|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
75-1029 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1225.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 75 LGGLLSGIFkGSDNGestRQ--QYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKR 152
Cdd:COG0653 1 MGKLLKKIF-GSRND---RElkRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 153 VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLI 232
Cdd:COG0653 77 VLGMRHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 233 QQNMTPEQRKENYLCDITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYY 295
Cdd:COG0653 157 VHGMDPEERRAAYAADITYgtnnefgfdylrdnmvfSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 296 KAAKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYIIRAKEVLI 374
Cdd:COG0653 237 RINKLVPRLKRDGDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENiELVHHLNQALRAHALFKRDVDYIVKDGEVVI 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 375 VDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTN 454
Cdd:COG0653 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTN 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 455 KPMIRKvcllsyalnlylkiqtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSV 534
Cdd:COG0653 397 RPMIRK------------------------------------DEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSI 440
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 535 EQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPRvvk 614
Cdd:COG0653 441 EKSELLSKLLKKEGIPHNVLNAK--QHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELADRGLEW--- 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 615 ptdgvfvsvkkappkrtwkvneklfpcklsnekaklaEEAVQSAVEAWgqkslteleaeerlsyscekgpvqdevigklr 694
Cdd:COG0653 516 -------------------------------------EEAIAKIKAEW-------------------------------- 526
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 695 taflaiakeykgytDEERKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMM 774
Cdd:COG0653 527 --------------QAEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMM 592
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 775 RAFRV-EDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDI 853
Cdd:COG0653 593 DKLGMeEGEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDL 672
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 854 LEANIGPDTPKESWDFEKLIAKVQQYcYLLNDLTPDLLKSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAER 933
Cdd:COG0653 673 VDEYIPEGSYPEQWDLEGLEEALKEL-FGLDLPIEEWLDEEGLDEEELRERLLEAADEAYEEKEEEL---GPEVMRELER 748
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 934 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQPVRVKKDE--EKKS 1011
Cdd:COG0653 749 VVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREevEEER 828
|
970
....*....|....*...
gi 334186279 1012 QNGKPSKQVDNASEKPKQ 1029
Cdd:COG0653 829 RENHADPAGEEEEEAPKQ 846
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
75-999 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1205.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 75 LGGLLSGIFkGSDNGESTRQqYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVL 154
Cdd:PRK12904 1 MLGLLKKIF-GSRNDRELKR-LRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 155 GLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQ 234
Cdd:PRK12904 79 GMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 235 NMTPEQRKENYLCDITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKA 297
Cdd:PRK12904 159 GMSPEERREAYAADITYgtnnefgfdylrdnmvfSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 298 AKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYIIRAKEVLIVD 376
Cdd:PRK12904 239 NKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENiALVHHLNQALRAHELFKRDVDYIVKDGEVVIVD 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 377 EFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKP 456
Cdd:PRK12904 319 EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRP 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 457 MIRKvcllsyalnlylkiqtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQ 536
Cdd:PRK12904 399 MIRI------------------------------------DHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEK 442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 537 SDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREilmprvvkpt 616
Cdd:PRK12904 443 SELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE---------- 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 617 dgvfvsvkkappkrtwkvneklfpcklsnekaklaeeavqsaveawgqksltelEAEERLsyscekgpvqdevigklrta 696
Cdd:PRK12904 511 ------------------------------------------------------ETEEQI-------------------- 516
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 697 flaiaKEYKGYTDEERKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRA 776
Cdd:PRK12904 517 -----AKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDR 591
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 777 FRV-EDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILE 855
Cdd:PRK12904 592 LGMkEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVD 671
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 856 ANIGPDTPKESWDFEKLIAKVQQYCYLlnDLTPDLLKSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAERFL 935
Cdd:PRK12904 672 AYIPPGSYEEDWDLEGLEEALKTDFGL--ELPIEEWLEEGLDEEELRERILEAAEEAYEEKEEEL---GEEQMREFERVV 746
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334186279 936 ILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQ 999
Cdd:PRK12904 747 MLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEMLDSIKEEVVRTLMKVQ 810
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
103-987 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1162.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 103 VNRLETEISALSDSELRERTDALKQRAQK-GESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGE 181
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 182 GKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITY---------- 251
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYgtnnelgfdy 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 252 -------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHYTVDEKQKTVLLTEQ 324
Cdd:TIGR00963 161 lrdnmahSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 325 GYEDAEEILDVKDLYDP-REQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLP 403
Cdd:TIGR00963 241 GMKKAEDLLGVDNLYDLeNSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 404 IQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKvcllsyalnlylkiqtvglhncs 483
Cdd:TIGR00963 321 IQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRK----------------------- 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 484 psedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVER 563
Cdd:TIGR00963 378 -------------DRPDLVYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHER 442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 564 EAEIVAQSGRLGAVTIATNMAGRGTDIILggnaefmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpckl 643
Cdd:TIGR00963 443 EAEIIAQAGRKGAVTIATNMAGRGTDIKL--------------------------------------------------- 471
