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Conserved domains on  [gi|342672096|ref|NP_001230169|]
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calcium channel flower homolog isoform 3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cg6151-P super family cl10918
Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue ...
 34-106 1.02e-26

Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue long, proteins which are named as CG6151-P proteins that are conserved from fungi to humans. The function is unknown. The fungal members have a characteriztic ICP sequence motif. Some members are annotated as putative clathrin-coated vesicle protein but this could not be defined.


The actual alignment was detected with superfamily member smart01077:

Pssm-ID: 448032  Cd Length: 111  Bit Score: 94.64  E-value: 1.02e-26
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 342672096    34 GVLGAVSCAISGLFNCVTIHPLNIAAGVWMIMNAFILLLCEAPFCCQFVEFANTVAEKVDRLRS-WQKAVFYCG 106
Cdd:smart01077   1 GILGIFLCIALGIANIFHFSVVCIVFGILMIVQGFVLLFIEAPFLLKICPFSDKFAEFIDKFDTnWQRAAFYCG 74
 
Name Accession Description Interval E-value
Cg6151-P smart01077
Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue ...
 34-106 1.02e-26

Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue long, proteins which are named as CG6151-P proteins that are conserved from fungi to humans. The function is unknown. The fungal members have a characteristic ICP sequence motif. Some members are annotated as putative clathrin-coated vesicle protein but this could not be defined.


Pssm-ID: 198145  Cd Length: 111  Bit Score: 94.64  E-value: 1.02e-26
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 342672096    34 GVLGAVSCAISGLFNCVTIHPLNIAAGVWMIMNAFILLLCEAPFCCQFVEFANTVAEKVDRLRS-WQKAVFYCG 106
Cdd:smart01077   1 GILGIFLCIALGIANIFHFSVVCIVFGILMIVQGFVLLFIEAPFLLKICPFSDKFAEFIDKFDTnWQRAAFYCG 74
Cg6151-P pfam10233
Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue ...
 33-106 2.20e-20

Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue long, proteins which are named as CG6151-P proteins that are conserved from fungi to humans. The function is unknown. The fungal members have a characteriztic ICP sequence motif. Some members are annotated as putative clathrin-coated vesicle protein but this could not be defined.


Pssm-ID: 431157  Cd Length: 113  Bit Score: 78.72  E-value: 2.20e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 342672096   33 AGVLGAVSCAISGLFNCVTIHPLNIAAGVWMIMNAFILLLCEAPFCCQFVEFANTVAEKVDRL-RSWQKAVFYCG 106
Cdd:pfam10233   1 LGILSIILCIALGIANIFTFSVVCIIFGILCIVSGFIVLFIEVPFLLRICPTSDKFDAFIRKFeTNWMRAAFYLV 75
 
Name Accession Description Interval E-value
Cg6151-P smart01077
Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue ...
 34-106 1.02e-26

Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue long, proteins which are named as CG6151-P proteins that are conserved from fungi to humans. The function is unknown. The fungal members have a characteristic ICP sequence motif. Some members are annotated as putative clathrin-coated vesicle protein but this could not be defined.


Pssm-ID: 198145  Cd Length: 111  Bit Score: 94.64  E-value: 1.02e-26
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 342672096    34 GVLGAVSCAISGLFNCVTIHPLNIAAGVWMIMNAFILLLCEAPFCCQFVEFANTVAEKVDRLRS-WQKAVFYCG 106
Cdd:smart01077   1 GILGIFLCIALGIANIFHFSVVCIVFGILMIVQGFVLLFIEAPFLLKICPFSDKFAEFIDKFDTnWQRAAFYCG 74
Cg6151-P pfam10233
Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue ...
 33-106 2.20e-20

Uncharacterized conserved protein CG6151-P; This is a family of small, less than 200 residue long, proteins which are named as CG6151-P proteins that are conserved from fungi to humans. The function is unknown. The fungal members have a characteriztic ICP sequence motif. Some members are annotated as putative clathrin-coated vesicle protein but this could not be defined.


Pssm-ID: 431157  Cd Length: 113  Bit Score: 78.72  E-value: 2.20e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 342672096   33 AGVLGAVSCAISGLFNCVTIHPLNIAAGVWMIMNAFILLLCEAPFCCQFVEFANTVAEKVDRL-RSWQKAVFYCG 106
Cdd:pfam10233   1 LGILSIILCIALGIANIFTFSVVCIIFGILCIVSGFIVLFIEVPFLLRICPTSDKFDAFIRKFeTNWMRAAFYLV 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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