NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|334184394|ref|NP_001189584|]
View 

methyl esterase 4 [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PLN02211 super family cl26328
methyl indole-3-acetate methyltransferase
2-182 7.99e-31

methyl indole-3-acetate methyltransferase


The actual alignment was detected with superfamily member PLN02211:

Pssm-ID: 215128  Cd Length: 273  Bit Score: 113.45  E-value: 7.99e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394   2 EKNNKKRFVLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIQTLKDYCKPLLELLNSLgSDDDKVILV 81
Cdd:PLN02211  14 PNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSL-PENEKVILV 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394  82 AHSMGGIPAALASDIFPSKIATIVFLTAFMpdtRNLPAYVYQKLIRSVPQEGWLDTV----FGTyGKHECPLEfALFGPK 157
Cdd:PLN02211  93 GHSAGGLSVTQAIHRFPKKICLAVYVAATM---LKLGFQTDEDMKDGVPDLSEFGDVyelgFGL-GPDQPPTS-AIIKKE 167
                        170       180
                 ....*....|....*....|....*...
gi 334184394 158 FMAKNLYQLSPVQGQ---EALVRKGTVP 182
Cdd:PLN02211 168 FRRKILYQMSPQEDStlaAMLLRPGPIL 195
 
Name Accession Description Interval E-value
PLN02211 PLN02211
methyl indole-3-acetate methyltransferase
2-182 7.99e-31

methyl indole-3-acetate methyltransferase


Pssm-ID: 215128  Cd Length: 273  Bit Score: 113.45  E-value: 7.99e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394   2 EKNNKKRFVLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIQTLKDYCKPLLELLNSLgSDDDKVILV 81
Cdd:PLN02211  14 PNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSL-PENEKVILV 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394  82 AHSMGGIPAALASDIFPSKIATIVFLTAFMpdtRNLPAYVYQKLIRSVPQEGWLDTV----FGTyGKHECPLEfALFGPK 157
Cdd:PLN02211  93 GHSAGGLSVTQAIHRFPKKICLAVYVAATM---LKLGFQTDEDMKDGVPDLSEFGDVyelgFGL-GPDQPPTS-AIIKKE 167
                        170       180
                 ....*....|....*....|....*...
gi 334184394 158 FMAKNLYQLSPVQGQ---EALVRKGTVP 182
Cdd:PLN02211 168 FRRKILYQMSPQEDStlaAMLLRPGPIL 195
Abhydrolase_1 pfam00561
alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.
7-113 8.19e-16

alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.


Pssm-ID: 395444 [Multi-domain]  Cd Length: 245  Bit Score: 73.31  E-value: 8.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394    7 KRFVLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIQ-TLKDYCKPLLELLNSLGsdDDKVILVAHSM 85
Cdd:pfam00561   1 PPVLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKSSRPKAQDDyRTDDLAEDLEYILEALG--LEKVNLVGHSM 78
                          90       100
                  ....*....|....*....|....*...
gi 334184394   86 GGIPAALASDIFPSKIATIVFLTAFMPD 113
Cdd:pfam00561  79 GGLIALAYAAKYPDRVKALVLLGALDPP 106
EstA COG1075
Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold [Lipid transport and ...
10-107 6.49e-13

Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold [Lipid transport and metabolism];


Pssm-ID: 440693 [Multi-domain]  Cd Length: 106  Bit Score: 62.15  E-value: 6.49e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394  10 VLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIqtLKDYCKPLLELlnslgSDDDKVILVAHSMGGIP 89
Cdd:COG1075    9 VLVHGLGGSAASWAPLAPRLRAAGYPVYALNYPSTNGSIEDSAEQ--LAAFVDAVLAA-----TGAEKVDLVGHSMGGLV 81
                         90       100
                 ....*....|....*....|
gi 334184394  90 A--ALASDIFPSKIATIVFL 107
Cdd:COG1075   82 AryYLKRLGGAAKVARVVTL 101
 
Name Accession Description Interval E-value
PLN02211 PLN02211
methyl indole-3-acetate methyltransferase
2-182 7.99e-31

methyl indole-3-acetate methyltransferase


Pssm-ID: 215128  Cd Length: 273  Bit Score: 113.45  E-value: 7.99e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394   2 EKNNKKRFVLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIQTLKDYCKPLLELLNSLgSDDDKVILV 81
Cdd:PLN02211  14 PNRQPPHFVLIHGISGGSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLIDFLSSL-PENEKVILV 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394  82 AHSMGGIPAALASDIFPSKIATIVFLTAFMpdtRNLPAYVYQKLIRSVPQEGWLDTV----FGTyGKHECPLEfALFGPK 157
Cdd:PLN02211  93 GHSAGGLSVTQAIHRFPKKICLAVYVAATM---LKLGFQTDEDMKDGVPDLSEFGDVyelgFGL-GPDQPPTS-AIIKKE 167
                        170       180
                 ....*....|....*....|....*...
gi 334184394 158 FMAKNLYQLSPVQGQ---EALVRKGTVP 182
Cdd:PLN02211 168 FRRKILYQMSPQEDStlaAMLLRPGPIL 195
PLN02965 PLN02965
Probable pheophorbidase
9-170 1.14e-28

