|
Name |
Accession |
Description |
Interval |
E-value |
| TMF_TATA_bd |
pfam12325 |
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil ... |
855-951 |
4.60e-19 |
|
TATA element modulatory factor 1 TATA binding; This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family.
Pssm-ID: 432481 [Multi-domain] Cd Length: 115 Bit Score: 83.75 E-value: 4.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 855 ATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRVPGIKAELEALRQRHAAALELMGERDEELEELR 934
Cdd:pfam12325 19 STIRRLEGELASLKEELARLEAQRDEARQEIVKLMKENEELKELKKELEELEKELKELEQRYETTLELLGEKSEEVEELK 98
|
90
....*....|....*..
gi 334184030 935 ADIVDLKEMYREQVNML 951
Cdd:pfam12325 99 ADVEDLKEMYREQVQQL 115
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
392-729 |
1.31e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 1.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 392 NEAEVESLREEYHQRVATLER------KVYALTKERDTLRREQ--NKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQE 463
Cdd:COG1196 187 NLERLEDILGELERQLEPLERqaekaeRYRELKEELKELEAELllLKLRELEAELEELEAELEELEAELEELEAELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 464 AQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQEtIEKHQAELTSQKDyysnalaaakeaQALAEER 543
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE-LEERLEELEEELA------------ELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 544 TNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDmfrgEIEDLQRRYQASERRCEELITQvpestrpl 623
Cdd:COG1196 334 ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE----ELEELAEELLEALRAAAELAAQ-------- 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 624 LRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK 703
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
330 340
....*....|....*....|....*.
gi 334184030 704 ERQRAAENRQEYLAAKEEADTLEGRA 729
Cdd:COG1196 482 LLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
339-800 |
4.71e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 4.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 339 ILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLksvtedlkrksnEAEVESLREEYHQRVATLERKVYALT 418
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAEL------------EAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 419 KERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIK 498
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 499 RDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTN-NEARSELENRLKEAGERESMLVQALEELRQTL 577
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERlEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 578 SKKEQQAVYREDmfrgEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAES 657
Cdd:COG1196 452 AELEEEEEALLE----LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 658 KAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK-ERQRAAENRQEYLAAKEEADTLEGRANQLEVEI 736
Cdd:COG1196 528 VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRaTFLPLDKIRARAALAAALARGAIGAAVDLVASD 607
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334184030 737 RELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQNSAFENGSL 800
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
401-817 |
2.98e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 2.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 401 EEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIinqvmaEGEELSKKQAAQEAQIRKLRAQIREAEEEK 480
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY------EGYELLKEKEALERQKEAIERQLASLEEEL 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 481 KGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQkdyysnalaaakEAQALAEERTNNEARSELENRLKEAG 560
Cdd:TIGR02169 254 EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK------------IGELEAEIASLERSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 561 EResmLVQALEELRQTLSKKEQqavyredmFRGEIEDLQRRYQASERRCEELitqvpestrpllrqieamqetsyrtaea 640
Cdd:TIGR02169 322 ER---LAKLEAEIDKLLAEIEE--------LEREIEEERKRRDKLTEEYAEL---------------------------- 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 641 wAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKE 720
Cdd:TIGR02169 363 -KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 721 EADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERtARINSSAVSEQLPIARQNSAFENGSL 800
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE-AEAQARASEERVRGGRAVEEVLKASI 520
|
410
....*....|....*..
gi 334184030 801 PRKLSSASSLGSMEESY 817
Cdd:TIGR02169 521 QGVHGTVAQLGSVGERY 537
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
450-773 |
4.70e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 4.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 450 AEGEELSKKQAAQEAQIRKLRAQIREAEEEkkglitkLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNA 529
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKE-------LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 530 LAAAKEAQALAEERTNNEARSELENRLKEAGERESmlvQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRC 609
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEI---EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 610 EELitqvpestrplLRQIEAMQETSYRTAEAWAaverTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSC 689
Cdd:TIGR02168 827 ESL-----------ERRIAATERRLEDLEEQIE----ELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 690 LRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRE----LRRKHKQELQEVLLHNELIQKDLEREK 765
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNlqerLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
....*...
gi 334184030 766 ASRLDLER 773
Cdd:TIGR02168 972 RRLKRLEN 979
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
341-674 |
1.29e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEveslreeyhQRVATLERKVYALTKE 420
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR---------KDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 421 RDTLRREQNKKSDAAALLKEKDEIINQVMAEGEE----LSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVES 496
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAeieeLEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 497 IKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNN-EARSELENRLKEAGERESMLVQALEELRQ 575
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 576 TLSKKEQQAvyreDMFRGEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEA 655
Cdd:TIGR02168 909 KRSELRREL----EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
330
....*....|....*....
gi 334184030 656 ESKAATAEERERSVNERLS 674
Cdd:TIGR02168 985 GPVNLAAIEEYEELKERYD 1003
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
305-776 |
1.82e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.96 E-value: 1.82e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 305 DFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAK-LMHENEQLKSV 383
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 384 TEDLKRksNEAEVESLREEYHQRVATLERKvyaltkERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQE 463
Cdd:COG1196 315 EERLEE--LEEELAELEEELEELEEELEEL------EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 464 AQIRKLRAQIREAEEEkKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDyysnalAAAKEAQALAEER 543
Cdd:COG1196 387 ELLEALRAAAELAAQL-EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE------AAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 544 TNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPESTRPL 623
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 624 LRQIEA--MQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQG------ 695
Cdd:COG1196 540 LEAALAaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAryyvlg 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 696 --QLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLER 773
Cdd:COG1196 620 dtLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
...
gi 334184030 774 TAR 776
Cdd:COG1196 700 LAE 702
|
|
| TMF_DNA_bd |
pfam12329 |
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA ... |
432-505 |
1.20e-09 |
|
TATA element modulatory factor 1 DNA binding; This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures.. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organization in animal and plant cells.
Pssm-ID: 372049 [Multi-domain] Cd Length: 74 Bit Score: 55.39 E-value: 1.20e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334184030 432 SDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATE 505
Cdd:pfam12329 1 SSLEKLLKEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKNKELEKEIAELKKKLEKLEKELENLEERLKRAE 74
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
393-741 |
1.34e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 62.36 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 393 EAEVESLRE-EYHQRVATLERKVYALTKErdtLRREQNKKSDAAALLKEKDEIInqvmAEGEELSKKQAAQEAQIRKLRA 471
Cdd:PRK02224 193 KAQIEEKEEkDLHERLNGLESELAELDEE---IERYEEQREQARETRDEADEVL----EEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 472 QIREAEEEKKGLITKLQSEENKVESIK------RDKTATEKLLQETIEKHQAELTSQKDyysnALAAAKEAQALAEERTN 545
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEeerddlLAEAGLDDADAEAVEARREELEDRDE----ELRDRLEECRVAAQAHN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 546 NEARS------ELENRLKEAGERESMLVQALEELRQTLSK-KEQQAVYREDM--FRGEIEDLQRRYQASERRCEELitqv 616
Cdd:PRK02224 342 EEAESlredadDLEERAEELREEAAELESELEEAREAVEDrREEIEELEEEIeeLRERFGDAPVDLGNAEDFLEEL---- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 617 pESTRPLLRQIEAMQETSYRTAE--------------------------------------------------AWAAVER 646
Cdd:PRK02224 418 -REERDELREREAELEATLRTARerveeaealleagkcpecgqpvegsphvetieedrerveeleaeledleeEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 647 TLNS--RLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADT 724
Cdd:PRK02224 497 RLERaeDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAE 576
|
410
....*....|....*..
