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Conserved domains on  [gi|319803038|ref|NP_001188371|]
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avidin precursor [Danio rerio]

Protein Classification

avidin/streptavidin family protein( domain architecture ID 10475691)

avidin/streptavidin family protein similar to avidin and streptavidin, which can form a strong non-covalent specific complex with biotin

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Avidin pfam01382
Avidin family;
36-148 6.87e-35

Avidin family;


:

Pssm-ID: 460182  Cd Length: 113  Bit Score: 117.41  E-value: 6.87e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319803038   36 VTGVWRNELGSTLRVKAEGS--EVRGVYQTAVESTRGaagHHRSARIIGMVS-DGTQPTVSFSVLWEKG-SCSAWVGQCF 111
Cdd:pfam01382   1 LSGTWTNELGSTMTISAVSSngEITGTYRTAVGTTGG---GIKPSPLVGWQAgDNTGPTFGFTVNWDNSdSTTAWTGQCF 77

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 319803038  112 IlDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFF 148
Cdd:pfam01382  78 I-CNGKEVLKTTWLLRSSVSSCEDDWKATRVGQDTFT 113
 
Name Accession Description Interval E-value
Avidin pfam01382
Avidin family;
36-148 6.87e-35

Avidin family;


Pssm-ID: 460182  Cd Length: 113  Bit Score: 117.41  E-value: 6.87e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319803038   36 VTGVWRNELGSTLRVKAEGS--EVRGVYQTAVESTRGaagHHRSARIIGMVS-DGTQPTVSFSVLWEKG-SCSAWVGQCF 111
Cdd:pfam01382   1 LSGTWTNELGSTMTISAVSSngEITGTYRTAVGTTGG---GIKPSPLVGWQAgDNTGPTFGFTVNWDNSdSTTAWTGQCF 77

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 319803038  112 IlDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFF 148
Cdd:pfam01382  78 I-CNGKEVLKTTWLLRSSVSSCEDDWKATRVGQDTFT 113
 
Name Accession Description Interval E-value
Avidin pfam01382
Avidin family;
36-148 6.87e-35

Avidin family;


Pssm-ID: 460182  Cd Length: 113  Bit Score: 117.41  E-value: 6.87e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 319803038   36 VTGVWRNELGSTLRVKAEGS--EVRGVYQTAVESTRGaagHHRSARIIGMVS-DGTQPTVSFSVLWEKG-SCSAWVGQCF 111
Cdd:pfam01382   1 LSGTWTNELGSTMTISAVSSngEITGTYRTAVGTTGG---GIKPSPLVGWQAgDNTGPTFGFTVNWDNSdSTTAWTGQCF 77

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 319803038  112 IlDDGAQVLKTFWMLRSVADNLASAWGSTRMGEDIFF 148
Cdd:pfam01382  78 I-CNGKEVLKTTWLLRSSVSSCEDDWKATRVGQDTFT 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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