|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
279-748 |
5.52e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 5.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 279 EEEEVNLQQLTKALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAyRQQHEENLKLRADNKAANQRVALLAVEVDER 358
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAE-LAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 359 HASLEDNSKKQVQQLEQRHASMVREITLRMTNDRDhwtsmtgkLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAH 438
Cdd:COG1196 391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEE--------LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 439 IQITELLEQNIKLNQELAQTSSSIGGtpehspLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEI------ 512
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAE------AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgveaay 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 513 --------ESLNVELIRSKTKAKKQEKQEKQEDQESAAT------ATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSDA 578
Cdd:COG1196 537 eaaleaalAAALQNIVVEDDEVAAAAIEYLKAAKAGRATflpldkIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 579 SNSGDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAyedcEDYWQTKLSEE 658
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL----EELAERLAEEE 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 659 RQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQfskDGRLSPIDERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQEI 738
Cdd:COG1196 693 LELEEALLAEEEEERELAEAEEERLEEELEEEALE---EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
490
....*....|
gi 320544557 739 SSLQSEIEDL 748
Cdd:COG1196 770 ERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
401-738 |
1.54e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 401 KLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQE---LAQTSSSIGGTPEHSPLRPRRHS 477
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 478 EDKEEEMLQLME---KLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATkrrgdspSK 554
Cdd:TIGR02168 768 ERLEEAEEELAEaeaEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER-------RL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 555 THLTEESPRLGKQRKCTEGEQSDASNSGDWL--ALNSELQRSQSQDEELTSLRQRVAELEEELKAAkEGRSLTPESRSKE 632
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELesELEALLNERASLEEALALLRSELEELSEELREL-ESKRSELRRELEE 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 633 LETSLEQMQRAYEDCE---DYWQTKLSEERQLfekERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGR--LSPIDERD 707
Cdd:TIGR02168 920 LREKLAQLELRLEGLEvriDNLQERLSEEYSL---TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPvnLAAIEEYE 996
|
330 340 350
....*....|....*....|....*....|.
gi 320544557 708 MLEQQYSELEAEAAQLRsSSIQMLEEKAQEI 738
Cdd:TIGR02168 997 ELKERYDFLTAQKEDLT-EAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
466-748 |
5.98e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 5.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 466 PEHSPLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATAT 545
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 546 KRRGDSPSKTHLTEEspRLGKQRKCTEGEQSDASNSGDWLALNSELQRSQSQ----DEELTSLRQRVAELEEEL------ 615
Cdd:TIGR02168 748 RIAQLSKELTELEAE--IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElkalREALDELRAELTLLNEEAanlrer 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 616 -------KAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYwQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVR 688
Cdd:TIGR02168 826 leslerrIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL-IEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 689 EYEEQFSK--------DGRLSPIDER--------DMLEQQYSE---LEAEAAQLRSSSIQMLEEKAQ-EISSLQSEIEDL 748
Cdd:TIGR02168 905 ELESKRSElrreleelREKLAQLELRleglevriDNLQERLSEeysLTLEEAEALENKIEDDEEEARrRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
290-751 |
5.51e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.25 E-value: 5.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 290 KALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYRQQHEEnlkLRADNKAANQRVALLAVEVdERHASLEDNSKKQ 369
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE---LELELEEAQAEEYELLAEL-ARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 370 VQQLEQRHAsmvreitlRMTNDRDHWTSMTGKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNI 449
Cdd:COG1196 311 RRELEERLE--------ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 450 KLNQELAQTSSSIGGTpEHSPLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQ 529
Cdd:COG1196 383 ELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 530 EKQEKQEDQESAATATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSD-------ASNSGDWLALNSELQRSQSQDEEL- 601
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkaalllAGLRGLAGAVAVLIGVEAAYEAALe 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 602 -----------TSLRQRVAELEEELKAAKEGR----SLTPESRSKELETSLEQMQRAYE----DCEDYWQTKLSEERQLF 662
Cdd:COG1196 542 aalaaalqnivVEDDEVAAAAIEYLKAAKAGRatflPLDKIRARAALAAALARGAIGAAvdlvASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 663 EKERQIYEDEQHESDKKFTELMEKVREyEEQFSKDGRLSPIDERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQEISSLQ 742
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLRE-VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
....*....
gi 320544557 743 SEIEDLRQR 751
Cdd:COG1196 701 AEEEEEREL 709
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
586-762 |
1.95e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 586 ALNSELQRSQSQDEEL----TSLRQRVAELEEELKAAKEGRSlTPESRSKELETSLEQMQRAYEdcedywqtKLSEERQL 661
Cdd:TIGR02168 257 ELTAELQELEEKLEELrlevSELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLERQLE--------ELEAQLEE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 662 FEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRlspidERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQ---EI 738
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEA-----ELEELESRLEELEEQLETLRSKVAQLELQIASlnnEI 402
|
170 180
....*....|....*....|....