gi 334184030 725 LEGRANQLEVEIRELRR 741
Cdd:PRK02224 577 LNSKLAELKERIESLER 593
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
343-765 |
1.58e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.08 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 343 EKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESlreEYHQRVATLERKVYALTKERD 422
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA---EEKKKADEAKKKAEEDKKKAD 1408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 423 TLRREQNKKSDAAALLKEKDEI--INQVMAEGEELSK----KQAAQEAqiRKLRAQIREAEEEKKGLITKLQSEE-NKVE 495
Cdd:PTZ00121 1409 ELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKadeaKKKAEEA--KKAEEAKKKAEEAKKADEAKKKAEEaKKAD 1486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 496 SIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQ 575
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 576 TLSKKEQQavyREDMFRGEIEDLQrryQASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEawaaVERTLNSRLQEA 655
Cdd:PTZ00121 1567 EEAKKAEE---DKNMALRKAEEAK---KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE----LKKAEEEKKKVE 1636
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 656 ESKAATAEERERSvnERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVE 735
Cdd:PTZ00121 1637 QLKKKEAEEKKKA--EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
|
410 420 430
....*....|....*....|....*....|
gi 334184030 736 IRELRRKHKQElQEVLLHNELIQKDLEREK 765
Cdd:PTZ00121 1715 KKKAEELKKAE-EENKIKAEEAKKEAEEDK 1743
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
343-767 |
2.32e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.23 E-value: 2.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 343 EKTKKEIKMLENaLQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVEslREEYHQRVATLERKVYALTKERD 422
Cdd:PRK03918 148 EKVVRQILGLDD-YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKE--LEEVLREINEISSELPELREELE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 423 TLRREQNKksdaaalLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEkkglITKLQSEENKVESIKRDKT 502
Cdd:PRK03918 225 KLEKEVKE-------LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE----IEELEEKVKELKELKEKAE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 503 ATEKlLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEAR-SELENRLKEAGERESMLVQALEELRQTLSKKE 581
Cdd:PRK03918 294 EYIK-LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERlEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 582 QQAVYREDMFRGEIEDLQRRYQASERRCEELitqvpesTRPLLRQIEAMQETSYRTAEAWAAVErtlnsRLQEAESKAA- 660
Cdd:PRK03918 373 ELERLKKRLTGLTPEKLEKELEELEKAKEEI-------EEEISKITARIGELKKEIKELKKAIE-----ELKKAKGKCPv 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 661 -----TAEERERSVNE---RLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQ-----------RAAENR------QEY 715
Cdd:PRK03918 441 cgrelTEEHRKELLEEytaELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliklkelaeqlKELEEKlkkynlEEL 520
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 334184030 716 LAAKEEADTLEGRANQLEVEIRELRR--KHKQELQEVLLHNELIQKDLEREKAS 767
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLKGEIKSLKKelEKLEELKKKLAELEKKLDELEEELAE 574
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
295-738 |
3.02e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.21 E-value: 3.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 295 SSDEISERIVDFVSR--EIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKE-IKMLENALQGAARQAQAKADEIA 371
Cdd:PRK02224 308 DAEAVEARREELEDRdeELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREeAAELESELEEAREAVEDRREEIE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 372 KLMHENEQLKSVTEDLKRKSNEAE-----VESLREEYHQRVATLERkvyaltkerdTLRREQNKKSDAAALLKEKDEIIN 446
Cdd:PRK02224 388 ELEEEIEELRERFGDAPVDLGNAEdfleeLREERDELREREAELEA----------TLRTARERVEEAEALLEAGKCPEC 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 447 QVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEK--LLQETIEKHQAELTSQKD 524
Cdd:PRK02224 458 GQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERreDLEELIAERRETIEEKRE 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 525 YYS--NALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLvQALEELRQTLSKKEQQAVYREDmFRGEIEDLQRRY 602
Cdd:PRK02224 538 RAEelRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL-AELKERIESLERIRTLLAAIAD-AEDEIERLREKR 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 603 QASERRCEElitqvpestrpllrQIEAMQETSYRTAEAWAAVErtlNSRLQEAESKAATAEERERSVNERLSQTLSRINV 682
Cdd:PRK02224 616 EALAELNDE--------------RRERLAEKRERKRELEAEFD---EARIEEAREDKERAEEYLEQVEEKLDELREERDD 678
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 334184030 683 LEAQLSCLRAEQGQLsKSLeKERQRAAENRQEYLAA-KEEADTLEGRANQLEVEIRE 738
Cdd:PRK02224 679 LQAEIGAVENELEEL-EEL-RERREALENRVEALEAlYDEAEELESMYGDLRAELRQ 733
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
319-956 |
3.09e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 3.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 319 ELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHE-NEQLKSVTEDLKRKSNE-AEV 396
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSElEEEIEELQKELYALANEiSRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 397 ESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVM----AEGEELSKKQAAQEAQIRKLRAQ 472
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELesleAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 473 IREAEEEKKGLITKLQSEENKVESIKRDKTAteklLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSEL 552
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLER----LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 553 EnRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMfrgeIEDLQRRYQASERRCEELI---TQVPESTRPLLRQIEA 629
Cdd:TIGR02168 457 E-RLEEALEELREELEEAEQALDAAERELAQLQARLDS----LERLQENLEGFSEGVKALLknqSGLSGILGVLSELISV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 630 mqETSYRTA------------------EAWAAVE-------------------------------RTLNSRLQEAESKAA 660
Cdd:TIGR02168 532 --DEGYEAAieaalggrlqavvvenlnAAKKAIAflkqnelgrvtflpldsikgteiqgndreilKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 661 TAEERERSVNERLSQTL------------------SRINVLEAQL---------SCLRAEQGQLSKS--LEKERQRAAEN 711
Cdd:TIGR02168 610 FDPKLRKALSYLLGGVLvvddldnalelakklrpgYRIVTLDGDLvrpggvitgGSAKTNSSILERRreIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 712 RQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVllhnELIQKDLEREKASRLDLERTARINSSAVSEQLPIARQ 791
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI----SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 792 NSAFENGSLPRKLSSASSLGSMEESY--FLQASLDSSDKFSEKRSMPEATMSPYYMKSITPSAYEATLRQKEGELASYMT 869
Cdd:TIGR02168 766 LEERLEEAEEELAEAEAEIEELEAQIeqLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 870 RLASMESIRDSLAEELVKMTAECEKLRGEADRVPGIKAELEALRQRHAAALELMGERDEELEELRADIVDLKEMYREQVN 949
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
....*..
gi 334184030 950 MLVNKIQ 956
Cdd:TIGR02168 926 QLELRLE 932
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
378-476 |
6.41e-09 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 59.31 E-value: 6.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 378 EQLKSVTEDLKRKSNEAEVESLREeyhqrvatLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSK 457
Cdd:PRK05431 9 ENPEAVKEALAKRGFPLDVDELLE--------LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKE 80
|
90
....*....|....*....
gi 334184030 458 KQAAQEAQIRKLRAQIREA 476
Cdd:PRK05431 81 EIKALEAELDELEAELEEL 99
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
390-740 |
2.32e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 2.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 390 KSNEAEVESLREeyhqRVATLERKVYALTKERDTLRREQNKKSDAaalLKEKDEIINQVMAEGEELSKKQAAQEAQIRKL 469
Cdd:TIGR02169 670 RSEPAELQRLRE----RLEGLKRELSSLQSELRRIENRLDELSQE---LSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 470 RAQIREAEEEKKGLITKLQSEENKVESikrdktateklLQETIEKHQAELTSQKDYYSnalaAAKEAQALAEERTNNEAR 549
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEE-----------LEEDLHKLEEALNDLEARLS----HSRIPEIQAELSKLEEEV 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 550 SELENRLKEAG---ERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEEL---ITQVPESTRPL 623
Cdd:TIGR02169 808 SRIEARLREIEqklNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaaLRDLESRLGDL 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 624 LRQIEAMQEtSYRTAEawaAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEqGQLSKSLEK 703
Cdd:TIGR02169 888 KKERDELEA-QLRELE---RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-EDVQAELQR 962
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 334184030 704 --ERQRAAEN-----RQEYLAAKEEADTLEGRANQLEVEIRELR 740
Cdd:TIGR02169 963 veEEIRALEPvnmlaIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
386-735 |
3.75e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 3.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 386 DLKRKSNEAEVESLREEYHQRVATLERKvyaltkeRDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQE-- 463
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEEL-------QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQke 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 464 -----AQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQEtIEKHQAELTSQKDyysnalaaakeaqa 538
Cdd:TIGR02168 290 lyalaNEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE-LEEKLEELKEELE-------------- 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 539 laeertnnEARSELENRLKEAGERESmLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPE 618
Cdd:TIGR02168 355 --------SLEAELEELEAELEELES-RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 619 STRPL----LRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQ 694
Cdd:TIGR02168 426 LLKKLeeaeLKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 334184030 695 GQLSKSLEKERQRAA---------ENRQEYLAAKEEAdtLEGRANQLEVE 735
Cdd:TIGR02168 506 EGVKALLKNQSGLSGilgvlseliSVDEGYEAAIEAA--LGGRLQAVVVE 553
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
341-523 |
7.05e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 7.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHE----NEQLKSVTEDLKR-----KSNEAEVESLREEYHQRVATLE 411
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalARRIRALEQELAAleaelAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 412 RKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEE 491
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190
....*....|....*....|....*....|..
gi 334184030 492 NKVESIKRDKTATEKLLQETIEKHQAELTSQK 523
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQ 219
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
292-775 |
8.76e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 8.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 292 KRSSSDEISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQaKADEIA 371
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAK-KADEAK 1321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 372 KlmhENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRR-EQNKKSDAAALLKEKDEIINQVMA 450
Cdd:PTZ00121 1322 K---KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKeEAKKKADAAKKKAEEKKKADEAKK 1398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 451 EGEELSKKQ---AAQEAQIRKLRAQIREAEEEKKGLITKLQSEE-NKVESIKR---DKTATEKLLQETIEKHQAElTSQK 523
Cdd:PTZ00121 1399 KAEEDKKKAdelKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEaKKADEAKKkaeEAKKAEEAKKKAEEAKKAD-EAKK 1477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 524 DYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRG--------EI 595
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKadelkkaeEL 1557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 596 EDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQ 675
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 676 TLSRINVLEAQLSCLRAEQ-------GQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEvEIRELRRKHKQELQ 748
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEeenkikaAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKKEAEEKK 1716
|
490 500
....*....|....*....|....*..
