NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|323276603|ref|NP_001190983|]
View 

NADH dehydrogenase [ubiquinone] 1 subunit C2 isoform 2 [Homo sapiens]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NDUF_C2 super family cl05723
NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several ...
 10-80 7.61e-29

NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins (EC:1.6.5.3).


The actual alignment was detected with superfamily member pfam06374:

Pssm-ID: 428908  Cd Length: 109  Bit Score: 99.30  E-value: 7.61e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 323276603   10 LRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATaGLHRQLLYITAFFFAGYYLVKLEAY 80
Cdd:pfam06374   1 LELLPDEGRSLPPPLLDDWNPLYGGFLGFGAALLVNWGRRRPVLS-GIHRHILFATIGGFLGYYLDKRRNY 70
 
Name Accession Description Interval E-value
NDUF_C2 pfam06374
NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several ...
 10-80 7.61e-29

NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins (EC:1.6.5.3).


Pssm-ID: 428908  Cd Length: 109  Bit Score: 99.30  E-value: 7.61e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 323276603   10 LRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATaGLHRQLLYITAFFFAGYYLVKLEAY 80
Cdd:pfam06374   1 LELLPDEGRSLPPPLLDDWNPLYGGFLGFGAALLVNWGRRRPVLS-GIHRHILFATIGGFLGYYLDKRRNY 70
 
Name Accession Description Interval E-value
NDUF_C2 pfam06374
NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several ...
 10-80 7.61e-29

NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins (EC:1.6.5.3).


Pssm-ID: 428908  Cd Length: 109  Bit Score: 99.30  E-value: 7.61e-29
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 323276603   10 LRFLPDEARSLPPPKLTDPRLLYIGFLGYCSGLIDNLIRRRPIATaGLHRQLLYITAFFFAGYYLVKLEAY 80
Cdd:pfam06374   1 LELLPDEGRSLPPPLLDDWNPLYGGFLGFGAALLVNWGRRRPVLS-GIHRHILFATIGGFLGYYLDKRRNY 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH