELASYMTRLASMESIRDSLAEELvKMTAECEKLRGEADR 921
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKkaaeALKKEAEEAkkaeELKKKEAEEKKKAEELKKAEEENKIKAEEA-KKEAEEDKKKAEEAK 1750
|
.
gi 334184028 922 V 922
Cdd:PTZ00121 1751 K 1751
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
336-555 |
9.01e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 9.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 336 ADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHEN----EQLKSVTEDLKRKSNEA-----EVESLREEYHQR 406
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElkkaEEEKKKVEQLKKKEAEEkkkaeELKKAEEENKIK 1662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 407 VATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVmaegEELSKKqaaqEAQIRKLRAQIREAEEEKKglitk 486
Cdd:PTZ00121 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA----EELKKK----EAEEKKKAEELKKAEEENK----- 1729
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334184028 487 LQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENR 555
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
401-601 |
1.12e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 401 EEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALlkekDEIINqvMAEGEELSKKQAAQEAQIRKLRAQIREAEEEK 480
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAAARERLAEL----EYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 481 KGLITKLQSEENKVESIKR----DKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKE--AQALAEERTNNEARSELEN 554
Cdd:COG4913 312 ERLEARLDALREELDELEAqirgNGGDRLEQLEREIERLERELEERERRRARLEALLAAlgLPLPASAEEFAALRAEAAA 391
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 334184028 555 RLKEAGERESMLVQALEELRQTLSKKEQQavyrEDMFRGEIEDLQRR 601
Cdd:COG4913 392 LLEALEEELEALEEALAEAEAALRDLRRE----LRELEAEIASLERR 434
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
388-519 |
1.28e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 388 KRKSNEAEVESLREEyhqrVATLERKVYALTKERDTLRREQNKK----SDAAALLKEKDEIINQVMA--EGEELSKKQAA 461
Cdd:COG1579 25 RLKELPAELAELEDE----LAALEARLEAAKTELEDLEKEIKRLeleiEEVEARIKKYEEQLGNVRNnkEYEALQKEIES 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 334184028 462 QEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAEL 519
Cdd:COG1579 101 LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
679-771 |
2.05e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 679 AATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRE 758
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90
....*....|....*.
gi 334184028 759 LRRK---HKQELQEVL 771
Cdd:COG4942 95 LRAEleaQKEELAELL 110
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
311-527 |
2.43e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 311 IDSRLDTSELN-ESQRSSSATNVSDSADVILELEKTKKEIKMLENALQgaarqaqakaDEIAKLmheNEQLKSVTEDLKR 389
Cdd:PHA02562 193 IQQQIKTYNKNiEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT----------DELLNL---VMDIEDPSAALNK 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 390 KSNEAEVESLREEYHQRVATLERK-------VYALTKERDTLRREQNKKSDAAALLKEKDEIINQV---MAEGEELSKKQ 459
Cdd:PHA02562 260 LNTAAAKIKSKIEQFQKVIKMYEKggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELeeiMDEFNEQSKKL 339
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334184028 460 AAQEAQIRKLRAQIREAEEEKKglitKLQSE-ENKVESIKRDKTATEKL---LQETIEKhQAELTSQKDYYS 527
Cdd:PHA02562 340 LELKNKISTNKQSLITLVDKAK----KVKAAiEELQAEFVDNAEELAKLqdeLDKIVKT-KSELVKEKYHRG 406
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
376-601 |
3.02e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 376 ENEQLKSVTEDLKRKSNEaevesLREEYHQRVATLERkvyaltkERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEEL 455