gi 334184030 749 EVllhnELIQKDLEREKASRLDLERTA 775
Cdd:PTZ00121 1717 KA----EELKKAEEENKIKAEEAKKEA 1739
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
341-753 |
1.01e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 55.93 E-value: 1.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVtedLKRKSNEAEVESLREEyhqrVATLERKVYALTKE 420
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL---LQLLPLYQELEALEAE----LAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 421 RDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQ-EAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKR 499
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDlAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 500 DKTATEklLQETIEKHQAELTS------------------------------------QKDYYSNALAAAKEAQALAEER 543
Cdd:COG4717 235 ELEAAA--LEERLKEARLLLLIaaallallglggsllsliltiagvlflvlgllallfLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 544 TNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRgeiedlQRRYQASERRCEELITQVPESTRPL 623
Cdd:COG4717 313 LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE------ELQLEELEQEIAALLAEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 624 LRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERErsVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK 703
Cdd:COG4717 387 LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 334184030 704 --ERQRAAENRQEYLAAKEEADTLE---GRANQLEVEIRELRRKHKQELQEVLLH 753
Cdd:COG4717 465 leEDGELAELLQELEELKAELRELAeewAALKLALELLEEAREEYREERLPPVLE 519
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
341-921 |
1.74e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLkrksnEAEVESLREEYHQ----------RVATL 410
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL-----EEQLETLRSKVAQlelqiaslnnEIERL 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 411 ERKVYALTKERDTLRREQNKKSDAA--ALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQ 488
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLeeAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 489 SEENKVESIKRDKTATEKLLQE--TIEKHQAEL-----------TSQKDYYSNALAAAKEAQALAEERTNNEARSELENR 555
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSEGvkALLKNQSGLsgilgvlseliSVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFL 565
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 556 LKEAGERESMLVQALEELRQTLSKKEQQA-------------VYREDMFRGEIEDL----------------QRRYQASE 606
Cdd:TIGR02168 566 KQNELGRVTFLPLDSIKGTEIQGNDREILkniegflgvakdlVKFDPKLRKALSYLlggvlvvddldnalelAKKLRPGY 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 607 R---------RCEELITQVPEST-----------RPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERE 666
Cdd:TIGR02168 646 RivtldgdlvRPGGVITGGSAKTnssilerrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 667 RSVNE---RLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKH 743
Cdd:TIGR02168 726 RQISAlrkDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 744 KQELQEVLLHNELIQKDLEREKASRLDLERTARinssavseQLPIARQNSAFENGSLprkLSSASSLGSMEESyfLQASL 823
Cdd:TIGR02168 806 DELRAELTLLNEEAANLRERLESLERRIAATER--------RLEDLEEQIEELSEDI---ESLAAEIEELEEL--IEELE 872
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 824 DSSDKFSEKRSMPEATMspyymksitpSAYEATLRQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRVP 903
Cdd:TIGR02168 873 SELEALLNERASLEEAL----------ALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
650
....*....|....*...
gi 334184030 904 GIKAELEALRQRHAAALE 921
Cdd:TIGR02168 943 ERLSEEYSLTLEEAEALE 960
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
557-921 |
3.70e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 3.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 557 KEAGERESMLVQALEELRQTLSKKEQQAVYRE--------DMFRGEIEDLQRRYQASERRCEELITQVPEstrpLLRQIE 628
Cdd:TIGR02169 207 REKAERYQALLKEKREYEGYELLKEKEALERQkeaierqlASLEEELEKLTEEISELEKRLEEIEQLLEE----LNKKIK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 629 AMQETSYRTaeawaavertLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRA 708
Cdd:TIGR02169 283 DLGEEEQLR----------VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 709 AENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQElqevllhneliQKDLEREKASRLDLERtariNSSAVSEQLPI 788
Cdd:TIGR02169 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY-----------REKLEKLKREINELKR----ELDRLQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 789 ARQNSAFENGSLPRKLSSASSLGSMEESyfLQASLDSSD-KFSEKRSMPEATMSPYYMKSITPSAYEATLRQKEGELASY 867
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKED--KALEIKKQEwKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 334184030 868 MTRL-ASMESIRDSLAEELVkmtaecekLRGEADRVPGIKAELEALRQRHAAALE 921
Cdd:TIGR02169 496 EAQArASEERVRGGRAVEEV--------LKASIQGVHGTVAQLGSVGERYATAIE 542
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
457-773 |
4.14e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 4.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 457 KKQAAQEAQIRKLRAQIREAEeeKKGLITKLQSEENKVESIKRDKTAteklLQETIEKHQAELtsqkdyysnalaaakea 536
Cdd:TIGR02168 206 ERQAEKAERYKELKAELRELE--LALLVLRLEELREELEELQEELKE----AEEELEELTAEL----------------- 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 537 qalaeeRTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQavyredmfrgeIEDLQRRYQASERRCEELITQV 616
Cdd:TIGR02168 263 ------QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ-----------KQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 617 PESTRPLLRQIEAMQETSYRTAEAWAAVERtLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQ 696
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELES-LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184030 697 LSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLER 773
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
551-791 |
6.54e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 6.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 551 ELENRLKEAgeRESMLVQALEELRQTLSKKEQQavyrEDMFRGEIEDLQRRYQASERRCEELITQVPEstrpLLRQIEAM 630
Cdd:TIGR02168 217 ELKAELREL--ELALLVLRLEELREELEELQEE----LKEAEEELEELTAELQELEEKLEELRLEVSE----LEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 631 QETSYRTAEAWAAVERtlnsRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAE 710
Cdd:TIGR02168 287 QKELYALANEISRLEQ----QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 711 NRQEYLAakeeadtLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQLPIAR 790
Cdd:TIGR02168 363 LEAELEE-------LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
|
.
gi 334184030 791 Q 791
Cdd:TIGR02168 436 K 436
|
|
| SerS |
COG0172 |
Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Seryl-tRNA synthetase ... |
378-476 |
7.20e-07 |
|
Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Seryl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439942 [Multi-domain] Cd Length: 421 Bit Score: 52.70 E-value: 7.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 378 EQLKSVTEDLKRKSNEAEVESLREeyhqrvatLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSK 457
Cdd:COG0172 9 ENPEAVKEALAKRGFDLDVDELLE--------LDEERRELQTEVEELRAERNALSKEIGKAKKKGEEAEALIAEVKELKE 80
|
90
....*....|....*....
gi 334184030 458 KQAAQEAQIRKLRAQIREA 476
Cdd:COG0172 81 EIKELEEELKELEEELDEL 99
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
312-902 |
1.00e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.92 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 312 DSRLDTSELNESQRSSSATN---VSDSADVILELEKTKKEIKMLENALQgaARQAQAKADEIAKLMHENEQLKSVTEDLK 388
Cdd:pfam12128 270 DETLIASRQEERQETSAELNqllRTLDDQWKEKRDELNGELSAADAAVA--KDRSELEALEDQHGAFLDADIETAAADQE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 389 RKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKsDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIR- 467
Cdd:pfam12128 348 QLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNR-DIAGIKDKLAKIREARDRQLAVAEDDLQALESELRe 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 468 KLRAQIREAEEEKKGLITKLQSEENKVESIkrdkTATEKLL------QETIEKHQAELTSqkdyysnalAAAKEAQALAE 541
Cdd:pfam12128 427 QLEAGKLEFNEEEYRLKSRLGELKLRLNQA----TATPELLlqlenfDERIERAREEQEA---------ANAEVERLQSE 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 542 ERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASER--RCEELITQVPES 619
Cdd:pfam12128 494 LRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELlhRTDLDPEVWDGS 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 620 TRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRA------- 692
Cdd:pfam12128 574 VGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalknarl 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 693 EQGQL-----SKSLEKERQRAAENRQeylaAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKAS 767
Cdd:pfam12128 654 DLRRLfdekqSEKDKKNKALAERKDS----ANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDA 729
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 768 RLDLERTA----RINSSAVSEQLPIARQNSAFENGSLPRKLSSASSLGSMEESYFLQASLDSSDKFSEKRSMPEATMSPY 843
Cdd:pfam12128 730 QLALLKAAiaarRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRR 809
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334184030 844 YMKSITPSAYEATLRQKEGEL----ASYMTRLASMESIRDSLAEELVKMTAECEKLRGEADRV 902
Cdd:pfam12128 810 PRLATQLSNIERAISELQQQLarliADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKL 872
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
293-514 |
1.89e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 293 RSSSDEISERIVDFVSREIDSRLDTSELNES---QRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADE 369
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDlarLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 370 IAKLMHENEQLKSVTEDLKRKSNE--AEVESLREEYHQ---RVATLERKVYALTKERDTLRREQNKKSD----AAALLKE 440
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDElrAELTLLNEEAANlreRLESLERRIAATERRLEDLEEQIEELSEdiesLAAEIEE 863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 441 KDEIINQVMAEGEELSKKQAAQEAQIRKLR-------AQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIE 513
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRseleelsEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
.
gi 334184030 514 K 514
Cdd:TIGR02168 944 R 944
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
341-775 |
2.09e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKEIKMLENALqgaaRQAQAKADEIAKLMHENEQLKSVTEDLKRK--SNEAEVESLRE---EYHQRVATLERKVY 415
Cdd:PRK03918 201 ELEEVLREINEISSEL----PELREELEKLEKEVKELEELKEEIEELEKEleSLEGSKRKLEEkirELEERIEELKKEIE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 416 ALTKERDTLRREQNKKSDAAALLKEKDEIINqvmaEGEELSKKQAAQEAQIRKLRAQIREAE--EEKKGLITKLQSE-EN 492
Cdd:PRK03918 277 ELEEKVKELKELKEKAEEYIKLSEFYEEYLD----ELREIEKRLSRLEEEINGIEERIKELEekEERLEELKKKLKElEK 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 493 KVESIKRDKTATEKL--LQETIEKHQAELTSqkdyYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQAL 570
Cdd:PRK03918 353 RLEELEERHELYEEAkaKKEELERLKKRLTG----LTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 571 EELRqtlSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQVPESTRPLLRQIeamqetsyRTAEAWAAVERTLNS 650
Cdd:PRK03918 429 EELK---KAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKEL--------RELEKVLKKESELIK 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 651 RLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQgqlsKSLEKERQRAAENRQEYLAAKEEADTLEGRAN 730
Cdd:PRK03918 498 LKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEI----KSLKKELEKLEELKKKLAELEKKLDELEEELA 573
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 334184030 731 QLEVEIRELRRKHKQELQEVL-----LHNELIQ-----KDLEREKASRLDLERTA 775
Cdd:PRK03918 574 ELLKELEELGFESVEELEERLkelepFYNEYLElkdaeKELEREEKELKKLEEEL 628
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
552-752 |
2.68e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.17 E-value: 2.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 552 LENRLKEAGERESMLVQALEELRQTLSKKEQQ-AVYRE-----------DMFRGEIEDLQRRYQASERRCEELITQvpes 619
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAAlEEFRQknglvdlseeaKLLLQQLSELESQLAEARAELAEAEAR---- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 620 trplLRQIEAMQETSYRTAEAWAA--VERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLsclRAEQGQL 697
Cdd:COG3206 242 ----LAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL---QQEAQRI 314
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334184030 698 SKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKH--KQELQEVLL 752
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVevARELYESLL 371
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
546-742 |
4.21e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 546 NEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDmfrgEIEDLQRRYQASERRCEELITQVPESTRPLLR 625
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ----ELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 626 QIEAMQETS-----------------YRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLS 688
Cdd:COG4942 109 LLRALYRLGrqpplalllspedfldaVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERA 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 334184030 689 CLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRK 742
Cdd:COG4942 189 ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
433-747 |
5.23e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.72 E-value: 5.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 433 DAAALLKEKDEIINQVMAEgeelskkQAAQEAQIRKLRAQIREAEEEKKGLiTKLQSEENKVEsikrDKTATEKLlqETI 512
Cdd:COG3096 833 DPEAELAALRQRRSELERE-------LAQHRAQEQQLRQQLDQLKEQLQLL-NKLLPQANLLA----DETLADRL--EEL 898
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 513 EKHQAELTSQKDYY-SNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKE----QQAVYR 587
Cdd:COG3096 899 REELDAAQEAQAFIqQHGKALAQLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRRPhfsyEDAVGL 978
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 588 EDMFRGEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQE--TSYRTA-EAWAAVERTLNS-RLQEAESKAATAE 663
Cdd:COG3096 979 LGENSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQVLASlkSSRDAKqQTLQELEQELEElGVQADAEAEERAR 1058
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 664 ERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEirelRRKH 743
Cdd:COG3096 1059 IRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAGWCAVLRLARDNDVE----RRLH 1134
|
....
gi 334184030 744 KQEL 747
Cdd:COG3096 1135 RREL 1138
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
456-718 |
7.30e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 7.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 456 SKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETiekhqaeltsqkdyysnalaaake 535
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL------------------------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 536 aqalaeertnNEARSELENRLKEAGERESMLVQALEELRQTLSK------KEQQAVYREDMFRGE-IEDLQRRYQaserr 608
Cdd:COG4942 75 ----------EQELAALEAELAELEKEIAELRAELEAQKEELAEllralyRLGRQPPLALLLSPEdFLDAVRRLQ----- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 609 ceeLITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLS 688
Cdd:COG4942 140 ---YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA 216
|
250 260 270
....*....|....*....|....*....|
gi 334184030 689 CLRAEQGQLSKSLEKERQRAAENRQEYLAA 718
Cdd:COG4942 217 ELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
341-676 |
9.93e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 9.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSneAEVESLREEYHQRVATLERKVYALTKE 420
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL--EELEEDLSSLEQEIENVKSELKELEAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 421 RDTLRREQNKKSDAAALLKEK--DEIINQVMAEGEELskkqaaqEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIK 498
Cdd:TIGR02169 767 IEELEEDLHKLEEALNDLEARlsHSRIPEIQAELSKL-------EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 499 RDKTATeKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNN--EARSELENRLKEAGERESMLVQALEELRQT 576
Cdd:TIGR02169 840 EQRIDL-KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDlkKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 577 LSKKEQQAVYREDMFRgEIEDLQRRYQaSERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNsrlqEAE 656
Cdd:TIGR02169 919 LSELKAKLEALEEELS-EIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLD----ELK 992
|
330 340
....*....|....*....|
gi 334184030 657 SKAATAEERERSVNERLSQT 676
Cdd:TIGR02169 993 EKRAKLEEERKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
341-740 |
1.15e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLmhENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTKE 420
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEEL--AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 421 RDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRD 500
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 501 -KTATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSK 579
Cdd:COG1196 510 vKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 580 KEQQAVYREDMFRGeIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVE-------------R 646
Cdd:COG1196 590 AALARGAIGAAVDL-VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEggsaggsltggsrR 668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 647 TLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQ------------- 713
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREelleelleeeell 748
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184030 714 ----------------------------------------EYLAAKEEADTLEGRANQLEVEIRELR 740
Cdd:COG1196 749 eeealeelpeppdleelerelerlereiealgpvnllaieEYEELEERYDFLSEQREDLEEARETLE 815
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
357-668 |
1.48e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 357 QGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAA 436
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 437 LLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKR----------DKTATEK 506
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRalleerfaaaLGDAVER 765
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 507 LLQETIEKHQAELTSQKDYYSNALAAAKEA------QALAEERTNNEARSELENRLKEAGEREsmLVQALEELRQTLSKK 580
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEEELERAMRAfnrewpAETADLDADLESLPEYLALLDRLEEDG--LPEYEERFKELLNEN 843
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 581 EQQavyredmfrgEIEDLQRRYQASERRCEELITQVPEStrplLRQIEAMQETSYR-TAEAWAAVE-RTLNSRLQEAESK 658
Cdd:COG4913 844 SIE----------FVADLLSKLRRAIREIKERIDPLNDS----LKRIPFGPGRYLRlEARPRPDPEvREFRQELRAVTSG 909
|
330
....*....|..
gi 334184030 659 A--ATAEERERS 668
Cdd:COG4913 910 AslFDEELSEAR 921
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
355-746 |
2.40e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 2.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 355 ALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEvESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDA 434
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELE-AQIRGNGGDRLEQLEREIERLERELEERERRRARLEAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 435 AALLKEKD--------EIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEK 506
Cdd:COG4913 368 LAALGLPLpasaeefaALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRD 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 507 LLQETIEKHQAEL--------------------------------------------------TSQKDYYSNALAAAKEA 536
Cdd:COG4913 448 ALAEALGLDEAELpfvgelievrpeeerwrgaiervlggfaltllvppehyaaalrwvnrlhlRGRLVYERVRTGLPDPE 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 537 QALAEERT--------NNEARSELENRLkeAGERESMLVQALEELRQT----------------LSKKEQQAVYRE---- 588
Cdd:COG4913 528 RPRLDPDSlagkldfkPHPFRAWLEAEL--GRRFDYVCVDSPEELRRHpraitragqvkgngtrHEKDDRRRIRSRyvlg 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 589 -------DMFRGEIEDLQRRYQASERRCEELITQV--PESTRPLLRQIEAMQETSYRTAEAWAAVER---------TLNS 650
Cdd:COG4913 606 fdnraklAALEAELAELEEELAEAEERLEALEAELdaLQERREALQRLAEYSWDEIDVASAEREIAEleaelerldASSD 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 651 RLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAK----------- 719
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfaaalgdaver 765
|
490 500 510
....*....|....*....|....*....|....
gi 334184030 720 -------EEADTLEGRANQLEVEIRELRRKHKQE 746
Cdd:COG4913 766 elrenleERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
551-744 |
2.94e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 551 ELENRLKEAGEResmlVQALEELRQTLSKKEQQAVYREdmFRGEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAM 630
Cdd:COG4913 259 ELAERYAAARER----LAELEYLRAALRLWFAQRRLEL--LEAELEELRAELARLEAELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 631 QETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSrinVLEAQLSCLRAEQGQLSKSLEKERQRAAE 710
Cdd:COG4913 333 RGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE---EFAALRAEAAALLEALEEELEALEEALAE 409
|
170 180 190
....*....|....*....|....*....|....
gi 334184030 711 NRQEYLAAKEEADTLEGranqlevEIRELRRKHK 744
Cdd:COG4913 410 AEAALRDLRRELRELEA-------EIASLERRKS 436
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
337-766 |
3.10e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.79 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 337 DVILELEKTKKEIKMLEnalqgaaRQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATleRKVYA 416
Cdd:pfam05483 258 DLTFLLEESRDKANQLE-------EKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIAT--KTICQ 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 417 LTKERDTLRREQNKKSDAAALLKEkdeiinqvmaegeELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVES 496
Cdd:pfam05483 329 LTEEKEAQMEELNKAKAAHSFVVT-------------EFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 497 IKRDKTATEKLLQE--TIEKHQAELTSQKDYYSNALAAAKEAQALAE--ERTNNEARSELENRLKEAGERESMLVQALEE 572
Cdd:pfam05483 396 MTKFKNNKEVELEElkKILAEDEKLLDEKKQFEKIAEELKGKEQELIflLQAREKEIHDLEIQLTAIKTSEEHYLKEVED 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 573 LRQTLSK---KEQQAVYREDMFRGEIEDLQRRYQ---ASERRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVER 646
Cdd:pfam05483 476 LKTELEKeklKNIELTAHCDKLLLENKELTQEASdmtLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVRE 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 647 TLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLE 726
Cdd:pfam05483 556 EFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYE 635
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 334184030 727 GRANQLEVEIRELRRK-------HKQELQEVLLHNELIQKDLEREKA 766
Cdd:pfam05483 636 IKVNKLELELASAKQKfeeiidnYQKEIEDKKISEEKLLEEVEKAKA 682
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
341-514 |
4.56e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 4.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKR-----KSNEAEVESLREEYHQRVATLERKV- 414
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKkisslKEKIEKLESEKKEKESKISDLEDELn 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 415 --------YALTKERDTLRREQNK-KSDAAALLK---EKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKG 482
Cdd:TIGR04523 549 kddfelkkENLEKEIDEKNKEIEElKQTQKSLKKkqeEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
170 180 190
....*....|....*....|....*....|..
gi 334184030 483 LITKLQSEENKVESIKRDKTATEKLLQETIEK 514
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
416-670 |
5.72e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 416 ALTKERDTLRRE-QNKKSDAAALLKEKDEIINQVmaegEELSKKQAAQEAQIRKLRAQIREAEEEkkglITKLQSEENKV 494
Cdd:COG4942 24 EAEAELEQLQQEiAELEKELAALKKEEKALLKQL----AALERRIAALARRIRALEQELAALEAE----LAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 495 EsikRDKTATEKLLQETIEKHQaeLTSQKDYYS---NALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALE 571
Cdd:COG4942 96 R---AELEAQKEELAELLRALY--RLGRQPPLAlllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 572 ELRQTLSKKEQqavyredmfrgEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQETsyrtaeawaavERTLNSR 651
Cdd:COG4942 171 AERAELEALLA-----------ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE-----------AEELEAL 228
|
250
....*....|....*....
gi 334184030 652 LQEAESKAATAEERERSVN 670
Cdd:COG4942 229 IARLEAEAAAAAERTPAAG 247
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
340-505 |
7.12e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 7.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 340 LELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAE-----VESLREEYHQRVATL--ER 412
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEleieeVEARIKKYEEQLGNVrnNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 413 KVYALTKERDTLRREQnkksdaaallKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEEN 492
Cdd:COG1579 90 EYEALQKEIESLKRRI----------SDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELE 159
|
170
....*....|...
gi 334184030 493 KVESiKRDKTATE 505
Cdd:COG1579 160 ELEA-EREELAAK 171
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
298-915 |
8.21e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 8.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 298 EISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHEN 377
Cdd:TIGR02169 259 EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 378 EQLKSVTEDLK--RKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEEL 455
Cdd:TIGR02169 339 EELEREIEEERkrRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRL 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 456 SKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEK---LLQETIEKHQAELTSQKDYYSnaLAA 532
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQelyDLKEEYDRVEKELSKLQRELA--EAE 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 533 AKEAQALAEERTNNEARSELENRLK----------------------EAGER--------ESMLVQALEELRQT------ 576
Cdd:TIGR02169 497 AQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgsvgeryataievAAGNRlnnvvvedDAVAKEAIELLKRRkagrat 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 577 ---LSKKEQQAVY----REDMFRGEIEDL---QRRYQASERRC--EELITQVPESTRPLLRQIE---------------- 628
Cdd:TIGR02169 577 flpLNKMRDERRDlsilSEDGVIGFAVDLvefDPKYEPAFKYVfgDTLVVEDIEAARRLMGKYRmvtlegelfeksgamt 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 629 ----AMQETSYRTAEAWAAVERtLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKE 704
Cdd:TIGR02169 657 ggsrAPRGGILFSRSEPAELQR-LRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 705 RQRAAENR-------QEYLAAKEEADTLEGRANQLEVEIRELRRKhKQELQEVLLHNELIQKDLEREKasrldLERTARI 777
Cdd:TIGR02169 736 KERLEELEedlssleQEIENVKSELKELEARIEELEEDLHKLEEA-LNDLEARLSHSRIPEIQAELSK-----LEEEVSR 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 778 NSSAVSEqlpiarqnsafengsLPRKLSSASSLGSMEESYfLQASLDSSDKFSEKRSMPEATMSpyymksitpsAYEATL 857
Cdd:TIGR02169 810 IEARLRE---------------IEQKLNRLTLEKEYLEKE-IQELQEQRIDLKEQIKSIEKEIE----------NLNGKK 863
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 334184030 858 RQKEGELASYMTRLASMESIRDSLAEELVKMTAECEKLRgeaDRVPGIKAELEALRQR 915
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE---RKIEELEAQIEKKRKR 918
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
341-786 |
1.22e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKEIKMLEnALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEyhqrVATLERKVYALTKE 420
Cdd:COG4913 243 ALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAE----LARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 421 RDTLRREqnkksdaaallkeKDEIINQVMAEGEElskkqaaqeaQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRD 500
Cdd:COG4913 318 LDALREE-------------LDELEAQIRGNGGD----------RLEQLEREIERLERELEERERRRARLEALLAALGLP 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 501 KTATEKLLQETIEKHQAELTSQKDYYSnaLAAAKEAQALAEERTNNEARSELENRLKEAGERESM----LVQALEELRQT 576
Cdd:COG4913 375 LPASAEEFAALRAEAAALLEALEEELE--ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNiparLLALRDALAEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 577 LSKKEQQAVY---------REDMFRGEIE---------------------------DLQRR---YQASERRCEELITQVP 617
Cdd:COG4913 453 LGLDEAELPFvgelievrpEEERWRGAIErvlggfaltllvppehyaaalrwvnrlHLRGRlvyERVRTGLPDPERPRLD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 618 ESTrpLLRQIEamqetsYRTAEAWAAVERTLNSRL--------------------------------------------- 652
Cdd:COG4913 533 PDS--LAGKLD------FKPHPFRAWLEAELGRRFdyvcvdspeelrrhpraitragqvkgngtrhekddrrrirsryvl 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 653 -QEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSK------------SLEKERQRAAENRQEYLAAK 719
Cdd:COG4913 605 gFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeidvaSAEREIAELEAELERLDASS 684
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 334184030 720 EEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARINSSAVSEQL 786
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL 751
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
376-743 |
1.40e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 376 ENEQLKSVTEDLKRKSNEaevesLREEYHQRVATLERkvyaltkERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEEL 455
Cdd:pfam02463 174 ALKKLIEETENLAELIID-----LEELKLQELKLKEQ-------AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 456 SKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAELTSQKDYYSNALAAAKE 535
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 536 AQALAEERTNN--EARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQ----RRYQASERRC 609
Cdd:pfam02463 322 EKKKAEKELKKekEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSsaakLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 610 EELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSC 689
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 334184030 690 LRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKH 743
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLG 535
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
351-773 |
1.87e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 351 MLENALQGAARQAQAKADEIAKLmhENEQLKSVTEDLKRKSNE----AEVESLREEYHQRVATLERKVYALTKERDTLRR 426
Cdd:COG4717 46 MLLERLEKEADELFKPQGRKPEL--NLKELKELEEELKEAEEKeeeyAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 427 EQNKKsDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEK 506
Cdd:COG4717 124 LLQLL-PLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 507 LLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAV- 585
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLv 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 586 ------YREDMFRGEIEDLQRRYQASERRCEELITQvpESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAEskA 659
Cdd:COG4717 283 lgllalLFLLLAREKASLGKEAEELQALPALEELEE--EELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE--E 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 660 ATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEY------LAAKEEADTLEGRANQLE 733
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELlgeleeLLEALDEEELEEELEELE 438
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 334184030 734 VEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLER 773
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQLEEDGELAELLQEL 478
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
333-518 |
2.29e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 333 SDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLmheNEQLKSVTEDLKRKsnEAEVESLREEYHQRVATLER 412
Cdd:COG3883 23 KELSELQAELEAAQAELDALQAELEELNEEYNELQAELEAL---QAEIDKLQAEIAEA--EAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 413 KVYALTKER---------DTLRREQNKKsdaaALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGL 483
Cdd:COG3883 98 SGGSVSYLDvllgsesfsDFLDRLSALS----KIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190
....*....|....*....|....*....|....*
gi 334184030 484 ITKLQSEENKVESIKRDKTATEKLLQETIEKHQAE 518
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
624-794 |
2.32e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 624 LRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEK 703
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 704 --------------------ERQRAAENRQEYLAA-----KEEADTLEGRANQLEVEIRELRRKhKQELQEVLLHNELIQ 758
Cdd:COG4942 109 llralyrlgrqpplalllspEDFLDAVRRLQYLKYlaparREQAEELRADLAELAALRAELEAE-RAELEALLAELEEER 187
|
170 180 190
....*....|....*....|....*....|....*.