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 644 snekaklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerKKVVEAGGLHV 723
Cdd:TIGR00963 472 ---------------------------------------------------------------------EEVKELGGLYV 482
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 724 VGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRVED-LPIESKMLTKALDEAQRKVEN 802
Cdd:TIGR00963 483 IGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMDDdEPIESKMVSRALESAQKRVEG 562
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 803 YFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDTPKESWDFEKLIAKVQQYCYL 882
Cdd:TIGR00963 563 RNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLL 642
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 883 LNDLTPDLLksEGSSYEGLQDYLRARGRDAYLQKREIVEKQspgLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRG 962
Cdd:TIGR00963 643 DGDLTPEDL--ENLTSEDLKELLLEKIRAAYDEKEEQLESE---RMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRS 717
|
890 900
....*....|....*....|....*
gi 334186279 963 YAQRDPLIEYKLEGYNLFLEMMAQI 987
Cdd:TIGR00963 718 YGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
79-440 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 642.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 79 LSGIFkGSDNgESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRP 158
Cdd:smart00957 1 LKKLF-GSKN-DRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 159 FDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTP 238
Cdd:smart00957 79 FDVQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 239 EQRKENYLCDITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKP-SDQYYKAAKI 300
Cdd:smart00957 159 EERRAAYAADITYgtnnefgfdylrdnmafSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDEsSDLYHRADKF 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 301 ASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDP-REQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFT 379
Cdd:smart00957 239 VPRLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPeNIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFT 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334186279 380 GRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 440
Cdd:smart00957 319 GRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
79-440 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 624.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 79 LSGIFkGSDNgESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRP 158
Cdd:pfam07517 1 LKKIF-GSPN-ERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 159 FDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTP 238
Cdd:pfam07517 79 YDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 239 EQRKENYLCDITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIA 301
Cdd:pfam07517 159 EERRAAYNADITYgtnnelgfdylrdnmatSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 302 SAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPR-EQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTG 380
Cdd:pfam07517 239 KSLEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPEnVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTG 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 381 RVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 440
Cdd:pfam07517 319 RVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
117-453 |
7.82e-117 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 358.77 E-value: 7.82e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 117 ELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNAL 196
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 197 SGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITY-----------------SVEELVLR 259
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYgtnnelgfdylrdnmvtSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 260 DFNYCVIDEVDSILIDEARTPLIISGpaekpsdqyykaakiasaferdihytvdekqktvllteqgyedaeeildvkdly 339
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 340 dpreqwasyvlnaikakelflrdvnyiirakevlivdeftgrvmqgrrwsdglhqaveakeglpiqnesiTLASISYQNF 419
Cdd:cd17928 187 ----------------------------------------------------------------------TLATITFQNY 196
|
330 340 350
....*....|....*....|....*....|....
gi 334186279 420 FLQFPKLCGMTGTASTESAEFESIYKLKVTIVPT 453
Cdd:cd17928 197 FRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
75-1029 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1225.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 75 LGGLLSGIFkGSDNGestRQ--QYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKR 152
Cdd:COG0653 1 MGKLLKKIF-GSRND---RElkRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 153 VLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLI 232
Cdd:COG0653 77 VLGMRHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVI 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 233 QQNMTPEQRKENYLCDITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYY 295
Cdd:COG0653 157 VHGMDPEERRAAYAADITYgtnnefgfdylrdnmvfSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 296 KAAKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYIIRAKEVLI 374
Cdd:COG0653 237 RINKLVPRLKRDGDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENiELVHHLNQALRAHALFKRDVDYIVKDGEVVI 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 375 VDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTN 454
Cdd:COG0653 317 VDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTN 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 455 KPMIRKvcllsyalnlylkiqtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSV 534
Cdd:COG0653 397 RPMIRK------------------------------------DEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSI 440
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 535 EQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPRvvk 614
Cdd:COG0653 441 EKSELLSKLLKKEGIPHNVLNAK--QHEREAEIVAQAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELADRGLEW--- 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 615 ptdgvfvsvkkappkrtwkvneklfpcklsnekaklaEEAVQSAVEAWgqkslteleaeerlsyscekgpvqdevigklr 694
Cdd:COG0653 516 -------------------------------------EEAIAKIKAEW-------------------------------- 526
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 695 taflaiakeykgytDEERKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMM 774
Cdd:COG0653 527 --------------QAEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMM 592
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 775 RAFRV-EDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDI 853
Cdd:COG0653 593 DKLGMeEGEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDL 672
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 854 LEANIGPDTPKESWDFEKLIAKVQQYcYLLNDLTPDLLKSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAER 933
Cdd:COG0653 673 VDEYIPEGSYPEQWDLEGLEEALKEL-FGLDLPIEEWLDEEGLDEEELRERLLEAADEAYEEKEEEL---GPEVMRELER 748
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 934 FLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQPVRVKKDE--EKKS 1011
Cdd:COG0653 749 VVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEEEREevEEER 828
|
970
....*....|....*...
gi 334186279 1012 QNGKPSKQVDNASEKPKQ 1029
Cdd:COG0653 829 RENHADPAGEEEEEAPKQ 846
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
75-999 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1205.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 75 LGGLLSGIFkGSDNGESTRQqYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVL 154
Cdd:PRK12904 1 MLGLLKKIF-GSRNDRELKR-LRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 155 GLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQ 234
Cdd:PRK12904 79 GMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 235 NMTPEQRKENYLCDITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKA 297
Cdd:PRK12904 159 GMSPEERREAYAADITYgtnnefgfdylrdnmvfSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 298 AKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYIIRAKEVLIVD 376
Cdd:PRK12904 239 NKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENiALVHHLNQALRAHELFKRDVDYIVKDGEVVIVD 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 377 EFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKP 456
Cdd:PRK12904 319 EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRP 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 457 MIRKvcllsyalnlylkiqtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQ 536
Cdd:PRK12904 399 MIRI------------------------------------DHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEK 442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 537 SDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREilmprvvkpt 616
Cdd:PRK12904 443 SELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEE---------- 510
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 617 dgvfvsvkkappkrtwkvneklfpcklsnekaklaeeavqsaveawgqksltelEAEERLsyscekgpvqdevigklrta 696
Cdd:PRK12904 511 ------------------------------------------------------ETEEQI-------------------- 516
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 697 flaiaKEYKGYTDEERKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRA 776
Cdd:PRK12904 517 -----AKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDR 591
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 777 FRV-EDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILE 855
Cdd:PRK12904 592 LGMkEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVD 671
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 856 ANIGPDTPKESWDFEKLIAKVQQYCYLlnDLTPDLLKSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAERFL 935
Cdd:PRK12904 672 AYIPPGSYEEDWDLEGLEEALKTDFGL--ELPIEEWLEEGLDEEELRERILEAAEEAYEEKEEEL---GEEQMREFERVV 746
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 334186279 936 ILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQ 999
Cdd:PRK12904 747 MLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEMLDSIKEEVVRTLMKVQ 810
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
103-987 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1162.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 103 VNRLETEISALSDSELRERTDALKQRAQK-GESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGE 181
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 182 GKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITY---------- 251
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYgtnnelgfdy 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 252 -------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHYTVDEKQKTVLLTEQ 324
Cdd:TIGR00963 161 lrdnmahSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 325 GYEDAEEILDVKDLYDP-REQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLP 403
Cdd:TIGR00963 241 GMKKAEDLLGVDNLYDLeNSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 404 IQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKvcllsyalnlylkiqtvglhncs 483
Cdd:TIGR00963 321 IQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRK----------------------- 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 484 psedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVER 563
Cdd:TIGR00963 378 -------------DRPDLVYKTEEEKWKAVVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHER 442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 564 EAEIVAQSGRLGAVTIATNMAGRGTDIILggnaefmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpckl 643
Cdd:TIGR00963 443 EAEIIAQAGRKGAVTIATNMAGRGTDIKL--------------------------------------------------- 471
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 644 snekaklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerKKVVEAGGLHV 723
Cdd:TIGR00963 472 ---------------------------------------------------------------------EEVKELGGLYV 482
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 724 VGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRVED-LPIESKMLTKALDEAQRKVEN 802
Cdd:TIGR00963 483 IGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMDDdEPIESKMVSRALESAQKRVEG 562
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 803 YFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDTPKESWDFEKLIAKVQQYCYL 882
Cdd:TIGR00963 563 RNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDLSELILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLL 642
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 883 LNDLTPDLLksEGSSYEGLQDYLRARGRDAYLQKREIVEKQspgLMKDAERFLILSNIDRLWKEHLQALKFVQQAVGLRG 962
Cdd:TIGR00963 643 DGDLTPEDL--ENLTSEDLKELLLEKIRAAYDEKEEQLESE---RMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRS 717
|
890 900
....*....|....*....|....*
gi 334186279 963 YAQRDPLIEYKLEGYNLFLEMMAQI 987
Cdd:TIGR00963 718 YGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
88-1000 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 1150.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 88 NGESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGM 167
Cdd:CHL00122 7 NNKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDVQLIGGL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 168 VLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLC 247
Cdd:CHL00122 87 VLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYLK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 248 DITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHY 310
Cdd:CHL00122 167 DITYvtnselgfdylrdnmalSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHY 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 311 TVDEKQKTVLLTEQGYEDAEEILDVKDLYDPREQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSD 390
Cdd:CHL00122 247 EVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSD 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 391 GLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKvcllsyalnl 470
Cdd:CHL00122 327 GLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRK---------- 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 471 ylkiqtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGIT 550
Cdd:CHL00122 397 --------------------------DLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLP 450
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 551 HEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILmprvvkptdgvfvsvKKAPPKR 630
Cdd:CHL00122 451 HQLLNAKPENVRRESEIVAQAGRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLL---------------LSYKSNE 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 631 TWKVNEKLFPCKLSNEKAKLAeeavqsaveawgQKSLTELEAEERLSYSCEKGPVQDEVIGKLRTAFLAIAKEYKGYTDE 710
Cdd:CHL00122 516 KISTISQNFLNILNSLKNDLK------------FLSLSDFENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEK 583
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 711 ERKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRVEDLPIESKMLT 790
Cdd:CHL00122 584 EKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFGGDKIQNLMQTLNLDDEPLESKLLS 663
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 791 KALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDTPKeswdfE 870
Cdd:CHL00122 664 KSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQSLRDWILAYGEQVIDDIITFLKSRKNPN-----N 738
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 871 KLIAKVQQYCYLLND-LTPDLLKSEGSSYEGLQDYLRARGRDAYLQKREIVEKQSPGLMKDAERFLILSNIDRLWKEHLQ 949
Cdd:CHL00122 739 KFINLINKFKELLKLpLCFNKSDLNTLNSGELKKFLYQQFWISYDLKELYLEQIGTGLMRELERSLLLQQIDKSWKEHLQ 818
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 334186279 950 ALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQP 1000
Cdd:CHL00122 819 KMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDLFRSSI 869
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
