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Conserved domains on  [gi|334186823|ref|NP_001190803|]
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YCF49-like protein [Arabidopsis thaliana]

Protein Classification

DUF2499 domain-containing protein( domain architecture ID 10566449)

DUF2499 domain-containing protein similar to Synechocystis sp. YCF49-like protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2499 pfam10693
Protein of unknown function (DUF2499); Members of this family are found in plants, lower ...
 100-186 1.38e-48

Protein of unknown function (DUF2499); Members of this family are found in plants, lower eukaryotes, and bacteria and the chloroplast where it is annotated as Ycf49 or Ycf49-like. The function is not known though several members are annotated as putative membrane proteins.


:

Pssm-ID: 463178  Cd Length: 87  Bit Score: 153.12  E-value: 1.38e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186823  100 LSLPTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDESLEVLVALQAALTVFGNI 179
Cdd:pfam10693   1 LSLPTWIIHISSVLEWLAAIWLIWRYGEVTGNRAWRGLALAMLPALVSAMCACTWHLFDNAPSLEWLVTLQAALTLVGNC 80


                  ....*..
gi 334186823  180 TLCIAAF 186
Cdd:pfam10693  81 TLAAAAW 87
 
Name Accession Description Interval E-value
DUF2499 pfam10693
Protein of unknown function (DUF2499); Members of this family are found in plants, lower ...
 100-186 1.38e-48

Protein of unknown function (DUF2499); Members of this family are found in plants, lower eukaryotes, and bacteria and the chloroplast where it is annotated as Ycf49 or Ycf49-like. The function is not known though several members are annotated as putative membrane proteins.


Pssm-ID: 463178  Cd Length: 87  Bit Score: 153.12  E-value: 1.38e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186823  100 LSLPTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDESLEVLVALQAALTVFGNI 179
Cdd:pfam10693   1 LSLPTWIIHISSVLEWLAAIWLIWRYGEVTGNRAWRGLALAMLPALVSAMCACTWHLFDNAPSLEWLVTLQAALTLVGNC 80


                  ....*..
gi 334186823  180 TLCIAAF 186
Cdd:pfam10693  81 TLAAAAW 87
 
Name Accession Description Interval E-value
DUF2499 pfam10693
Protein of unknown function (DUF2499); Members of this family are found in plants, lower ...
 100-186 1.38e-48

Protein of unknown function (DUF2499); Members of this family are found in plants, lower eukaryotes, and bacteria and the chloroplast where it is annotated as Ycf49 or Ycf49-like. The function is not known though several members are annotated as putative membrane proteins.


Pssm-ID: 463178  Cd Length: 87  Bit Score: 153.12  E-value: 1.38e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 334186823  100 LSLPTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLGGALCACTWHFFYNDESLEVLVALQAALTVFGNI 179
Cdd:pfam10693   1 LSLPTWIIHISSVLEWLAAIWLIWRYGEVTGNRAWRGLALAMLPALVSAMCACTWHLFDNAPSLEWLVTLQAALTLVGNC 80


                  ....*..
gi 334186823  180 TLCIAAF 186
Cdd:pfam10693  81 TLAAAAW 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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