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Conserved domains on  [gi|334184638|ref|NP_001189658|]
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transmembrane protein, putative (DUF1068) [Arabidopsis thaliana]

Protein Classification

DUF1068 domain-containing protein( domain architecture ID 11024)

DUF1068 domain-containing protein similar to Arabidopsis thaliana ubiquitin-associated protein NKS1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1068 super family cl05714
Protein of unknown function (DUF1068); This family consists of several hypothetical plant ...
 3-106 9.30e-61

Protein of unknown function (DUF1068); This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam06364:

Pssm-ID: 399393 [Multi-domain]  Cd Length: 165  Bit Score: 183.30  E-value: 9.30e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184638    3 HSLVNCAKRDPEVNEDTEKNYAELLTEELKQREAASMEKHKRVDTGLLEAKKITSSYQKEADKCNSGMETCEEAREKAEK 82
Cdd:pfam06364  62 NSFTDCGKHDPEVSEEMEKNFADLLSEELKLQEAVALENQHRADMALLEAKKIASQYQKEADKCNSGMETCEEAREKAEA 141

                          90       100
                  ....*....|....*....|....
gi 334184638   83 ALVEQKKLTSMWEQRARQKGYKDG 106
Cdd:pfam06364 142 ALVEQRKLTALWEQRARQLGWKEG 165
 
Name Accession Description Interval E-value
DUF1068 pfam06364
Protein of unknown function (DUF1068); This family consists of several hypothetical plant ...
 3-106 9.30e-61

Protein of unknown function (DUF1068); This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.


Pssm-ID: 399393 [Multi-domain]  Cd Length: 165  Bit Score: 183.30  E-value: 9.30e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184638    3 HSLVNCAKRDPEVNEDTEKNYAELLTEELKQREAASMEKHKRVDTGLLEAKKITSSYQKEADKCNSGMETCEEAREKAEK 82
Cdd:pfam06364  62 NSFTDCGKHDPEVSEEMEKNFADLLSEELKLQEAVALENQHRADMALLEAKKIASQYQKEADKCNSGMETCEEAREKAEA 141

                          90       100
                  ....*....|....*....|....
gi 334184638   83 ALVEQKKLTSMWEQRARQKGYKDG 106
Cdd:pfam06364 142 ALVEQRKLTALWEQRARQLGWKEG 165
 
Name Accession Description Interval E-value
DUF1068 pfam06364
Protein of unknown function (DUF1068); This family consists of several hypothetical plant ...
 3-106 9.30e-61

Protein of unknown function (DUF1068); This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.


Pssm-ID: 399393 [Multi-domain]  Cd Length: 165  Bit Score: 183.30  E-value: 9.30e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334184638    3 HSLVNCAKRDPEVNEDTEKNYAELLTEELKQREAASMEKHKRVDTGLLEAKKITSSYQKEADKCNSGMETCEEAREKAEK 82
Cdd:pfam06364  62 NSFTDCGKHDPEVSEEMEKNFADLLSEELKLQEAVALENQHRADMALLEAKKIASQYQKEADKCNSGMETCEEAREKAEA 141

                          90       100
                  ....*....|....*....|....
gi 334184638   83 ALVEQKKLTSMWEQRARQKGYKDG 106
Cdd:pfam06364 142 ALVEQRKLTALWEQRARQLGWKEG 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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