87-999 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 917.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 87 DNGESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGG 166
Cdd:PRK12906 10 DNDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLRPFDVQIIGG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 167 MVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYL 246
Cdd:PRK12906 90 IVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYN 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 247 CDITYS-----------------VEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERD-- 307
Cdd:PRK12906 170 CDITYStnselgfdylrdnmvvyKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDea 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 308 ---------IHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPREQ-WASYVLNAIKAKELFLRDVNYIIRAKEVLIVDE 377
Cdd:PRK12906 250 edgdddedtGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTaLAHHIDQALRANYIMLKDIDYVVQDGEVLIVDE 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 378 FTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPM 457
Cdd:PRK12906 330 FTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPV 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 458 IRKvcllsyalnlylkiqtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQS 537
Cdd:PRK12906 410 IRK------------------------------------DSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 538 DELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNaefmarlklreilmprvvkptd 617
Cdd:PRK12906 454 ERLSHLLDEAGIPHAVLNAK--NHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPG---------------------- 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 618 gvfvsvkkappkrtwkvneklfpcklsnekaklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaf 697
Cdd:PRK12906 --------------------------------------------------------------------------------
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 698 laiakeykgytdeerkkVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAF 777
Cdd:PRK12906 510 -----------------VKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRL 572
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 778 RVED--LPIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSD-SLEPLIIEYAELTMDDIL 854
Cdd:PRK12906 573 GMNDddQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINEDkDLKEVLMPMIKRTVDRQV 652
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 855 EANIGPDtpKESWDFEKLIAKVQQycYLLNDLTPDLLKSEGSSYEGLQDYLRARGRDAYLQKREivEKQSPGLMKDAERF 934
Cdd:PRK12906 653 QMYTQGD--KKDWDLDALRDFIVS--AMPDEETFDFEDLKGKSPEELKKRLLDIVEDNYAEKEK--QLGDPTQMLEFEKV 726
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334186279 935 LILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQ 999
Cdd:PRK12906 727 VILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQ 791
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
94-1008 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 784.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 94 QQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGE 173
Cdd:PRK09200 15 KKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQLIGALVLHEGN 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 174 IAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGL-IQQNMTPEQRKENYLCDITY- 251
Cdd:PRK09200 95 IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLnFSDIDDASEKKAIYEADIIYt 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 252 ----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHYTVDEK 315
Cdd:PRK09200 175 tnselgfdylrdnladSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 316 QKTVLLTEQGYEDAEEILDVKDLYDPREQ-WASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQ 394
Cdd:PRK09200 255 KKEVWLTDQGIEKAESYFGIDNLYSLEHQvLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQ 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 395 AVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKvcllsyalnlylki 474
Cdd:PRK09200 335 AIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRI-------------- 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 475 qtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVL 554
Cdd:PRK09200 401 ----------------------DYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 555 NAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGgnaefmarlklreilmprvvkptdgvfvsvkkappkrtwkv 634
Cdd:PRK09200 459 NAK--NAAKEAQIIAEAGQKGAVTVATNMAGRGTDIKLG----------------------------------------- 495
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 635 neklfpcklsnekaklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerKK 714
Cdd:PRK09200 496 ------------------------------------------------------------------------------EG 497
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 715 VVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRVEDL----PIESKMLT 790
Cdd:PRK09200 498 VHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLKTDAQrltgLLFNRKVH 577
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 791 KALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSD--SLEPLIIEYAELTMDDILEANIGPDTPKESWD 868
Cdd:PRK09200 578 KIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDdrDLIDIVILMIDVYLEAVAEEYLLEKSLLEEWI 657
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 869 FEKLIakvqqycYLLNDLTPDLlksEGSSYEGLQDYLRARGRDAYLQKREIVEKQSpgLMKDAERFLILSNIDRLWKEHL 948
Cdd:PRK09200 658 YENLS-------FQLNEILSNT---NFPDKKEVVQFLLEEAEKQLKEKRNKLPSAT--LYNQFLRKVALKAIDQNWVEQV 725
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 949 QALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQPVRVKKDEE 1008
Cdd:PRK09200 726 DALQQLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFDKEGEI 785
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
102-995 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 746.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 102 SVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGE 181
Cdd:PRK12903 23 QINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDVQIIGGIILDLGSVAEMKTGE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 182 GKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITYSV-------- 253
Cdd:PRK12903 103 GKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAYACDITYSVhselgfdy 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 254 ---------EELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDiHYTVDEKQKTVLLTEQ 324
Cdd:PRK12903 183 lrdnmvsskEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKED-DYKIDEETKAISLTEK 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 325 GYEDAEEILDVKDLYD-PREQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLP 403
Cdd:PRK12903 262 GIKKANKFFKLKNLYDiENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 404 IQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKvcllsyalnlylkiqtvglhncs 483
Cdd:PRK12903 342 IEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRK----------------------- 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 484 psedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVER 563
Cdd:PRK12903 399 -------------DEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK--QNAR 463
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 564 EAEIVAQSGRLGAVTIATNMAGRGTDIILGgnaefmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpckl 643
Cdd:PRK12903 464 EAEIIAKAGQKGAITIATNMAGRGTDIKLS-------------------------------------------------- 493
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 644 snekaklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerKKVVEAGGLHV 723
Cdd:PRK12903 494 ---------------------------------------------------------------------KEVLELGGLYV 504
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 724 VGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIF-GGDRIQgmmRAF-RVEDLPIESKMLTKALDEAQRKVE 801
Cdd:PRK12903 505 LGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFsNFDKIK---EAFkKLGDDEIKSKFFSKALLNAQKKIE 581
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 802 NYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDtPKESWDFEKLIAKVQQ--Y 879
Cdd:PRK12903 582 GFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIADDLSHVIEKMISRAVEQILKNSFIIL-KNNTINYKELVEFLNDnlL 660
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 880 CYLLNDLTPDLLKSEgsSYEGLQDYLRARGRDAYLQKREIVEKQSPGLMKDA-ERFLILSNIDRLWKEHLQALKFVQQAV 958
Cdd:PRK12903 661 RITHFKFSEKDFENY--HKEELAQYLIEALNEIYFKKRQVILDKIALNTFFEsERYIILSALDKYWQNHIDTMDKLRSGV 738
|
890 900 910
....*....|....*....|....*....|....*..