gi 320544557 739 SSLQSEIEDLRQRLGESVEILTGA 762
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEEL 426
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
400-757 |
2.13e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 400 GKLEAQLKSLEQEEirLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIggtpehsplrprrhSED 479
Cdd:TIGR02169 221 REYEGYELLKEKEA--LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI--------------KDL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 480 KEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVEliRSKTKAKKQEKQEKQEDQESAATATKRRgdspsKTHLTE 559
Cdd:TIGR02169 285 GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER--LAKLEAEIDKLLAEIEELEREIEEERKR-----RDKLTE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 560 ESprlgkqrkctegeqsdasnsgdwlalnselqrsQSQDEELTSLRQRVAELEEELKAAKEgrsltpesRSKELETSLEQ 639
Cdd:TIGR02169 358 EY---------------------------------AELKEELEDLRAELEEVDKEFAETRD--------ELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 640 MQRAYEDCEDYWQTKLSEERQLFEKERQIY------EDEQHESDKKFTELMEKVREYEEQFSkdgrlSPIDERDMLEQQY 713
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNaaiagiEAKINELEEEKEDKALEIKKQEWKLE-----QLAADLSKYEQEL 471
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 320544557 714 SELEAEAAQLRSssiqmleekaqEISSLQSEIEDLRQRLGESVE 757
Cdd:TIGR02169 472 YDLKEEYDRVEK-----------ELSKLQRELAEAEAQARASEE 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
402-754 |
1.15e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 402 LEAQLKSLEQEEIRLRTELELvRTENTELESEQQKAHIQitelleqniKLNQELAQTSSSIggtpehsplrprrhsEDKE 481
Cdd:COG1196 198 LERQLEPLERQAEKAERYREL-KEELKELEAELLLLKLR---------ELEAELEELEAEL---------------EELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 482 EEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKqekqedqesaatatkrrgdspSKTHLTEES 561
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ---------------------DIARLEERR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 562 PRLGKQRkctegEQSDAsnsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQ 641
Cdd:COG1196 312 RELEERL-----EELEE-------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 642 RAYEDcedyWQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDMLEQQYSELEAEAA 721
Cdd:COG1196 380 ELEEL----AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
330 340 350
....*....|....*....|....*....|...
gi 320544557 722 QLRSSSIQMLEEKAQEISSLQSEIEDLRQRLGE 754
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
327-699 |
2.39e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 327 YRQQHEENLKLRADNKAANQRVALLAVEVDERHASLEDNSKKQVQQLEQRHAsmVREITLRMTNDRdhWTSMTGKLEA-- 404
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAE--LRELELALLVLR--LEELREELEElq 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 405 -QLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTPEhSPLRPRRHSEDKEEE 483
Cdd:TIGR02168 246 eELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE-RLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 484 MLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKqekqekqedqesaatatkrrgdspSKTHLTEESPR 563
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE------------------------LESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 564 LGKQRKctegEQSDASNSGDwlALNSELQRSQSQDEELTSLRQR-VAELEEELKAAKEGRSLTPESRSKELETSLEQMQR 642
Cdd:TIGR02168 381 LETLRS----KVAQLELQIA--SLNNEIERLEARLERLEDRRERlQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 320544557 643 AYEDCEDYWQTKLSEERQLFEKERQIYEDEQHESDKKftELMEKVREYEEQFSKDGR 699
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARL--DSLERLQENLEGFSEGVK 509
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
596-707 |
1.48e-05 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 49.31 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 596 SQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYWQtklsEERQLFEKERQIYEdEQHE 675
Cdd:COG0542 408 SKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWE----AEKELIEEIQELKE-ELEQ 482
|
90 100 110
....*....|....*....|....*....|....
gi 320544557 676 SDKKFTELMEKVREYEEQFSKDGRLSP--IDERD 707
Cdd:COG0542 483 RYGKIPELEKELAELEEELAELAPLLReeVTEED 516
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
325-645 |
1.52e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 325 LAYRQQHEENLKLRADNKAANQRVALLAVEVDERHASLEDNsKKQVQQLEQRhasmvreitlrmtndrdhwtsmtgkLEA 404
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL-RLELEELELE-------------------------LEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 405 QLKS---LEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIggtpehsplrprrhsEDKE 481
Cdd:COG1196 286 AQAEeyeLLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL---------------EEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 482 EEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRgdspskTHLTEES 561
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE------RLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 562 PRLGKQRKCTEGEQSDAsnsgdwLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRS--LTPESRSKELETSLEQ 639
Cdd:COG1196 425 ELEEALAELEEEEEEEE------EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAelLEELAEAAARLLLLLE 498
|
....*.
gi 320544557 640 MQRAYE 645
Cdd:COG1196 499 AEADYE 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
586-779 |
1.62e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 586 ALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTpESRSKELETSLEQMQRAYEDCEdywQTKLSEERQLFEKE 665
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEEL-EEELEEAEEELEEAEAELAEAE---EALLEAEAELAEAE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 666 RQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLspiDERDMLEQQYSELEAEAAQLRSSSIQmLEEKAQEISSLQSEI 745
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALL---ERLERLEEELEELEEALAELEEEEEE-EEEALEEAAEEEAEL 454
|
170 180 190
....*....|....*....|....*....|....
gi 320544557 746 EDLRQRLGESVEILTGACELTSESVAQLSAEAGK 779
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
401-754 |
2.34e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 401 KLEAQLKSLEQEEIRlrTELELVRTENTELESEqqkahiqITELLEQNIKLNQELAQTSSSIGGTPEHSPLRPRRHSEDK 480
Cdd:PRK03918 376 RLKKRLTGLTPEKLE--KELEELEKAKEEIEEE-------ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 481 EEEMLQLMEKLAAlqmENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSKTHLTEE 560
Cdd:PRK03918 447 EEHRKELLEEYTA---ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 561 SPRLGKQRKCTEGEQSDASNsgdwlaLNSELQRSQSQDEELTSLRQRVAELEEELKAA-KEGRSLTPESrSKELETSLEQ 639
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKS------LKKELEKLEELKKKLAELEKKLDELEEELAELlKELEELGFES-VEELEERLKE 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 640 MQRAYEDcedYWQTKLSE-ERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDMLEQQYSELEA 718
Cdd:PRK03918 597 LEPFYNE---YLELKDAEkELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
|
330 340 350
....*....|....*....|....*....|....*.
gi 320544557 719 EAAQLRsSSIQMLEEKAQEISSLqseIEDLRQRLGE 754
Cdd:PRK03918 674 ELAGLR-AELEELEKRREEIKKT---LEKLKEELEE 705
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
306-754 |
2.67e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 306 SNMLRALAALQATELGNYRLAYRQQHEENLKLRADN-KAANQRVALLAVEVDERHASLEdnskkQVQQLEQRHASMVREI 384
Cdd:COG4717 37 STLLAFIRAMLLERLEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQE-----ELEELEEELEELEAEL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 385 TlRMTNDRDHWtsmtgKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQkahiQITELLEQNIKLNQELAQTSSSIGg 464
Cdd:COG4717 112 E-ELREELEKL-----EKLLQLLPLYQELEALEAELAELPERLEELEERLE----ELRELEEELEELEAELAELQEELE- 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 465 tpehspLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEK-QEDQESAAT 543
Cdd:COG4717 181 ------ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlKEARLLLLI 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 544 ATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSDAsnsgdWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRS 623
Cdd:COG4717 255 AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALL-----FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 624 LTPESRSKELETSLEQMQRAYEDCEDYWQTKLSEERQLFEKER-QIYEDEQHESDKKFTELMEKVREYEEqfsKDGRLSP 702
Cdd:COG4717 330 LPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIaALLAEAGVEDEEELRAALEQAEEYQE---LKEELEE 406
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 320544557 703 IDERdmLEQQYSELEAEAAQLRSSSI-QMLEEKAQEISSLQSEIEDLRQRLGE 754
Cdd:COG4717 407 LEEQ--LEELLGELEELLEALDEEELeEELEELEEELEELEEELEELREELAE 457
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
566-754 |
6.17e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 6.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 566 KQRKCTEGEQSDASNSGDWLALNSELQRSQsqdEELTSLRQRVAELEEELKAAKEGRSlTPESRSKELETSLEQMQRAYE 645
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLK---ERLEELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLEEALN 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 646 DCEDywqtKLSEER-QLFEKERQIYEDEQHESDKKFTELMEKV--REYEEQFSKDGRLSPIDERDMLEQQYSELEAEAAQ 722
Cdd:TIGR02169 783 DLEA----RLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLnrLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
170 180 190
....*....|....*....|....*....|..