Probable pheophorbidase


Pssm-ID: 178549 [Multi-domain]  Cd Length: 255  Bit Score: 107.70  E-value: 1.14e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394   9 FVLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIQTLKDYCKPLLELLNSLgSDDDKVILVAHSMGGI 88
Cdd:PLN02965   6 FVFVHGASHGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDL-PPDHKVILVGHSIGGG 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394  89 PAALASDIFPSKIATIVFLTAFMPDTRNLPAYVYQKLIrsVPQEGWLDTVFGTyGKHECPLEFaLFGPKFMAKNLYQLSP 168
Cdd:PLN02965  85 SVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVM--EGTEKIWDYTFGE-GPDKPPTGI-MMKPEFVRHYYYNQSP 160

                 ..
gi 334184394 169 VQ 170
Cdd:PLN02965 161 LE 162
Abhydrolase_1 pfam00561
alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.
7-113 8.19e-16

alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.


Pssm-ID: 395444 [Multi-domain]  Cd Length: 245  Bit Score: 73.31  E-value: 8.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394    7 KRFVLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIQ-TLKDYCKPLLELLNSLGsdDDKVILVAHSM 85
Cdd:pfam00561   1 PPVLLLHGLPGSSDLWRKLAPALARDGFRVIALDLRGFGKSSRPKAQDDyRTDDLAEDLEYILEALG--LEKVNLVGHSM 78
                          90       100
                  ....*....|....*....|....*...
gi 334184394   86 GGIPAALASDIFPSKIATIVFLTAFMPD 113
Cdd:pfam00561  79 GGLIALAYAAKYPDRVKALVLLGALDPP 106
EstA COG1075
Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold [Lipid transport and ...
10-107 6.49e-13

Triacylglycerol esterase/lipase EstA, alpha/beta hydrolase fold [Lipid transport and metabolism];


Pssm-ID: 440693 [Multi-domain]  Cd Length: 106  Bit Score: 62.15  E-value: 6.49e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394  10 VLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIqtLKDYCKPLLELlnslgSDDDKVILVAHSMGGIP 89
Cdd:COG1075    9 VLVHGLGGSAASWAPLAPRLRAAGYPVYALNYPSTNGSIEDSAEQ--LAAFVDAVLAA-----TGAEKVDLVGHSMGGLV 81
                         90       100
                 ....*....|....*....|
gi 334184394  90 A--ALASDIFPSKIATIVFL 107
Cdd:COG1075   82 AryYLKRLGGAAKVARVVTL 101
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
10-107 9.46e-12

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 61.56  E-value: 9.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394  10 VLVHGLCHGAWCWYKVKTHLEAvGHCVTAVDLAASGiNMTRLEEIQTLKDYCKPLLELLNSLGsdDDKVILVAHSMGGIP 89
Cdd:COG0596   27 VLLHGLPGSSYEWRPLIPALAA-GYRVIAPDLRGHG-RSDKPAGGYTLDDLADDLAALLDALG--LERVVLVGHSMGGMV 102
                         90
                 ....*....|....*...
gi 334184394  90 AALASDIFPSKIATIVFL 107
Cdd:COG0596  103 ALELAARHPERVAGLVLV 120
PldB COG2267
Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism];
10-120 4.38e-10

Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism];


Pssm-ID: 441868 [Multi-domain]  Cd Length: 221  Bit Score: 56.93  E-value: 4.38e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394  10 VLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIQTLKDYCKPLLELLNSLGSD-DDKVILVAHSMGGI 88
Cdd:COG2267   32 VLVHGLGEHSGRYAELAEALAAAGYAVLAFDLRGHGRSDGPRGHVDSFDDYVDDLRAALDALRARpGLPVVLLGHSMGGL 111
                         90       100       110
                 ....*....|....*....|....*....|...
gi 334184394  89 PAALASDIFPSKIATIVFL-TAFMPDTRNLPAY 120
Cdd:COG2267  112 IALLYAARYPDRVAGLVLLaPAYRADPLLGPSA 144
Abhydrolase_6 pfam12697
Alpha/beta hydrolase family; This family contains alpha/beta hydrolase enzymes of diverse ...
9-139 8.57e-08

Alpha/beta hydrolase family; This family contains alpha/beta hydrolase enzymes of diverse specificity.