gi 334184030 759 KDLEREKASRLDLERTARINSSAVSEQLPIARQNSA 794
Cdd:COG4942 188 AALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
268-498 |
2.96e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.89 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 268 IESPVAHPSLIFESDGSPYESS---IPKRSSSDEISERIVDFVSREIDSRLDTSELNESQRSSSATNVSDS--ADVILEL 342
Cdd:PLN02939 58 QRSSNSKLQSNTDENGQLENTSlrtVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFqlEDLVGMI 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 343 EKTKKEIKMLEnalqgaarQAQAKA-DEIAKLMHENEQLK-------------------SVTEDLKRKSNEAEVESLREE 402
Cdd:PLN02939 138 QNAEKNILLLN--------QARLQAlEDLEKILTEKEALQgkinilemrlsetdariklAAQEKIHVEILEEQLEKLRNE 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 403 YHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEkdEIINqvMAEGEE----LSKKQAAQEAQIRKLRAQIREAEE 478
Cdd:PLN02939 210 LLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKA--ELIE--VAETEErvfkLEKERSLLDASLRELESKFIVAQE 285
|
250 260
....*....|....*....|.
gi 334184030 479 EKKGLIT-KLQSEENKVESIK 498
Cdd:PLN02939 286 DVSKLSPlQYDCWWEKVENLQ 306
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
385-902 |
3.84e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 385 EDLKRKSNEAEVESLREEYHQRVATLERKVYALTKERDTLRREQNKKSDA----------AALLKEKDEIINQVMAEGEE 454
Cdd:PTZ00121 1203 EAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEeirkfeearmAHFARRQAAIKAEEARKADE 1282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 455 LSKKQAAQEAQIRKLRAQIREAEEEKKGLITKLQSEE--NKVESIKR-----DKTATEKLLQETIEKHQAELTSQKDYYS 527
Cdd:PTZ00121 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEakKKAEEAKKkadaaKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 528 NALAAAKEAQALAEERTNNEARSELENRLK--EAGERESMLVQALEELRQTLS--------KKEQQAVYREDMFRGEIED 597
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKadEAKKKAEEDKKKADELKKAAAakkkadeaKKKAEEKKKADEAKKKAEE 1442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 598 LQRRYQASE-----RRCEELITQVPESTRPLLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSVNER 672
Cdd:PTZ00121 1443 AKKADEAKKkaeeaKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 673 LSQTLSRINVLEAQLSCLRAEQGQLSKSLEK-ERQRAAENRQEylaaKEEADTLEGRANQLEVEIRELRRKHKQELQEVL 751
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKaEELKKAEEKKK----AEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 752 LHNELIQKdlerEKASRLDLERTARINSSAVSEQLPIARQNSAFENGSLPRKlSSASSLGSMEESYFLQASLDSSDKFSE 831
Cdd:PTZ00121 1599 KLYEEEKK----MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK-KKAEELKKAEEENKIKAAEEAKKAEED 1673
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334184030 832 KRSMPEATMSPYYMK----SITPSAYEA----TLRQKEGELASYMTRLASMESIRDSLAEELvKMTAECEKLRGEADRV 902
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKkaaeALKKEAEEAkkaeELKKKEAEEKKKAEELKKAEEENKIKAEEA-KKEAEEDKKKAEEAKK 1751
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
401-693 |
8.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 8.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 401 EEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALlkekDEIINqvMAEGEELSKKQAAQEAQIRKLRAQIREAEEEK 480
Cdd:COG4913 238 ERAHEALEDAREQIELLEPIRELAERYAAARERLAEL----EYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 481 kglitklqseenkvesikrdktateKLLQETIEKHQAELTsqkdyysnalaaakeaqalaeertnnearsELENRLKEAG 560
Cdd:COG4913 312 -------------------------ERLEARLDALREELD------------------------------ELEAQIRGNG 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 561 eresmlVQALEELRQTLSKKEQqavyredmfrgEIEDLQRRYQASERRCEELITQVPEStrplLRQIEAMQETSYRTAEA 640
Cdd:COG4913 337 ------GDRLEQLEREIERLER-----------ELEERERRRARLEALLAALGLPLPAS----AEEFAALRAEAAALLEA 395
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 334184030 641 WAAVERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSCLRAE 693
Cdd:COG4913 396 LEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDA 448
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
394-768 |
9.12e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 42.75 E-value: 9.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 394 AEVESLREEYHQRVATLERKVyaltkerDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQI 473
Cdd:pfam19220 20 EDLRSLKADFSQLIEPIEAIL-------RELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 474 REAEEEkkglitkLQSEENKVESIKRDKTATEKLLqETIEKHQAELTSQkdyysNALAAAKEAQALAEERTNNEARSELE 553
Cdd:pfam19220 93 AKLEAA-------LREAEAAKEELRIELRDKTAQA-EALERQLAAETEQ-----NRALEEENKALREEAQAAEKALQRAE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 554 NRLKEAGERESMLVQALEELRQTLskkEQQAVyredmfrgEIEDLQRRYQASERRCEELITQVPESTRPLLRQIEAMQ-- 631
Cdd:pfam19220 160 GELATARERLALLEQENRRLQALS---EEQAA--------ELAELTRRLAELETQLDATRARLRALEGQLAAEQAEREra 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 632 ETSYRTAEAWAAVERT-LNSRLQEAESKAATAE--------------ERERSVNERLSQTLSRINVLEAQLSCLRAE-QG 695
Cdd:pfam19220 229 EAQLEEAVEAHRAERAsLRMKLEALTARAAATEqllaearnqlrdrdEAIRAAERRLKEASIERDTLERRLAGLEADlER 308
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 334184030 696 QLSKSLEKERQR-AAENRQEYL----AAKEEA-DTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQKDLEREKASR 768
Cdd:pfam19220 309 RTQQFQEMQRARaELEERAEMLtkalAAKDAAlERAEERIASLSDRIAELTKRFEVERAALEQANRRLKEELQRERAER 387
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
309-784 |
1.17e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.80 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 309 REIDSRLDTS-ELNESQRSSSATNVSDsadvileLEKTKKEIKMLENALQGAAR-QAQAKAD---EIAKLMHENEQLKSV 383
Cdd:pfam15921 88 KDLQRRLNESnELHEKQKFYLRQSVID-------LQTKLQEMQMERDAMADIRRrESQSQEDlrnQLQNTVHELEAAKCL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 384 TEDLKRKSNeAEVESLREEYHQRVATLErKVYALTKERDTLRREQNKKSDAAALLKEKdeiinqvmAEGEELSKKQAAQE 463
Cdd:pfam15921 161 KEDMLEDSN-TQIEQLRKMMLSHEGVLQ-EIRSILVDFEEASGKKIYEHDSMSTMHFR--------SLGSAISKILRELD 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 464 AQIRKLRAQIREAEEEKKGLITKLQseeNKVESIKRDKtatEKLLQETIEKHQAELTSQKDYYSNALAAAkeaqalaeer 543
Cdd:pfam15921 231 TEISYLKGRIFPVEDQLEALKSESQ---NKIELLLQQH---QDRIEQLISEHEVEITGLTEKASSARSQA---------- 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 544 tnNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELIT---QVPEST 620
Cdd:pfam15921 295 --NSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTerdQFSQES 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 621 RPLLRQIEAMQETSYRTaEAWAAVERTLNSRLQEAES-KAATAEERERSVNERLSQtlsrINVLEAQLSCLRAE-QGQLs 698
Cdd:pfam15921 373 GNLDDQLQKLLADLHKR-EKELSLEKEQNKRLWDRDTgNSITIDHLRRELDDRNME----VQRLEALLKAMKSEcQGQM- 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 699 kslekERQRAAENrqeylAAKEEADTLEGRANQLEvEIRELRRKHKQELQEVLLHNELIQKDLEREKASRLDLERTARIN 778
Cdd:pfam15921 447 -----ERQMAAIQ-----GKNESLEKVSSLTAQLE-STKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAT 515
|
....*.