gi 320544557 723 LRSSsiqmLEEKAQEISSLQSEIEDLRQRLGE 754
Cdd:TIGR02169 859 LNGK----KEELEEELEELEAALRDLESRLGD 886
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
595-777 |
8.90e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 8.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 595 QSQDEELTSLRQRVAELEEELKAAK--------------------EGRSLTPESRSKELETSLEQMQRAYEDCEDYWQtK 654
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEkalaelrkeleeleeeleqlRKELEELSRQISALRKDLARLEAEVEQLEERIA-Q 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 655 LSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKD-GRLSPIDER-DMLEQQYSELEAEAAQLRSSsiqmLE 732
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkEELKALREAlDELRAELTLLNEEAANLRER----LE 827
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 320544557 733 EKAQEISSLQSEIEDLRQRLG---ESVEILTGACELTSESVAQLSAEA 777
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEelsEDIESLAAEIEELEELIEELESEL 875
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
329-676 |
1.17e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 329 QQHEENLKLRADNKAANQRVALLAvEVDERHASLEDnSKKQVQQLEQRHASMVREITLRMTNDRDHWTSMTGKLEAQLKS 408
Cdd:TIGR02169 221 REYEGYELLKEKEALERQKEAIER-QLASLEEELEK-LTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 409 LEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQtsssiggtpehspLRPRRHS-----EDKEEE 483
Cdd:TIGR02169 299 LEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE-------------ERKRRDKlteeyAELKEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 484 MLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTkakkqekqekqedqesaatatkrrgdspskthlteESPR 563
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR-----------------------------------ELDR 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 564 LGKQRKCTEGEQSDASNsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSltpesrskELETSLEQMQRA 643
Cdd:TIGR02169 411 LQEELQRLSEELADLNA-----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS--------KYEQELYDLKEE 477
|
330 340 350
....*....|....*....|....*....|...
gi 320544557 644 YEDCEDYwQTKLSEERQLFEKERQIYEDEQHES 676
Cdd:TIGR02169 478 YDRVEKE-LSKLQRELAEAEAQARASEERVRGG 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
599-751 |
1.87e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 599 EELTSLRQRVAELEEELKAAKEGRSLTpESRSKELETSLEQMQRAYedcedyWQTKLSEERQLfekERQIyedEQHESDK 678
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERL-EARLDALREELDELEAQI------RGNGGDRLEQL---EREI---ERLEREL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 679 KftELMEKVREYEEQFSKDGRLSPIDERDMLEQQ---------YSELEAEAAQLRSSSIQMLEEKAQEISSLQSEIEDLR 749
Cdd:COG4913 355 E--ERERRRARLEALLAALGLPLPASAEEFAALRaeaaalleaLEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
..
gi 320544557 750 QR 751
Cdd:COG4913 433 RR 434
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
401-748 |
2.58e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 401 KLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTpehsplrpRRHSEDK 480
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN--------NKKIKEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 481 EEEMLQLMEKLAALQMENAQlrDKTDELTIEIESLNVELIRSKTKakkqekqekQEDQESAATATKRRGDSPSKTHLTEE 560
Cdd:TIGR04523 287 EKQLNQLKSEISDLNNQKEQ--DWNKELKSELKNQEKKLEEIQNQ---------ISQNNKIISQLNEQISQLKKELTNSE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 561 SPRLGKQRKCTEGEQsdasnsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEgrsltpesRSKELETSLEQM 640
Cdd:TIGR04523 356 SENSEKQRELEEKQN----------EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK--------LNQQKDEQIKKL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 641 QRAYEDCEDYwQTKLSEERQLFEKERQIYEDEQHESDKKFTELmEKVREYEEQFSKDGRLSPIDERDMLEQQYSELEAEA 720
Cdd:TIGR04523 418 QQEKELLEKE-IERLKETIIKNNSEIKDLTNQDSVKELIIKNL-DNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKE 495
|
330 340 350
....*....|....*....|....*....|....
gi 320544557 721 AQLRS--SSIQMLEEK----AQEISSLQSEIEDL 748
Cdd:TIGR04523 496 KELKKlnEEKKELEEKvkdlTKKISSLKEKIEKL 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
604-777 |
4.33e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 4.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 604 LRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYWQT---------KLSEERQLFEKERQIYEDEQH 674
Cdd:COG1196 198 LERQLEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAEleeleaeleELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 675 ESDKKFTELMEKVREYEEQFSK-DGRLSPIDERDM-LEQQYSELEAEAAQLRSSSIQM---LEEKAQEISSLQSEIEDLR 749
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARlEQDIARLEERRReLEERLEELEEELAELEEELEELeeeLEELEEELEEAEEELEEAE 357
|
170 180
....*....|....*....|....*...
gi 320544557 750 QRLGESVEILTGACELTSESVAQLSAEA 777
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELA 385
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
595-756 |
5.56e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 5.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 595 QSQDEELTSLRQRVAELEEELKAAKEGRSLTpESRSKELETSLEQMQRAYEDCE----------DYWQTKLSE-----ER 659
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAAL-EARLEAAKTELEDLEKEIKRLEleieeveariKKYEEQLGNvrnnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 660 QLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKdgrlspiderdmLEQQYSELEAEAAQLRSSSIQMLEEKAQEIS 739
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAE------------LEAELAELEAELEEKKAELDEELAELEAELE 159
|
170
....*....|....*..