gi 334186279 959 GLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSI 995
Cdd:PRK12903 739 NLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSL 775
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
99-1036 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 652.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 99 IVASVNRLETEISALSDSELRERTDALKQ----------------RAQKGES---------------------------M 135
Cdd:PRK12901 23 IVEKIKAEYPELEALSNDELRAKTDEFKQyikeavadidakieelKAEAIESldiderediyaqidklekeayeilekvL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 136 DSLLPEAFAVVREASKRVLG---------------------------------------------LRPFDVQLIGGMVLH 170
Cdd:PRK12901 103 DEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdaggneitwdMVHYDVQLIGGVVLH 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 171 KGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLI---QQNmtPEQRKENYLC 247
Cdd:PRK12901 183 QGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIdkhQPN--SEARRKAYNA 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 248 DITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQ------------YYKAA 298
Cdd:PRK12901 261 DITYgtnnefgfdylrdnmahSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDQefeelkprverlVEAQR 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 299 KIASAF---------ERD-------------------------------------------------------IHYTVDE 314
Cdd:PRK12901 341 KLATQFlaeakkliaEGDkkegglallrayrglpknkalikflseegikallqktenfymqdnnrempevdeeLYFVIDE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 315 KQKTVLLTEQGYED----------------AEEILDVKDLYDPREQ---------WASYVLNA---------IKAKELFL 360
Cdd:PRK12901 421 KNNSVELTDKGIDYitgndedpdffvlpdiGTELAEIENEGGLDEEeeaekkeelFQDYSVKServhtlnqlLKAYTLFE 500
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 361 RDVNYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 440
Cdd:PRK12901 501 KDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEF 580
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 441 ESIYKLKVTIVPTNKPMIRKvcllsyalnlylkiqtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRM 520
Cdd:PRK12901 581 WDIYKLDVVVIPTNRPIARK------------------------------------DKEDLVYKTKREKYNAVIEEITEL 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 521 HKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKPEnvEREAEIVAQSGRLGAVTIATNMAGRGTDIilggnaefma 600
Cdd:PRK12901 625 SEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH--QKEAEIVAEAGQPGTVTIATNMAGRGTDI---------- 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 601 rlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcKLSNEkaklaeeavqsaveawgqkslteleaeerlsysc 680
Cdd:PRK12901 693 -----------------------------------------KLSPE---------------------------------- 697
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 681 ekgpvqdevigklrtaflaiakeykgytdeerkkVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 760
Cdd:PRK12901 698 ----------------------------------VKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 761 IFRIFGGDRIQGMMRAFRVEDLP-IESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLE 839
Cdd:PRK12901 744 LMRLFGSERIAKVMDRMGLKEGEvIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLG 823
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 840 PLIIEyaelTMDDILEANIgpDTPKESWDFEKLIAKVQQYCYLLNDLTPDLLKSEGssYEGLQDYLRARGRDAYLQKREI 919
Cdd:PRK12901 824 MDIAN----MIYDVCEAIV--ENNKVANDYKGFKFELIRTLAMESPITEEEFNKLK--KDELTDKLYDAALENYQRKMER 895
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 920 V-------------------------------------------EKQSPGLMKDAERFLILSNIDRLWKEHLQALKFVQQ 956
Cdd:PRK12901 896 IaeiafpvikqvyeeqgnmyerivvpftdgkrtlnvvtnlkeayETEGKEIVKDFEKNITLHIIDEAWKEHLREMDELKQ 975
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 957 AVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIySI--------YQFQPVRVKKDEEKKSQNGKPSK-------QVD 1021
Cdd:PRK12901 976 SVQNASYEQKDPLLIYKFESFELFKNMVDKVNREVI-SFlfkgeipvQEAPEIREAAPERRLDPKYRTQKeeiqdsdQRA 1054
|
1210
....*....|....*
gi 334186279 1022 NASEKPKQVgVTDEP 1036
Cdd:PRK12901 1055 AASRDTGAQ-VKETP 1068
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
79-440 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 642.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 79 LSGIFkGSDNgESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRP 158
Cdd:smart00957 1 LKKLF-GSKN-DRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 159 FDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTP 238
Cdd:smart00957 79 FDVQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 239 EQRKENYLCDITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKP-SDQYYKAAKI 300
Cdd:smart00957 159 EERRAAYAADITYgtnnefgfdylrdnmafSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDEsSDLYHRADKF 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 301 ASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDP-REQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFT 379
Cdd:smart00957 239 VPRLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPeNIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFT 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 334186279 380 GRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 440
Cdd:smart00957 319 GRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
79-440 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 624.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 79 LSGIFkGSDNgESTRQQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRP 158
Cdd:pfam07517 1 LKKIF-GSPN-ERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 159 FDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTP 238
Cdd:pfam07517 79 YDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 239 EQRKENYLCDITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIA 301
Cdd:pfam07517 159 EERRAAYNADITYgtnnelgfdylrdnmatSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 302 SAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPR-EQWASYVLNAIKAKELFLRDVNYIIRAKEVLIVDEFTG 380
Cdd:pfam07517 239 KSLEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPEnVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTG 318
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 381 RVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEF 440
Cdd:pfam07517 319 RVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
95-820 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 604.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 95 QYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESM-DSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGE 173
Cdd:PRK12898 40 RQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFrDALLAEAFALVREASGRVLGQRHFDVQLMGGLALLSGR 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 174 IAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITY-- 251
Cdd:PRK12898 120 LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITYct 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 252 ----------------------------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQ--YY 295
Cdd:PRK12898 200 nkelvfdylrdrlalgqrasdarlaleslhgrssRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAevYR 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 296 KAAKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEIldVKDLyDPREQWAS----YVLNAIKAKELFLRDVNYIIRAKE 371
Cdd:PRK12898 280 QALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAEL--AESL-PPAWRGAVrreeLVRQALSALHLFRRDEHYIVRDGK 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 372 VLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIV 451
Cdd:PRK12898 357 VVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRI 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 452 PTNKPMIRKVcllsyalnlyLKIQtvglhncspsedlkfvyvglldesdvVFKAVNGKWRAVVVEISRMHKTGRAVLVGT 531
Cdd:PRK12898 437 PTNRPSQRRH----------LPDE--------------------------VFLTAAAKWAAVAARVRELHAQGRPVLVGT 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 532 TSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIilggnaefmarlklreilmpr 611
Cdd:PRK12898 481 RSVAASERLSALLREAGLPHQVLNAK--QDAEEAAIVARAGQRGRITVATNMAGRGTDI--------------------- 537
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 612 vvkptdgvfvsvkkappkrtwkvneklfpcKLSNEkaklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevig 691
Cdd:PRK12898 538 ------------------------------KLEPG--------------------------------------------- 542
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 692 klrtaflaiakeykgytdeerkkVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQ 771
Cdd:PRK12898 543 -----------------------VAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGSRGL 599
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 334186279 772 GMMRAfrVEDLPIESKMLTK-ALDEAQRKVENYFFDIRKQLFEFDEVLNS 820
Cdd:PRK12898 600 AIRRM--ELLGPRGGRALGAlLLRRAQRRAERLHARARRALLHADEQLDK 647
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
94-988 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 600.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 94 QQYASIVASVNRLETEISALSDSELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGE 173
Cdd:TIGR03714 7 KKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIVLHQGN 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 174 IAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGL-----IQQNMTPEQRKENYLCD 248
Cdd:TIGR03714 87 IAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLgvvddPDEEYDANEKRKIYNSD 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 249 ITY-----------------SVEELVLRDFNYCVIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIASAFERDIHYT 311
Cdd:TIGR03714 167 IVYttnsalgfdylidnlasNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYI 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 312 VDEKQKTVLLTEQGYEDAEEILDVKDLYdpREQWASYV--LN-AIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQGRRW 388
Cdd:TIGR03714 247 FKKDKKEVWLTDKGIEKAEQYFKIDNLY--SEEYFELVrhINlALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 389 SDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKvcllsyal 468
Cdd:TIGR03714 325 QSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRI-------- 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 469 nlylkiqtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAG 548
Cdd:TIGR03714 397 ----------------------------DYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 549 ITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGgnaefmarlklreilmprvvkptdgvfvsvkkapp 628
Cdd:TIGR03714 449 IPHNLLNAQ--NAAKEAQIIAEAGQKGAVTVATSMAGRGTDIKLG----------------------------------- 491
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 629 krtwkvneklfpcklsnekaklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgyt 708
Cdd:TIGR03714 --------------------------------------------------------------------------------
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 709 deerKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGMMRAFRVEDLPIESKM 788
Cdd:TIGR03714 492 ----KGVAELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKDSKLKPSA 567
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 789 L-----TKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEpliieyaELTMDDILEANIGPDTP 863
Cdd:TIGR03714 568 LfkrrfRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEGSDFL-------DDDVDQIIDDVFNMYAE 640
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 864 KESWDFEKLIAK--VQQYCYLLNDLtPDLLKSEGSsyEGLQDYLRARGRDAYLQKREIVekQSPGLMKDAERFLILSNID 941
Cdd:TIGR03714 641 EQDLSNKSLLKRfiLENLSYQFKND-PDEFDLKNK--EAIKDFLKEIADKELSEKKKVL--NNDYLFNDFERLSILKAID 715
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|
gi 334186279 942 RLWKE---HLQALKFVqqaVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIR 988
Cdd:TIGR03714 716 ENWIEqvdYLQQLKTV---VTNRQNGQRNPIFEYHKEALESYEYMKKEIK 762
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
89-1007 |
8.80e-160 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 490.49 E-value: 8.80e-160
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 89 GESTRQQYAS--IVASVNRLETEISALSDSELRERTDALKQraqKGESMDslLPEAFAVVREASKRVLGLRPFDVQLIGG 166
Cdd:TIGR04221 11 SSTERNQKRSlaIVPAAASRMKELSALDDEELTKAARDLVL---SGEAAD--AAQFLAILREAAERTLGMRPFDVQLLGA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 167 MVLHKGEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYL 246
Cdd:TIGR04221 86 LRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERRAAYA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 247 CDITY-SVEEL---VLRD-------------FNYCVIDEVDSILIDEARTPLIISG--PAEKPSdqyYKAAKIASAFERD 307