Cdd:pfam02463 174 ALKKLIEETENLAELIID-----LEELKLQELKLKEQ-------AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 456 SKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKE 535
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 334184028 536 AQALAEERTNN--EARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRR 601
Cdd:pfam02463 322 EKKKAEKELKKekEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
341-792 |
3.28e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKrksNEAEVESLREEyhqrvaTLERKVYALTKE 420
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLL---AEAGLDDADAE------AVEARREELEDR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 421 RDTLRRE-QNKKSDAAALLKEKD---EIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVES 496
Cdd:PRK02224 323 DEELRDRlEECRVAAQAHNEEAEslrEDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 497 IKRDKtatekllqETIEKHQAELTSQKDyysnaLAAAKEAQALAEERTNNEARSELEnRLKEAGE--------RESMLVQ 568
Cdd:PRK02224 403 APVDL--------GNAEDFLEELREERD-----ELREREAELEATLRTARERVEEAE-ALLEAGKcpecgqpvEGSPHVE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 569 ALEELRQtlsKKEQQAVYREDMfRGEIEDLQRRYQVKSrcfvvsmhisffgyRLLASERRCEELITQVPESTRPLLRQIE 648
Cdd:PRK02224 469 TIEEDRE---RVEELEAELEDL-EEEVEEVEERLERAE--------------DLVEAEDRIERLEERREDLEELIAERRE 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 649 AMQETSYRTAEAWAAVERtLNSRLQEAESKAATAEERERSVNER----------LSQTLSRINVLEAQLSCLRAEQGQLS 718
Cdd:PRK02224 531 TIEEKRERAEELRERAAE-LEAEAEEKREAAAEAEEEAEEAREEvaelnsklaeLKERIESLERIRTLLAAIADAEDEIE 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 719 KSLEKERQRAAEN--RQEYLAAKEEadtlegRANQLEVEIRELR----RKHKQELQEVLlhnELIQKDLEREKASRLDLE 792
Cdd:PRK02224 610 RLREKREALAELNdeRRERLAEKRE------RKRELEAEFDEARieeaREDKERAEEYL---EQVEEKLDELREERDDLQ 680
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
422-583 |
3.42e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 422 DTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDK 501
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 502 TATEKLLQETIEKHQaeLTSQKDYYS---NALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLS 578
Cdd:COG4942 100 EAQKEELAELLRALY--RLGRQPPLAlllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
....*
gi 334184028 579 KKEQQ 583
Cdd:COG4942 178 ALLAE 182
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
310-604 |
4.41e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 310 EIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKAD-EIAKLMHENEQLKSVTEDLK 388
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaEEAKKAEEDKNMALRKAEEA 1586
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 389 RKSNEA---EVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQV--MAEGEELSKKQAAQE 463
Cdd:PTZ00121 1587 KKAEEArieEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAeeLKKAEEENKIKAAEE 1666
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 464 AqiRKLRAQIREAEEEKKglitklQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEER 543
Cdd:PTZ00121 1667 A--KKAEEDKKKAEEAKK------AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184028 544 TNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMfrgEIEDLQRRYQV 604
Cdd:PTZ00121 1739 AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEEL---DEEDEKRRMEV 1796
|
|
| Seryl_tRNA_N |
pfam02403 |
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA ... |
388-476 |
4.94e-03 |
|
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase.
Pssm-ID: 426757 [Multi-domain] Cd Length: 108 Bit Score: 37.57 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 388 KRKSNEAEVESLREeyhqrvatLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIR 467
Cdd:pfam02403 20 KRGVDVLDVDELLE--------LDEKRRELQVELEELQAERNELSKEIGQAKKKKEDADALIAEVKELKDELKALEAELK 91
|
....*....
gi 334184028 468 KLRAQIREA 476
Cdd:pfam02403 92 ELEAELDKL 100
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
300-479 |
5.17e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 40.81 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 300 SERIVDFVSReIDSRLDTSELNESQRSSSATNVSDSADVI----LELEKTKKEIKMLENALQGAARQAQAKADEIAKlmh 375
Cdd:pfam13166 278 DDEFTEFQNR-LQKLIEKVESAISSLLAQLPAVSDLASLLsafeLDVEDIESEAEVLNSQLDGLRRALEAKRKDPFK--- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 376 eNEQLKSVTEDLKR-KSNEAEVESLREEYHQRVATLERKVyalTKERDTLRREQNKKSDAaaLLKEKDEIINQVMAEGEE 454
Cdd:pfam13166 354 -SIELDSVDAKIESiNDLVASINELIAKHNEITDNFEEEK---NKAKKKLRLHLVEEFKS--EIDEYKDKYAGLEKAINS 427
|
170 180
....*....|....*....|....*
gi 334184028 455 LSKKQAAQEAQIRKLRAQIREAEEE 479
Cdd:pfam13166 428 LEKEIKNLEAEIKKLREEIKELEAQ 452
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
572-770 |
5.19e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.81 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 572 ELRQTLSKKEQQ-AVYREDMFRGEIEdlQRRYQVKSRCFVVSmhisffgyRLLASE----RRCEELITQVP---ESTRPL 643
Cdd:PRK10929 83 ELRQQLNNERDEpRSVPPNMSTDALE--QEILQVSSQLLEKS--------RQAQQEqdraREISDSLSQLPqqqTEARRQ 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 644 LRQIEAMQETSYRTAEAWAAVERTLnsrLQ-EAESKAATAEERER---SVNERlsQTLSR--INVLEAQLSCLRAEQGQL 717
Cdd:PRK10929 153 LNEIERRLQTLGTPNTPLAQAQLTA---LQaESAALKALVDELELaqlSANNR--QELARlrSELAKKRSQQLDAYLQAL 227
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 334184028 718 SKSLEKERQRAAE---NRQEYLaAKEEADTLEGRANQLEVEiRELRRKHKQELQEV 770
Cdd:PRK10929 228 RNQLNSQRQREAEralESTELL-AEQSGDLPKSIVAQFKIN-RELSQALNQQAQRM 281
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
388-603 |
5.41e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 388 KRKSNEAEVESLREEyhqrvatlerkvyaLTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIR 467
Cdd:COG4942 21 AAAEAEAELEQLQQE--------------IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 468 KLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAA-----AKEAQALAEE 542
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQaeelrADLAELAALR 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184028 543 RTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQavyrEDMFRGEIEDLQRRYQ 603
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKE----LAELAAELAELQQEAE 223
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
304-603 |
6.90e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 304 VDFVSR-EIDSRLDT---SELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLmhENEQ 379
Cdd:PRK11281 33 GDLPTEaDVQAQLDAlnkQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL--KDDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 380 LKSVTEDLKRKSNeAEVESLREEYHQRVATLERKVYALTKERDTLR----REQNKKSDAAALLKEKDEIINQVMAEGEEL 455
Cdd:PRK11281 111 DEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQtqpeRAQAALYANSQRLQQIRNLLKGGKVGGKAL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 456 SKKQAAQ-EAQIRKLRAQIREAEEEKKGlITKLQSEENKvesiKRD-KTATEKLLQETIEKHQAELTSQKDYYSNALAAA 533
Cdd:PRK11281 190 RPSQRVLlQAEQALLNAQNDLQRKSLEG-NTQLQDLLQK----QRDyLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 534 KEAQALAEERTNN-------EARSELENRLKEAGERESMLVQ-------ALEELRQT----------------LSK---K 580
Cdd:PRK11281 265 AQSQDEAARIQANplvaqelEINLQLSQRLLKATEKLNTLTQqnlrvknWLDRLTQSernikeqisvlkgsllLSRilyQ 344
|
330 340
....*....|....*....|....*.