gi 320544557 740 SLQSEIEDLRQRLGESV 756
Cdd:COG1579 160 ELEAEREELAAKIPPEL 176
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
627-780 |
5.98e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 5.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 627 ESRSKELETSLEQM-QRAYEDCEDYWQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKdgrlspidE 705
Cdd:PRK12704 30 EAKIKEAEEEAKRIlEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR--------K 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320544557 706 RDMLEQQYSELEAEAAQlrsssiqmLEEKAQEISSLQSEIEDLRQrlgESVEILtgaceltsESVAQLSAEAGKS 780
Cdd:PRK12704 102 LELLEKREEELEKKEKE--------LEQKQQELEKKEEELEELIE---EQLQEL--------ERISGLTAEEAKE 157
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
273-515 |
9.44e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 9.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 273 HVLGFDeeeevNLQQLtKALEEELRGIDgdheqsnmlRALAALQAtelgnyRLAYRQQHEENLKLRADnkAANQRVALLA 352
Cdd:COG4913 602 YVLGFD-----NRAKL-AALEAELAELE---------EELAEAEE------RLEALEAELDALQERRE--ALQRLAEYSW 658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 353 VEVDerHASLEdnskKQVQQLEQRHAsmvreitlRMTNDRDHWTsmtgKLEAQLKSLEQEEIRLRTELELVRTENTELES 432
Cdd:COG4913 659 DEID--VASAE----REIAELEAELE--------RLDASSDDLA----ALEEQLEELEAELEELEEELDELKGEIGRLEK 720
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 433 EQQKAhiqitellEQNIKLNQELAQTSSSIGGTPEHSPLRPRRHSEDKEEEMLQLMEKLAAlqmENAQLRDKTDELTIEI 512
Cdd:COG4913 721 ELEQA--------EEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEE---RIDALRARLNRAEEEL 789
|
...
gi 320544557 513 ESL 515
Cdd:COG4913 790 ERA 792
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
580-759 |
9.77e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 9.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 580 NSGDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAkegrsltpESRSKELETSLEQMQRAyEDCEDYWQTKLSEER 659
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL--------EAELEELREELEKLEKL-LQLLPLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 660 QLFEKERQIyedeqhesdkkfTELMEKVREYEEqfskdgrlspiderdmLEQQYSELEAEAAQLRSSSIQMLE----EKA 735
Cdd:COG4717 140 ELAELPERL------------EELEERLEELRE----------------LEEELEELEAELAELQEELEELLEqlslATE 191
|
170 180
....*....|....*....|....
gi 320544557 736 QEISSLQSEIEDLRQRLGESVEIL 759
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEEL 215
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
282-746 |
1.10e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 282 EVNLQQLTKALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYrqqhEENLKLRADNKAANQ-RVALLAVEVDERHA 360
Cdd:pfam05483 316 EEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSL----EELLRTEQQRLEKNEdQLKIITMELQKKSS 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 361 SLEDNSK----KQVQqLEQRHASMVREITLRMTND---------RDHWTSMTGKLEAQLKSLEQEEIR------------ 415
Cdd:pfam05483 392 ELEEMTKfknnKEVE-LEELKKILAEDEKLLDEKKqfekiaeelKGKEQELIFLLQAREKEIHDLEIQltaiktseehyl 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 416 -----LRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIggtpehsplrprRHSEDKEEEMLQLMEK 490
Cdd:pfam05483 471 kevedLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDI------------INCKKQEERMLKQIEN 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 491 LAALQMenaQLRDktdeltiEIESLNVELIRSKTKAKKQEKQekqedqesaataTKRRGDSPSKTHLTEESPRLGKQRKC 570
Cdd:pfam05483 539 LEEKEM---NLRD-------ELESVREEFIQKGDEVKCKLDK------------SEENARSIEYEVLKKEKQMKILENKC 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 571 TEGEQSDASNSGDWLALNSE----LQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSleqmqrayed 646
Cdd:pfam05483 597 NNLKKQIENKNKNIEELHQEnkalKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK---------- 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 647 cedywqtKLSEERQLFEKER-QIYEDE----QHESDK----KFTELMEKVREYEEQFSKdgrlsPIDERDMLEQQYSELE 717
Cdd:pfam05483 667 -------KISEEKLLEEVEKaKAIADEavklQKEIDKrcqhKIAEMVALMEKHKHQYDK-----IIEERDSELGLYKNKE 734
|
490 500
....*....|....*....|....*....