gi 334184030 779 SSAVSE 784
Cdd:pfam15921 516 NAEITK 521
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
340-484 |
1.36e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 340 LELEKTKKEIKMLENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEY---HQRVATLERKVYA 416
Cdd:PRK03918 605 LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYlelSRELAGLRAELEE 684
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334184030 417 LTKERDTLRREQNK-KSDAAALLKEKDEI--INQVMAEGEELSKKqaaqeaqIRKLRAQIREAEEEKKGLI 484
Cdd:PRK03918 685 LEKRREEIKKTLEKlKEELEEREKAKKELekLEKALERVEELREK-------VKKYKALLKERALSKVGEI 748
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
463-618 |
1.47e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 463 EAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQET---IEKHQAEL---TSQKDYysnalaaakeA 536
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVearIKKYEEQLgnvRNNKEY----------E 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 537 QALAEERTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMFRGEIEDLQRRYQASERRCEELITQV 616
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
..
gi 334184030 617 PE 618
Cdd:COG1579 173 PP 174
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
339-589 |
1.76e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 339 ILELEKTKKEIKMLENALQgaarqaQAKAdEIAKLMHENEQ--LKSVTEDLKRKSNE-AEVESLREEYHQRVATLERKVY 415
Cdd:TIGR04523 273 QKELEQNNKKIKELEKQLN------QLKS-EISDLNNQKEQdwNKELKSELKNQEKKlEEIQNQISQNNKIISQLNEQIS 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 416 ALTKERDTLRREQNKKSDAaalLKEKDEIINQVMAEGEELSKKQAAQEAQIRKLRAQIREAEEEKKGL---ITKLQSEEN 492
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRE---LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKdeqIKKLQQEKE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 493 KVE------------------SIKRDKTATEKL---LQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTN-----N 546
Cdd:TIGR04523 423 LLEkeierlketiiknnseikDLTNQDSVKELIiknLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKelkklN 502
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 334184030 547 EARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYRED 589
Cdd:TIGR04523 503 EEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED 545
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
440-742 |
1.86e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 440 EKDEIINQVMAEGEELSKKQ---AAQEAQIRKLRAQIREAEEEKKGLITKLQSEE---NKVESIKRdktateklLQETIE 513
Cdd:COG3096 279 ERRELSERALELRRELFGARrqlAEEQYRLVEMARELEELSARESDLEQDYQAASdhlNLVQTALR--------QQEKIE 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 514 KHQAELTSQKDyysNALAAAKEAQALAEERTNNEARSEL-ENRLKEAGERESMLVQALEELrQTLSKKEQQAVYREDMFR 592
Cdd:COG3096 351 RYQEDLEELTE---RLEEQEEVVEEAAEQLAEAEARLEAaEEEVDSLKSQLADYQQALDVQ-QTRAIQYQQAVQALEKAR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 593 G-------EIEDLQRRYQASERRCEELITQVPESTRPL----------------LRQIEAMQETS------------YRT 637
Cdd:COG3096 427 AlcglpdlTPENAEDYLAAFRAKEQQATEEVLELEQKLsvadaarrqfekayelVCKIAGEVERSqawqtarellrrYRS 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 638 AEAWAAVERTLNSRLQEAESKAATAEERERSVNE---RLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQE 714
Cdd:COG3096 507 QQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEfcqRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQ 586
|
330 340
....*....|....*....|....*...
gi 334184030 715 ylaakeeadtlegrANQLEVEIRELRRK 742
Cdd:COG3096 587 --------------LEQLRARIKELAAR 600
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
388-519 |
2.31e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 388 KRKSNEAEVESLREEyhqrVATLERKVYALTKERDTLRREQNKK----SDAAALLKEKDEIINQVMA--EGEELSKKQAA 461
Cdd:COG1579 25 RLKELPAELAELEDE----LAALEARLEAAKTELEDLEKEIKRLeleiEEVEARIKKYEEQLGNVRNnkEYEALQKEIES 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 334184030 462 QEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKRDKTATEKLLQETIEKHQAEL 519
Cdd:COG1579 101 LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
659-751 |
2.76e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 659 AATAEERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRE 738
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90
....*....|....*.
gi 334184030 739 LRRK---HKQELQEVL 751
Cdd:COG4942 95 LRAEleaQKEELAELL 110
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
311-527 |
3.18e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 311 IDSRLDTSELN-ESQRSSSATNVSDSADVILELEKTKKEIKMLENALQgaarqaqakaDEIAKLmheNEQLKSVTEDLKR 389
Cdd:PHA02562 193 IQQQIKTYNKNiEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELT----------DELLNL---VMDIEDPSAALNK 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 390 KSNEAEVESLREEYHQRVATLERK-------VYALTKERDTLRREQNKKSDAAALLKEKDEIINQV---MAEGEELSKKQ 459
Cdd:PHA02562 260 LNTAAAKIKSKIEQFQKVIKMYEKggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELeeiMDEFNEQSKKL 339
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334184030 460 AAQEAQIRKLRAQIREAEEEKKglitKLQSE-ENKVESIKRDKTATEKL---LQETIEKhQAELTSQKDYYS 527
Cdd:PHA02562 340 LELKNKISTNKQSLITLVDKAK----KVKAAiEELQAEFVDNAEELAKLqdeLDKIVKT-KSELVKEKYHRG 406
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
651-776 |
3.51e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 651 RLQEAESKAATAEERE------RSVNERLSQTLSRINVLEAQLSCLRAEQGQ-----LSKSLEKERQRAAENRQEYLAAK 719
Cdd:COG4913 236 DLERAHEALEDAREQIellepiRELAERYAAARERLAELEYLRAALRLWFAQrrlelLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 334184030 720 EEADTLEGRANQLEVEIRELRRKHKQELQEVLlhnELIQKDLEREKASRLDLERTAR 776
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREI---ERLERELEERERRRARLEALLA 369
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
572-750 |
4.27e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.19 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 572 ELRQTLSKKEQQ-AVYREDMFRGEIEdlQRRYQASERRCEE--LITQVPESTRPL---LRQIEAMQETSYRtaeAWAAVE 645
Cdd:PRK10929 83 ELRQQLNNERDEpRSVPPNMSTDALE--QEILQVSSQLLEKsrQAQQEQDRAREIsdsLSQLPQQQTEARR---QLNEIE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 646 RTL------NSRLQEAESKAATAEE--RERSVNE----RLS----QTLSR--INVLEAQLSCLRAEQGQLSKSLEKERQR 707
Cdd:PRK10929 158 RRLqtlgtpNTPLAQAQLTALQAESaaLKALVDElelaQLSannrQELARlrSELAKKRSQQLDAYLQALRNQLNSQRQR 237
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 334184030 708 AAE---NRQEYLaAKEEADTLEGRANQLEVEiRELRRKHKQELQEV 750
Cdd:PRK10929 238 EAEralESTELL-AEQSGDLPKSIVAQFKIN-RELSQALNQQAQRM 281
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
543-809 |
5.75e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 5.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 543 RTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQavyREDMFRGEIEDLQRRYQASERRCEELitqvpestrp 622
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARL---------- 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 623 lLRQIEAMQETSYRTAEAWAAVERTLNSRLQEAESKAATAEERERSvnerlsqtlsrinvLEAQLSCLRAEQGQLSKSLE 702
Cdd:COG4913 365 -EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAE--------------AEAALRDLRRELRELEAEIA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 703 KERQRAAENRQEYLAAKEEadtLEGRANQLEVEIR------ELRRKHK--QELQEVLLHNE----LIQKDLEREKAS--- 767
Cdd:COG4913 430 SLERRKSNIPARLLALRDA---LAEALGLDEAELPfvgeliEVRPEEErwRGAIERVLGGFaltlLVPPEHYAAALRwvn 506
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 334184030 768 RLDLERtaRINSSAVSEQLPiARQNSAFENGSLPRKLSSASS 809
Cdd:COG4913 507 RLHLRG--RLVYERVRTGLP-DPERPRLDPDSLAGKLDFKPH 545
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
300-479 |
6.51e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 40.43 E-value: 6.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 300 SERIVDFVSReIDSRLDTSELNESQRSSSATNVSDSADVI----LELEKTKKEIKMLENALQGAARQAQAKADEIAKlmh 375
Cdd:pfam13166 278 DDEFTEFQNR-LQKLIEKVESAISSLLAQLPAVSDLASLLsafeLDVEDIESEAEVLNSQLDGLRRALEAKRKDPFK--- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 376 eNEQLKSVTEDLKR-KSNEAEVESLREEYHQRVATLERKVyalTKERDTLRREQNKKSDAaaLLKEKDEIINQVMAEGEE 454
Cdd:pfam13166 354 -SIELDSVDAKIESiNDLVASINELIAKHNEITDNFEEEK---NKAKKKLRLHLVEEFKS--EIDEYKDKYAGLEKAINS 427
|
170 180
....*....|....*....|....*
gi 334184030 455 LSKKQAAQEAQIRKLRAQIREAEEE 479
Cdd:pfam13166 428 LEKEIKNLEAEIKKLREEIKELEAQ 452
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
353-747 |
7.19e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 353 ENALQGAARQAQAKADEIAKLMHENEQLKSVTEDLKRKSN-----------EAEVESLREEYHQRVATLERKVYALTKER 421
Cdd:PRK04863 785 EKRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGshlavafeadpEAELRQLNRRRVELERALADHESQEQQQR 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 422 DTLRREQNKKSDAAALLKE----KDEIINQVMAEGEElsKKQAAQEAQiRKLRAQIREAEEEKKgLITKLQSEENKVESI 497
Cdd:PRK04863 865 SQLEQAKEGLSALNRLLPRlnllADETLADRVEEIRE--QLDEAEEAK-RFVQQHGNALAQLEP-IVSVLQSDPEQFEQL 940
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 498 KRDKTATEKLLQETIEKHQA--ELTSQKDYYSNALAAAKEAQalaeertNNEARSELENRLKEAgerESMLVQALEELRQ 575
Cdd:PRK04863 941 KQDYQQAQQTQRDAKQQAFAltEVVQRRAHFSYEDAAEMLAK-------NSDLNEKLRQRLEQA---EQERTRAREQLRQ 1010
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 576 tlsKKEQQAVYREDMfrgeiEDLQRRYQASERRCEELItqvpestrpllrqiEAMQETSYRTAEawaavertlnsrlqEA 655
Cdd:PRK04863 1011 ---AQAQLAQYNQVL-----ASLKSSYDAKRQMLQELK--------------QELQDLGVPADS--------------GA 1054
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 656 ESKAAtaeERERSVNERLSQTLSRINVLEAQLSCLRAEQGQLSKSLEKERQRAAENRQEYLAAKEEADTLEGRANQLEVE 735
Cdd:PRK04863 1055 EERAR---ARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVE 1131
|
410
....*....|..
gi 334184030 736 irelRRKHKQEL 747
Cdd:PRK04863 1132 ----RRLHRREL 1139
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
304-603 |
7.33e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.28 E-value: 7.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 304 VDFVSR-EIDSRLDT---SELNESQRSSSATNVSDSADVILELEKTKKEIKMLENALQGAARQAQAKADEIAKLmhENEQ 379
Cdd:PRK11281 33 GDLPTEaDVQAQLDAlnkQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL--KDDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 380 LKSVTEDLKRKSNeAEVESLREEYHQRVATLERKVYALTKERDTLR----REQNKKSDAAALLKEKDEIINQVMAEGEEL 455
Cdd:PRK11281 111 DEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQtqpeRAQAALYANSQRLQQIRNLLKGGKVGGKAL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 456 SKKQAAQ-EAQIRKLRAQIREAEEEKKGlITKLQSEENKvesiKRD-KTATEKLLQETIEKHQAELTSQKDYYSNALAAA 533
Cdd:PRK11281 190 RPSQRVLlQAEQALLNAQNDLQRKSLEG-NTQLQDLLQK----QRDyLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQE 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 534 KEAQALAEERTNN-------EARSELENRLKEAGERESMLVQ-------ALEELRQT----------------LSK---K 580
Cdd:PRK11281 265 AQSQDEAARIQANplvaqelEINLQLSQRLLKATEKLNTLTQqnlrvknWLDRLTQSernikeqisvlkgsllLSRilyQ 344
|
330 340
....*....|....*....|....*.
gi 334184030 581 EQQAVYREDMFRG---EIEDLqRRYQ 603
Cdd:PRK11281 345 QQQALPSADLIEGladRIADL-RLEQ 369
|
|
| Seryl_tRNA_N |
pfam02403 |
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA ... |
388-476 |
7.55e-03 |
|
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase.
Pssm-ID: 426757 [Multi-domain] Cd Length: 108 Bit Score: 37.18 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 388 KRKSNEAEVESLREeyhqrvatLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQEAQIR 467
Cdd:pfam02403 20 KRGVDVLDVDELLE--------LDEKRRELQVELEELQAERNELSKEIGQAKKKKEDADALIAEVKELKDELKALEAELK 91
|
....*....
gi 334184030 468 KLRAQIREA 476
Cdd:pfam02403 92 ELEAELDKL 100
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
341-621 |
7.99e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 7.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 341 ELEKTKKeIKMLENALQGAA-RQAQAKADEIAKLMHENEQLKSVTEDLKRKSNEAEVESLREEYHQRVATLERKVYALTK 419
Cdd:pfam17380 311 EVERRRK-LEEAEKARQAEMdRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQ 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 420 ERDTLRREQNKKSDAAALLKEKDEIINQVMAEGEELSKKQaaQEAQIRKLRAQIREAEEEKKGLITKLQSEENKVESIKR 499
Cdd:pfam17380 390 KNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ--EEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQ 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 500 DKT--ATEKLLQETIEKHQAELTSQKDYYSNALAAAKEAQALAEERTNNEARSELENRLKEAGERESMlvQALEELRQTL 577
Cdd:pfam17380 468 QEEerKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERR--REAEEERRKQ 545
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 334184030 578 SKKEQQAVYREDMFRGEIEdlQRRYQASERRcEELITQVPESTR 621
Cdd:pfam17380 546 QEMEERRRIQEQMRKATEE--RSRLEAMERE-REMMRQIVESEK 586
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
543-744 |
8.57e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 39.12 E-value: 8.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 543 RTNNEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMfRGEIEDLQRRYQASERRceeLITQV--PEST 620
Cdd:COG1340 60 QELREKRDELNEKVKELKEERDELNEKLNELREELDELRKELAELNKA-GGSIDKLRKEIERLEWR---QQTEVlsPEEE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 621 RPLLRQIEAMqETSYRTAEAwaavERTLNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQLSclraeqgQLSKS 700
Cdd:COG1340 136 KELVEKIKEL-EKELEKAKK----ALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMI-------ELYKE 203
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 334184030 701 LEKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHK 744
Cdd:COG1340 204 ADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELK 247
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
551-773 |
9.70e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 39.94 E-value: 9.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 551 ELENRLKEAGERESMLVQALEE-------LRQTLSKKEQQAVYRED------------MFRGEIEDLQRRYQASERRCEE 611
Cdd:COG3096 310 EMARELEELSARESDLEQDYQAasdhlnlVQTALRQQEKIERYQEDleelterleeqeEVVEEAAEQLAEAEARLEAAEE 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 612 ----LITQVPESTRPL-LRQIEAMQetsYRtaEAWAAVERTlNSRLQEAESKAATAEERERSVNERLSQTLSRINVLEAQ 686
Cdd:COG3096 390 evdsLKSQLADYQQALdVQQTRAIQ---YQ--QAVQALEKA-RALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQK 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184030 687 LSCLRAEQGQLSKSL--------EKERQRAAENRQEYLAAKEEADTLEGRANQLEVEIRELRRKHKQELQEVLLHNELIQ 758
Cdd:COG3096 464 LSVADAARRQFEKAYelvckiagEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQ 543
|
250
....*....|....*
gi 334184030 759 KdLEREKASRLDLER 773
Cdd:COG3096 544 R-IGQQLDAAEELEE 557
|
|
| |