Cdd:TIGR04221 166 CDVTYaSVNEIgfdVLRDqlvtdradlvqpaADVALIDEADSVLVDEALVPLVLAGnePGEAPR---GRITDLVRRLRED 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 308 IHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPREQWASYV-LN-AIKAKELFLRDVNYIIRAKEVLIVDEFTGRVMQG 385
Cdd:TIGR04221 243 KHYTVDEDGRNVHLTEDGARAVEAELGIDDLYSEEHVGTTLVqVNvALHAHALLIRDVHYIVRDGKVALIDASRGRVAQL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 386 RRWSDGLHQAVEAKEGLPIQNESITLASISYQNFFLQFPKLCGMTGTASTESAEFESIYKLKVTIVPTNKPMIRKvclls 465
Cdd:TIGR04221 323 QRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPNIRF----- 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 466 yalnlylkiqtvglhncspsedlkfvyvgllDESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLR 545
Cdd:TIGR04221 398 -------------------------------DEADRVYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALL 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 546 EAGITHEVLNAKpeNVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEfmarlklreilmprvvkptdgvfvsvkk 625
Cdd:TIGR04221 447 EAGVPCNVLNAK--NDAEEAAIIAEAGDIGAVTVSTQMAGRGTDIRLGGSDE---------------------------- 496
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 626 appkrtwkvneklfpcklsnekaklaeeavqsaveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeyk 705
Cdd:TIGR04221 --------------------------------------------------------------------------------
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 706 gyTDEERkkVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFG-GDRIQGMMRafrvEDLPI 784
Cdd:TIGR04221 497 --ADHDR--VAELGGLHVIGTGRHRTARLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAVGGaGETVPAQPA----EDGRI 568
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 785 ESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSlepliieyaeltmddileanigpdtpk 864
Cdd:TIGR04221 569 ESPRVQDFVDHAQRVAEGQLLEIHANTWRYNQLIAQQRDIIDERRETLLDTDT--------------------------- 621
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 865 eSWDfekliakvqqycyLLNDLTPDllksegssyeglqdylrargrdaylQKREIVEKQSPGLMKDAERFLILSNIDRLW 944
Cdd:TIGR04221 622 -AWQ-------------ELSERAAD-------------------------RAAELKKEVSEDALERAAREIMLYHLDRGW 662
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 334186279 945 KEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNviySIYQFQPVRVKKDE 1007
Cdd:TIGR04221 663 AEHLAYLDDVRESIHLRALGRETPLDEFHRMAVRAFKELAQRAVDK---AVETFEEVEIDADG 722
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
117-453 |
7.82e-117 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 358.77 E-value: 7.82e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 117 ELRERTDALKQRAQKGESMDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAILPAYLNAL 196
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 197 SGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTPEQRKENYLCDITY-----------------SVEELVLR 259
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYgtnnelgfdylrdnmvtSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 260 DFNYCVIDEVDSILIDEARTPLIISGpaekpsdqyykaakiasaferdihytvdekqktvllteqgyedaeeildvkdly 339
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 340 dpreqwasyvlnaikakelflrdvnyiirakevlivdeftgrvmqgrrwsdglhqaveakeglpiqnesiTLASISYQNF 419
Cdd:cd17928 187 ----------------------------------------------------------------------TLATITFQNY 196
|
330 340 350
....*....|....*....|....*....|....
gi 334186279 420 FLQFPKLCGMTGTASTESAEFESIYKLKVTIVPT 453
Cdd:cd17928 197 FRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
783-999 |
3.87e-77 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 251.64 E-value: 3.87e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 783 PIESKMLTKALDEAQRKVENYFFDIRKQLFEFDEVLNSQRDRVYTERRRALVSDSLEPLIIEYAELTMDDILEANIGPDT 862
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 863 PKESWDFEKLIAKVQQYcYLLNDLTPDLLKSEGSSYEGLQDYLRARGRDAYLQKREIVekqSPGLMKDAERFLILSNIDR 942
Cdd:pfam07516 81 SPEEWDLEGLKEALNEI-FGLELPISEWEEEEDLDKEELKERLLEAAEEAYEEKEEEI---GPELMRELERVVLLQVIDS 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 334186279 943 LWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLEMMAQIRRNVIYSIYQFQ 999
Cdd:pfam07516 157 KWKEHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
497-756 |
8.34e-68 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 223.20 E-value: 8.34e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 497 DESDVVFKAVNGKWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKpeNVEREAEIVAQSGRLGA 576
Cdd:cd18803 3 DLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAK--NHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 577 VTIATNMAGRGTDIILGGNAEfmarlklreilmprvvkptdgvfvsvkkappkrtwkvneklfpcklsnekaklaeeavq 656
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGNVE----------------------------------------------------------- 101
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 657 saveawgqkslteleaeerlsyscekgpvqdevigklrtaflaiakeykgytdeerkkvvEAGGLHVVGTERHESRRIDN 736
Cdd:cd18803 102 ------------------------------------------------------------ELGGLHVIGTERHESRRIDN 121
|
250 260
....*....|....*....|
gi 334186279 737 QLRGRSGRQGDPGSSRFFLS 756
Cdd:cd18803 122 QLRGRAGRQGDPGSSRFYLS 141
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
289-397 |
7.22e-52 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 177.22 E-value: 7.22e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 289 KPSDQYYKAAKIASAFERDIHYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDVNYII 367
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDEDYEVDEKAKTVELTEEGIEKAEKLLGIDNLYDPENiELVHHINQALKAHHLFKRDVDYIV 80
|
90 100 110
....*....|....*....|....*....|
gi 334186279 368 RAKEVLIVDEFTGRVMQGRRWSDGLHQAVE 397
Cdd:pfam01043 81 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
286-397 |
1.21e-50 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 173.79 E-value: 1.21e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 286 PAEKPSDQYYKAAKIASAFERDI-HYTVDEKQKTVLLTEQGYEDAEEILDVKDLYDPRE-QWASYVLNAIKAKELFLRDV 363
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKDEeDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPENiELVHHVNQALRAHKLFKRDV 80
|
90 100 110
....*....|....*....|....*....|....