gi 320544557 718 AEAAQLRSSSIQMLEEKAQEISSLQSEIE 746
Cdd:pfam05483 735 QEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
564-757 |
1.17e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 564 LGKQRKCT-EGEQSDASNS--GDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSltpesrskELETSLEQM 640
Cdd:TIGR02169 636 MGKYRMVTlEGELFEKSGAmtGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELR--------RIENRLDEL 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 641 QRAYEDCEdywqtklsEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEqfskdGRLSPIDERDMLEQQYSELEAEA 720
Cdd:TIGR02169 708 SQELSDAS--------RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ-----EIENVKSELKELEARIEELEEDL 774
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 320544557 721 AQLRSS----SIQMLEEKAQEISSLQSEIEDLRQRLGESVE 757
Cdd:TIGR02169 775 HKLEEAlndlEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
400-752 |
1.72e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 400 GKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKahiqITELLEQNIKLNQELAQTSSSIGGTpehsplrpRRHSED 479
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEE----IEELEKELESLEGSKRKLEEKIREL--------EERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 480 KEEEMLQLMEKLAALQmENAQLRDKTDELTIEIESLNVELIR-SKTKAKKQEKQEKQEDQESAATATKRRgdspskthLT 558
Cdd:PRK03918 271 LKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREiEKRLSRLEEEINGIEERIKELEEKEER--------LE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 559 EESPRLGKQRKCTEGEQSDASNSGDWLALNSELQRSQSQ---------DEELTSLRQRVAELEEELKAAKEGRSlTPESR 629
Cdd:PRK03918 342 ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRltgltpeklEKELEELEKAKEEIEEEISKITARIG-ELKKE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 630 SKELETSLEQMQRAYEDCEdYWQTKLSEERQL-----FEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPid 704
Cdd:PRK03918 421 IKELKKAIEELKKAKGKCP-VCGRELTEEHRKelleeYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK-- 497
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 320544557 705 ERDMLEQqyseLEAEAAQLRSSSIQMLEEKAQEISSLQSEIEDLRQRL 752
Cdd:PRK03918 498 LKELAEQ----LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEI 541
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
556-723 |
1.90e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 42.35 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 556 HLTEESPRLGKQRKCTEGEQSDASnsgdwlaLNSELQRSQSQDEEltslrQRVAELEEELKAAKEGRSLtpesrskeLET 635
Cdd:pfam05911 685 RLKEEFEQLKSEKENLEVELASCT-------ENLESTKSQLQESE-----QLIAELRSELASLKESNSL--------AET 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 636 SLEQMQRAYEDCE---DYWQTKLSEERQLFEKerqiYEDEQHESDKKFTELMEKVREYEEQF----SKDGRLSPIDERDM 708
Cdd:pfam05911 745 QLKCMAESYEDLEtrlTELEAELNELRQKFEA----LEVELEEEKNCHEELEAKCLELQEQLerneKKESSNCDADQEDK 820
|
170
....*....|....*
gi 320544557 709 LEQQYSELEAEAAQL 723
Cdd:pfam05911 821 KLQQEKEITAASEKL 835
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
311-521 |
2.28e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 311 ALAALQATELGNyrlayrQQHEENLKLRADNKAANQRVALLAVE-----VDERHASLEdnSKKQVQQLEQRHASMVREIT 385
Cdd:PRK10929 14 SWGAYAATAPDE------KQITQELEQAKAAKTPAQAEIVEALQsalnwLEERKGSLE--RAKQYQQVIDNFPKLSAELR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 386 LRMTNDRDHWTSMTGKLEAQlkSLEQEEIRLRTEL-ELVRtentELESEQQKAhIQITELL----EQNIKLNQELAQTSS 460
Cdd:PRK10929 86 QQLNNERDEPRSVPPNMSTD--ALEQEILQVSSQLlEKSR----QAQQEQDRA-REISDSLsqlpQQQTEARRQLNEIER 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320544557 461 SIGGTPehSPLRPRRHSedkeeemlqlmeKLAALQMENAQLRDKTDELTIEIESLN--VELIR 521
Cdd:PRK10929 159 RLQTLG--TPNTPLAQA------------QLTALQAESAALKALVDELELAQLSANnrQELAR 207
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
400-776 |
2.84e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 2.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 400 GKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTPEhSPLRPRRHSED 479
Cdd:PRK02224 338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV-DLGNAEDFLEE 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 480 KEEEMLQLMEKLAALQM----------ENAQLR------------------DKTDELTIEIESLNVELirSKTKAKKQEK 531
Cdd:PRK02224 417 LREERDELREREAELEAtlrtarerveEAEALLeagkcpecgqpvegsphvETIEEDRERVEELEAEL--EDLEEEVEEV 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 532 QEKQEDQESAATATKRRGDSPSKTHLTEEspRLGKQRKCTEGEQSDASNSGDWLA-LNSELQ----RSQSQDEELTSLRQ 606
Cdd:PRK02224 495 EERLERAEDLVEAEDRIERLEERREDLEE--LIAERRETIEEKRERAEELRERAAeLEAEAEekreAAAEAEEEAEEARE 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 607 RVAELEEELKAAKEGRsltpeSRSKELETSLEqmqrAYEDCEDYWQTkLSEERqlfeKERQIYEDEQHEsdkKFTELMEK 686
Cdd:PRK02224 573 EVAELNSKLAELKERI-----ESLERIRTLLA----AIADAEDEIER-LREKR----EALAELNDERRE---RLAEKRER 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 687 VREYEEQFSKDGRLSPIDERDMLEQQYSELEAEAAQLRS------SSIQMLEEKAQEISSLQSEIEDLRQRLgESVEILT 760
Cdd:PRK02224 636 KRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREerddlqAEIGAVENELEELEELRERREALENRV-EALEALY 714
|
410
....*....|....*.
gi 320544557 761 GACELTSESVAQLSAE 776
Cdd:PRK02224 715 DEAEELESMYGDLRAE 730
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
595-757 |
3.02e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 595 QSQDEELTSLRQRVAELEEELKAAKEgrsltpesRSKELETSLEQMQRAYEDcedywqTKLSEERQLFEKERQIYEDEQH 674
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRK--------ELEEAEAALEEFRQKNGL------VDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 675 ESDKKFTELMEKVREYEEQFSKDGRLSPIDERD----MLEQQYSELEAEAAQLRSSsiqmLEEKAQEISSLQSEIEDLRQ 750
Cdd:COG3206 230 EARAELAEAEARLAALRAQLGSGPDALPELLQSpviqQLRAQLAELEAELAELSAR----YTPNHPDVIALRAQIAALRA 305
|
....*..
gi 320544557 751 RLGESVE 757
Cdd:COG3206 306 QLQQEAQ 312
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
267-447 |
3.20e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 267 NTRNLLHVLGFDEEEEVNLQQLTKA---LEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYRQQHEENLKLRADNKA 343
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAeeeLAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 344 ANQRVALLAVEVDERHASLEDNSKkQVQQLEQRHASMVREITlRMTNDRDHWT--------------SMTGKLEAQLKSL 409
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSE-DIESLAAEIEELEELIE-ELESELEALLnerasleealallrSELEELSEELREL 906
|
170 180 190
....*....|....*....|....*....|....*...
gi 320544557 410 EQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQ 447
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
475-759 |
3.31e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 475 RHSEDKEEEMLQLMEklaalqmENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSK 554
Cdd:pfam02463 166 RLKRKKKEALKKLIE-------ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 555 THLTEESPRLGKQRKctEGEQSDASNSGDWLALNSELQRSQSQDEELTSLRQ-RVAELEEELKAAKEGRSLTPESRSKEL 633
Cdd:pfam02463 239 IDLLQELLRDEQEEI--ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELkLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 634 ETSLEQMQRAYEDCEDYWQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDMLEQQY 713
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 396
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 320544557 714 SELEAEAAQLRSSSIQMLEEKAQEISSLQSEIEDLRQRLGESVEIL 759
Cdd:pfam02463 397 LELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELK 442
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
583-754 |
3.51e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 583 DWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKE-------------GRSLTPESRSKELETSLEQMQRAYEDCED 649
Cdd:COG4913 662 DVASAEREIAELEAELERLDASSDDLAALEEQLEELEAeleeleeeldelkGEIGRLEKELEQAEEELDELQDRLEAAED 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 650 Y---WQTKLSEER-------QLFEKERQIYEDEQHESDKK----FTELMEKVREYEEQF---SKDGRLSPIDERD---ML 709
Cdd:COG4913 742 LarlELRALLEERfaaalgdAVERELRENLEERIDALRARlnraEEELERAMRAFNREWpaeTADLDADLESLPEylaLL 821
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 320544557 710 EQQYS----ELEAEAAQLRSSsiQMLEEKAQEISSLQSEIEDLRQRLGE 754
Cdd:COG4913 822 DRLEEdglpEYEERFKELLNE--NSIEFVADLLSKLRRAIREIKERIDP 868
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
595-784 |
3.88e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 595 QSQDEELTSLRQRVAELEEELKAAKEGRSlTPESRSKELE--TSLEqmqrayEDCEDYWQTKLSEeRQLFEKERQIYEDE 672
Cdd:PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIK-ELEQEIERLEpwGNFD------LDLSLLLGFKYVS-VFVGTVPEDKLEEL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 673 QHESDKKFTELMEKVREYeeqfskdGRLSPIDERDMLEQQYSEL---EAEAAQLRSSSI--QMLEEKAQEISSLQSEIED 747
Cdd:PRK05771 161 KLESDVENVEYISTDKGY-------VYVVVVVLKELSDEVEEELkklGFERLELEEEGTpsELIREIKEELEEIEKERES 233
|
170 180 190
....*....|....*....|....*....|....*..
gi 320544557 748 LRQRLGESVEILTgacELTSESVAQLSAEAGKSPASS 784
Cdd:PRK05771 234 LLEELKELAKKYL---EELLALYEYLEIELERAEALS 267
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
599-737 |
4.11e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 599 EELTSLRQrvaELEEELKaakegrsltpeSRSKELETSLEQMQRAYEDCEDYWQTkLSEERQLFEKERQIYEDEQHESDK 678
Cdd:PRK12704 64 EEIHKLRN---EFEKELR-----------ERRNELQKLEKRLLQKEENLDRKLEL-LEKREEELEKKEKELEQKQQELEK 128
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 679 KFTELMEKVREYEEQFSKDGRLSPIDERDM-LEQQYSELEAEAAQLrsssIQMLEEKAQE 737
Cdd:PRK12704 129 KEEELEELIEEQLQELERISGLTAEEAKEIlLEKVEEEARHEAAVL----IKEIEEEAKE 184
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
348-580 |
5.02e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 348 VALLAVEVDERHASLEDNSKKQVQQLEQRHASMVREITlRMTNDRDhwtsmtgKLEAQLKSLEQEEIRLRTELELVRTEN 427
Cdd:COG4942 7 LALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELA-ALKKEEK-------ALLKQLAALERRIAALARRIRALEQEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 428 TELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTPEHSPLRPRRHSEDKEE--EMLQLM--------EKLAALQME 497
Cdd:COG4942 79 AALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDavRRLQYLkylaparrEQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 498 NAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSD 577
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
...
gi 320544557 578 ASN 580
Cdd:COG4942 239 AAE 241
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
587-754 |
7.23e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 7.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 587 LNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETS-LEQMQRAYEDCEDYWQTKLSE-ERQLFEK 664
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIkLSEFYEEYLDELREIEKRLSRlEEEINGI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 665 ERQIYEDEQHES------------DKKFTELMEKVREYEEQFSKDGRLSPIDER------DMLEQQYSELEAEAAQLRSS 726
Cdd:PRK03918 327 EERIKELEEKEErleelkkklkelEKRLEELEERHELYEEAKAKKEELERLKKRltgltpEKLEKELEELEKAKEEIEEE 406
|
170 180
....*....|....*....|....*...
gi 320544557 727 siqmLEEKAQEISSLQSEIEDLRQRLGE 754
Cdd:PRK03918 407 ----ISKITARIGELKKEIKELKKAIEE 430
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
587-768 |
7.80e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.41 E-value: 7.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 587 LNSELQRSQSQD--EELTSLRQRVAELEEELKAAKEGRSLTPESRSK------ELETSLEQMQRAYEDCEDYWQTKLSEE 658
Cdd:PRK02224 192 LKAQIEEKEEKDlhERLNGLESELAELDEEIERYEEQREQARETRDEadevleEHEERREELETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 659 RqlfekERQIYEDEQHESDKKFTELMEkvrEYEEQFSKDGRLSPIDERdmLEQQYSELEAEAAQLRSSsiqmLEEKAQEI 738
Cdd:PRK02224 272 R-----EREELAEEVRDLRERLEELEE---ERDDLLAEAGLDDADAEA--VEARREELEDRDEELRDR----LEECRVAA 337
|
170 180 190
....*....|....*....|....*....|....
gi 320544557 739 SSLQSEIEDLRQRL----GESVEILTGACELTSE 768
Cdd:PRK02224 338 QAHNEEAESLREDAddleERAEELREEAAELESE 371
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
286-444 |
9.07e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 9.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 286 QQLTKALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYRQQHEENlklradnkaANQRVALLAVEVDERHASLEdn 365
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGN---------GGDRLEQLEREIERLERELE-- 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320544557 366 skkQVQQLEQRHASMVREITLRMTNDRDHWTSMTGKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITEL 444
Cdd:COG4913 356 ---ERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
586-759 |
9.73e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 9.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 586 ALNSELQRSQSQDEELTSLRQRVAELEEELKaakEGRSLTPESRSK--ELETSLEQMQRAYEDCEDYWQTKLSEE---RQ 660
Cdd:PRK03918 180 RLEKFIKRTENIEELIKEKEKELEEVLREIN---EISSELPELREEleKLEKEVKELEELKEEIEELEKELESLEgskRK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320544557 661 LFEKERQIyEDEQHESDKKFTELMEKVREYEE-QFSKDGRLSPIDERDMLEQQYSELEAEAAQLRS---------SSIQM 730
Cdd:PRK03918 257 LEEKIREL-EERIEELKKEIEELEEKVKELKElKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEeingieeriKELEE 335
|
170 180
....*....|....*....|....*....
gi 320544557 731 LEEKAQEISSLQSEIEDLRQRLGESVEIL 759
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELY 364
|
|
| |