gi 334184028 581 EQQAVYREDMFRG---EIEDLqRRYQ 603
Cdd:PRK11281 345 QQQALPSADLIEGladRIADL-RLEQ 369
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
143-517 |
7.06e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 40.13 E-value: 7.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 143 DPKDDEPQSQILLEESSEYSLQTPESSGYKTSLQPNEKLEMTASQDSQPEQPKSEAEESQPEDSEAKEVTVENK------ 216
Cdd:pfam09731 81 EPKEEKKQVKIPRQSGVSSEVAEEEKEATKDAAEAKAQLPKSEQEKEKALEEVLKEAISKAESATAVAKEAKDDaiqavk 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 217 ---DTVHSPVLDGQHKITYMDETTNE-QEILGENLEGRTSSKNFEVSPDINHVNRIESPVAHPSLIFE-SDGSPYESSIP 291
Cdd:pfam09731 161 ahtDSLKEASDTAEISREKATDSALQkAEALAEKLKEVINLAKQSEEEAAPPLLDAAPETPPKLPEHLdNVEEKVEKAQS 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 292 KRSSSDEISERIVDfvSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIA 371
Cdd:pfam09731 241 LAKLVDQYKELVAS--ERIVFQQELVSIFPDIIPVLKEDNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIERAL 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 372 KLMHENEqlksvtEDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQvmae 451
Cdd:pfam09731 319 EKQKEEL------DKLAEELSARLEEVRAADEAQLRLEFEREREEIRESYEEKLRTELERQAEAHEEHLKDVLVEQ---- 388
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 334184028 452 geelskkqaAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRdktATEKLLQETIEKHQA 517
Cdd:pfam09731 389 ---------EIELQREFLQDIKEKVEEERAGRLLKLNELLANLKGLEK---ATSSHSEVEDENRKA 442
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
21-255 |
8.06e-03 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 40.16 E-value: 8.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 21 NKFQESVKNIEKNFDnalgfDDKSDSAAEDAASSMWPPAVDTKSlfdpvmsfmgNTSDEKPDTLEDSVRTENPSQIEQKE 100
Cdd:PRK08581 47 NDDETSKDTSSKDTD-----KADNNNTSNQDNNDKKFSTIDSST----------SDSNNIIDFIYKNLPQTNINQLLTKN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 101 EEAGSVKLATEQAVSVEANKETNVRREADQADNPEVTETVVLDPKDDEPQSqillEESSEYSLQTPESSGYKTSLQPNEK 180
Cdd:PRK08581 112 KYDDNYSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTD----TQSSKQDKADNQKAPSSNNTKPSTS 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334184028 181 LEmtASQDSQPEQPKSEAEESQPEDSEAKEVTVENKDTVHSPVLDGQHKITYMDETTNEQEILGENLEGRTSSKN 255
Cdd:PRK08581 188 NK--QPNSPKPTQPNQSNSQPASDDTANQKSSSKDNQSMSDSALDSILDQYSEDAKKTQKDYASQSKKDKTETSN 260
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
460-730 |
8.57e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 460 AAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKhqaeltsqkdyysnalaaakeaqal 539
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR------------------------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 540 aeERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKeqqavyredmfrgeIEDLQRRYQVKSRCFVVSMHISFFG 619
Cdd:COG4942 71 --IRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL--------------LRALYRLGRQPPLALLLSPEDFLDA 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 620 YRLLaserrceELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSR 699
Cdd:COG4942 135 VRRL-------QYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKE 207
|
250 260 270
....*....|....*....|....*....|....
gi 334184028 700 INVLEAQLSCLRAEQGQLS---KSLEKERQRAAE 730
Cdd:COG4942 208 LAELAAELAELQQEAEELEaliARLEAEAAAAAE 241
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
445-788 |
8.93e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 39.67 E-value: 8.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 445 INQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLI---TKLQSEENKVESIKRDKTATEKLLQETiEKHQAELTS 521
Cdd:pfam19220 12 LGEMADRLEDLRSLKADFSQLIEPIEAILRELPQAKSRLLeleALLAQERAAYGKLRRELAGLTRRLSAA-EGELEELVA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 522 QKDYYSNALAAAKEAQALA--EERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQ 599
Cdd:pfam19220 91 RLAKLEAALREAEAAKEELriELRDKTAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 600 RRYQVKSRcfvVSMHISFFGYRLLASERRCEELITQVpESTRPLLRQIEA--MQETSYRT---------AEAWAAVERTL 668
Cdd:pfam19220 171 LLEQENRR---LQALSEEQAAELAELTRRLAELETQL-DATRARLRALEGqlAAEQAEREraeaqleeaVEAHRAERASL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184028 669 NSRLQEAESKAATAE--------------ERERSVNERLSQTLSRINVLEAQLSCLRAE-QGQLSKSLEKERQR-AAENR 732
Cdd:pfam19220 247 RMKLEALTARAAATEqllaearnqlrdrdEAIRAAERRLKEASIERDTLERRLAGLEADlERRTQQFQEMQRARaELEER 326
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184028 733 QEYL----AAKEEA-DTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASR 788
Cdd:pfam19220 327 AEMLtkalAAKDAAlERAEERIASLSDRIAELTKRFEVERAALEQANRRLKEELQRERAER 387
|
|
| |