gi 334186279 364 NYIIRAKEVLIVDEFTGRVMQGRRWSDGLHQAVE 397
Cdd:smart00958 81 DYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
170-282 |
8.66e-15 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 72.44 E-value: 8.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 170 HKGEIAEMRTGEGKTLVAILPAYLNALS-GKGVHVVTVNDYLARRDCEWVgQVPRFLGLKVGLIQQNMTPEQRKEN--YL 246
Cdd:cd00046 1 GENVLITAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERL-RELFGPGIRVAVLVGGSSAEEREKNklGD 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 334186279 247 CDITY-----------SVEELVLRDFNYCVIDEVDSILIDEARTPLI 282
Cdd:cd00046 80 ADIIIatpdmllnlllREDRLFLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
172-282 |
1.35e-09 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 55.60 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 172 GEIAEMRTGEGKTLVAILPAYLNALSGKGVHVVTVNDYLARRDcewvgqvprflglkvgliqqnmtpeqrkenylcdity 251
Cdd:cd17912 1 NILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI------------------------------------- 43
|
90 100 110
....*....|....*....|....*....|.
gi 334186279 252 sveelvlrdfnYCVIDEVDSILIDEARTPLI 282
Cdd:cd17912 44 -----------LIVIDEIQ*ILDPAAGWAWA 63
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
719-754 |
1.47e-06 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 46.39 E-value: 1.47e-06
10 20 30
....*....|....*....|....*....|....*.
gi 334186279 719 GGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFF 754
Cdd:cd09300 23 ELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| SSL2 |
COG1061 |
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; |
511-590 |
3.50e-04 |
|
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
Pssm-ID: 440681 [Multi-domain] Cd Length: 566 Bit Score: 44.63 E-value: 3.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 511 RAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKPENVEREaEIVAQ--SGRLgAVTIATNMAGRGT 588
Cdd:COG1061 292 DKILRELLREHPDDRKTLVFCSSVDHAEALAELLNEAGIRAAVVTGDTPKKERE-EILEAfrDGEL-RILVTVDVLNEGV 369
|
..
gi 334186279 589 DI 590
Cdd:COG1061 370 DV 371
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
151-283 |
8.19e-04 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 41.71 E-value: 8.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 151 KRVLGLRPFDVQLIGGMVLHKGE---IAEMRTGEGKTLVAILPAYLNALSGKGVHVV-------TVNDyLARRDCEWVgq 220
Cdd:smart00487 2 EKFGFEPLRPYQKEAIEALLSGLrdvILAAPTGSGKTLAALLPALEALKRGKGGRVLvlvptreLAEQ-WAEELKKLG-- 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 334186279 221 vPRFLGLKVGLIQQNMTPEQRKE--NYLCDITYS----------VEELVLRDFNYCVIDEVDSILiDEARTPLII 283
Cdd:smart00487 79 -PSLGLKVVGLYGGDSKREQLRKleSGKTDILVTtpgrlldlleNDKLSLSNVDLVILDEAHRLL-DGGFGDQLE 151
|
|
| SF2_C_DEAD |
cd18787 |
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse ... |
509-590 |
1.34e-03 |
|
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis, and RNA degradation. They are superfamily (SF)2 helicases that, similar to SF1, do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350174 [Multi-domain] Cd Length: 131 Bit Score: 39.80 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 509 KWRAVVVEISRMHKTGRaVLVGTTSVEQSDELSQLLREAGITHEVLNAKPENVEREaEIVAQ--SGRLGaVTIATNMAGR 586
Cdd:cd18787 13 KKLLLLLLLLEKLKPGK-AIIFVNTKKRVDRLAELLEELGIKVAALHGDLSQEERE-RALKKfrSGKVR-VLVATDVAAR 89
|
....
gi 334186279 587 GTDI 590
Cdd:cd18787 90 GLDI 93
|
|
| DEAD |
pfam00270 |
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. ... |
174-273 |
1.55e-03 |
|
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Pssm-ID: 425570 [Multi-domain] Cd Length: 165 Bit Score: 40.30 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186279 174 IAEMRTGEGKTLVAILPAyLNALSGKGVHVVTVndYLA--R-------RDCEWVGQvprFLGLKVGLIQQNMTP-EQRKE 243
Cdd:pfam00270 18 LVQAPTGSGKTLAFLLPA-LEALDKLDNGPQAL--VLAptRelaeqiyEELKKLGK---GLGLKVASLLGGDSRkEQLEK 91
|
90 100 110
....*....|....*....|....*....|....*....
gi 334186279 244 NYLCDITYS---------VEELVLRDFNYCVIDEVDSIL 273
Cdd:pfam00270 92 LKGPDILVGtpgrlldllQERKLLKNLKLLVLDEAHRLL 130
|
|
| |
