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Conserved domains on  [gi|334187934|ref|NP_001190394|]
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Cytochrome bd ubiquinol oxidase, 14kDa subunit [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UCR_14kD super family cl03509
Ubiquinol-cytochrome C reductase complex 14kD subunit; The ubiquinol-cytochrome C reductase ...
 4-93 1.55e-21

Ubiquinol-cytochrome C reductase complex 14kD subunit; The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 14kD (or VI) subunit of the complex which is not directly involved in electron transfer, but has a role in assembly of the complex.


The actual alignment was detected with superfamily member pfam02271:

Pssm-ID: 460519  Cd Length: 100  Bit Score: 81.41  E-value: 1.55e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334187934    4 FLQRLVDPrknfLARMHMKSVSnrLRRYGLRYDDLYDPlYDLDIKEALNRLPREIVDARNQRLMRAMDLSMKHEYLPDN- 82
Cdd:pfam02271   2 WLSKLLKP----IAKWYANAAG--YRKLGLRYDDLLIE-ENPDVQEALRRLPPKESYDRVFRIRRALQLSLKHKLLPKEq 74

                          90       100
                  ....*....|....*....|....*.
gi 334187934   83 ---------------LQVKRERAERE 93
Cdd:pfam02271  75 wtkpeedvpyltpyiDEVEKEAKERE 100
 
Name Accession Description Interval E-value
UCR_14kD pfam02271
Ubiquinol-cytochrome C reductase complex 14kD subunit; The ubiquinol-cytochrome C reductase ...
 4-93 1.55e-21

Ubiquinol-cytochrome C reductase complex 14kD subunit; The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 14kD (or VI) subunit of the complex which is not directly involved in electron transfer, but has a role in assembly of the complex.


Pssm-ID: 460519  Cd Length: 100  Bit Score: 81.41  E-value: 1.55e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334187934    4 FLQRLVDPrknfLARMHMKSVSnrLRRYGLRYDDLYDPlYDLDIKEALNRLPREIVDARNQRLMRAMDLSMKHEYLPDN- 82
Cdd:pfam02271   2 WLSKLLKP----IAKWYANAAG--YRKLGLRYDDLLIE-ENPDVQEALRRLPPKESYDRVFRIRRALQLSLKHKLLPKEq 74

                          90       100
                  ....*....|....*....|....*.
gi 334187934   83 ---------------LQVKRERAERE 93
Cdd:pfam02271  75 wtkpeedvpyltpyiDEVEKEAKERE 100
 
Name Accession Description Interval E-value
UCR_14kD pfam02271
Ubiquinol-cytochrome C reductase complex 14kD subunit; The ubiquinol-cytochrome C reductase ...
 4-93 1.55e-21

Ubiquinol-cytochrome C reductase complex 14kD subunit; The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex. This Pfam family represents the 14kD (or VI) subunit of the complex which is not directly involved in electron transfer, but has a role in assembly of the complex.


Pssm-ID: 460519  Cd Length: 100  Bit Score: 81.41  E-value: 1.55e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334187934    4 FLQRLVDPrknfLARMHMKSVSnrLRRYGLRYDDLYDPlYDLDIKEALNRLPREIVDARNQRLMRAMDLSMKHEYLPDN- 82
Cdd:pfam02271   2 WLSKLLKP----IAKWYANAAG--YRKLGLRYDDLLIE-ENPDVQEALRRLPPKESYDRVFRIRRALQLSLKHKLLPKEq 74

                          90       100
                  ....*....|....*....|....*.
gi 334187934   83 ---------------LQVKRERAERE 93
Cdd:pfam02271  75 wtkpeedvpyltpyiDEVEKEAKERE 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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