Pssm-ID: 463673 [Multi-domain]  Cd Length: 211  Bit Score: 50.55  E-value: 8.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394    9 FVLVHGLCHGAWCWykvkTHLEAVGHCVTAVDLAASGINMTRLEEIQTLKDYckplLELLNSLGsDDDKVILVAHSMGGi 88
Cdd:pfam12697   1 VVLVHGAGLSAAPL----AALLAAGVAVLAPDLPGHGSSSPPPLDLADLADL----AALLDELG-AARPVVLVGHSLGG- 70
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 334184394   89 paALASDIFPSKIATIVFLTAFMPDTRNLPAY--VYQKLIRSVPQEGWLDTVF 139
Cdd:pfam12697  71 --AVALAAAAAALVVGVLVAPLAAPPGLLAALlaLLARLGAALAAPAWLAAES 121
YvaK COG1647
Esterase/lipase [Secondary metabolites biosynthesis, transport and catabolism];
3-133 2.31e-04

Esterase/lipase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 441253 [Multi-domain]  Cd Length: 246  Bit Score: 40.70  E-value: 2.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394   3 KNNKKRFVLVHGLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLEEIqTLKDYCKPLLELLNSLGSDDDKVILVA 82
Cdd:COG1647   12 EGGRKGVLLLHGFTGSPAEMRPLAEALAKAGYTVYAPRLPGHGTSPEDLLKT-TWEDWLEDVEEAYEILKAGYDKVIVIG 90
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 334184394  83 HSMGGIPAALASDIFPSkIATIVFL--TAFMPDTRNLPAYVYQKLIRSVPQEG 133
Cdd:COG1647   91 LSMGGLLALLLAARYPD-VAGLVLLspALKIDDPSAPLLPLLKYLARSLRGIG 142
PRK03592 PRK03592
haloalkane dehalogenase; Provisional
9-134 1.21e-03

haloalkane dehalogenase; Provisional


Pssm-ID: 235135  Cd Length: 295  Bit Score: 38.82  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184394   9 FVLVHGLCHGAWCWYKVKTHLEAVGHCVtAVDLaasgINMTR---LEEIQTLKDYCKPLLELLNSLGSDDdkVILVAHSM 85
Cdd:PRK03592  30 IVFLHGNPTSSYLWRNIIPHLAGLGRCL-APDL----IGMGAsdkPDIDYTFADHARYLDAWFDALGLDD--VVLVGHDW 102
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 334184394  86 GGipaALASDI---FPSKIATIVFLTAFM--PDTRNLPAYVYQ--KLIRSvPQEGW 134
Cdd:PRK03592 103 GS---ALGFDWaarHPDRVRGIAFMEAIVrpMTWDDFPPAVRElfQALRS-PGEGE 154
PRK10673 PRK10673
esterase;
34-105 1.77e-03

esterase;


Pssm-ID: 182637 [Multi-domain]  Cd Length: 255  Bit Score: 38.17  E-value: 1.77e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 334184394  34 HCVTAVDLAASGINmTRLEEIqTLKDYCKPLLELLNSLGSDddKVILVAHSMGGIPAALASDIFPSKIATIV 105
Cdd:PRK10673  43 HDIIQVDMRNHGLS-PRDPVM-NYPAMAQDLLDTLDALQIE--KATFIGHSMGGKAVMALTALAPDRIDKLV 110
PGAP1 pfam07819
PGAP1-like protein; The sequences found in this family are similar to PGAP1. This is an ...
49-109 3.80e-03

PGAP1-like protein; The sequences found in this family are similar to PGAP1. This is an endoplasmic reticulum membrane protein with a catalytic serine containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body. This entry also includes Tgl2, a mitochondria protein that serves as a triacylglycerol lipase in budding yeasts.


Pssm-ID: 369540  Cd Length: 233  Bit Score: 36.96  E-value: 3.80e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334184394   49 TRLEEIQTLKDYCKPLLELLNSLGSDDDKVILVAHSMGGIPAALA---SDIFPSKIATIVFLTA 109
Cdd:pfam07819  64 TLLDQAEYLNDAIRYILSLYASGRPGPTSVILIGHSMGGIVARAAltlPNYIPQSVNTIITLSS 127
PRK14875 PRK14875
acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
31-104 7.02e-03

acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional


Pssm-ID: 184875 [Multi-domain]  Cd Length: 371  Bit Score: 36.46  E-value: 7.02e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334184394  31 AVGHCVTAVDLAASGINMTRLEEiQTLKDYCKPLLELLNSLGSDddKVILVAHSMGG-IPAALASDIfPSKIATI 104
Cdd:PRK14875 155 AAGRPVIALDLPGHGASSKAVGA-GSLDELAAAVLAFLDALGIE--RAHLVGHSMGGaVALRLAARA-PQRVASL 225
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH