|
Name |
Accession |
Description |
Interval |
E-value |
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
43-729 |
0e+00 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 575.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 43 AGKIAGAGLLFVGGGIGGTILYAKWDSHFRESVEKTIPYSDKLFGMVLGSAPYTVPlpkKPVQSGPLKISSVSEVMKDSK 122
Cdd:pfam09731 4 FGKFFVALVLIVGVGYGGVVLYAYKDDNFRDFFEEYIPYGEEVVLYALGEDPPLAP---KPKTFRPLQPSVVSAVTGESK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 123 LPVAQSQKTKGDTPASAAGDTLSVPAPAVQHEDTIKtecpntnegkstsetteeafsssvrerppeevaarlAQQEKQEQ 202
Cdd:pfam09731 81 EPKEEKKQVKIPRQSGVSSEVAEEEKEATKDAAEAK------------------------------------AQLPKSEQ 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 203 VEMESLAKSLEDALNRTSSVTLQTITAQNAAVQAVKAHSNILKTAMDNSEIAGEKKSAQWRTVEGALKerrkavdeaada 282
Cdd:pfam09731 125 EKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKAEALA------------ 192
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 283 llkakeelEKMKTIIEDAKKREIAGATPHITAAEGRLHNMIVDLDNVVKKVQAAQSEAKVVSQYHELVVQARDDFRKELD 362
Cdd:pfam09731 193 --------EKLKEVINLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQQELV 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 363 SITPDITPGWKGMtGKLSTDDLNSLIAHAHRRIDQLNRELAQQKATEKQHIELALEKHKlEEKRTFDSAVAKALEHHRS- 441
Cdd:pfam09731 265 SIFPDIIPVLKED-NLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIERALEKQK-EELDKLAEELSARLEEVRAa 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 442 ---EIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHTDHLRDVLKVQEQELKYEFEQGLSEKLSEQElefrrrsqeqmDSF 518
Cdd:pfam09731 343 deaQLRLEFEREREEIRESYEEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEER-----------AGR 411
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 519 TLDINTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTSSAEMPTIPLGSAVEAIRVNCSDNEFTQALTAA 598
Cdd:pfam09731 412 LLKLNELLANLKGLEKATSSHSEVEDENRKAQQLWLAVEALRSTLEDGSADSRPRPLVRELKALKELASDDEVVKAALAS 491
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 599 IPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFPPKQlkppAELYPEDINTFKLLSYAS 678
Cdd:pfam09731 492 LPEEAYQRGVYTEAALRERFRRVAKEVRKVSLIDPEGAGLLSHALSYLLSKLMFKPKQ----GEADPAGDDVESILARAE 567
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 358439528 679 YCIEHGDLELAAKFVNQLKGESRRVAQDWLKEARMTLETKQIVEILTAYAS 729
Cdd:pfam09731 568 YYLEEGDLDSAAREMNSLKGWSKKLASDWLKEARRRLEVQQALELLQAEAA 618
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
185-560 |
2.03e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 185 RPPEEVAARLAQQEKQEQVEMESLAKSLEDALNRTSSVTLQTITAQnaavQAVKAHSniLKTAMDNSEIAGEKKSAQWRT 264
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE----EARKADE--LKKAEEKKKADEAKKAEEKKK 1303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 265 VEGALK--ERRKAVDEAADALLKAKEELEKMKTIIEDAK------KREIAGATPHITAAEGRLHNMIVDLDNVVKKVQAA 336
Cdd:PTZ00121 1304 ADEAKKkaEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaeaaKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 337 QSEAKVVSQYHELVVQARDDfRKELDSITpditpgwKGMTGKLSTDDLNSLiAHAHRRIDQLNR--------ELAQQKAT 408
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEED-KKKADELK-------KAAAAKKKADEAKKK-AEEKKKADEAKKkaeeakkaDEAKKKAE 1454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 409 EKQHIELAleKHKLEEKRTFDSAVAKALEHHRSE----IQAEQDRKVEEVRDAMENEMRTQLRRQA--AAHTDHLRDV-L 481
Cdd:PTZ00121 1455 EAKKAEEA--KKKAEEAKKADEAKKKAEEAKKADeakkKAEEAKKKADEAKKAAEAKKKADEAKKAeeAKKADEAKKAeE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 482 KVQEQELKYEFEQGLSEKLSEQElEFRR----RSQEQMDSFTLDINTAYAR---LRGIEQA---------VQSHAVAEEE 545
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAE-ELKKaeekKKAEEAKKAEEDKNMALRKaeeAKKAEEArieevmklyEEEKKMKAEE 1611
|
410
....*....|....*
gi 358439528 546 ARKAHQLWLSVEALK 560
Cdd:PTZ00121 1612 AKKAEEAKIKAEELK 1626
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
260-560 |
2.36e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 260 AQWRTVEGALKERRKAVDEAADALLKAKEELEKMKTIIEDAKKReiagatphITAAEGRLHNMIVDLDNVVKKVQAAQSE 339
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE--------LEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 340 akvvsqyHELVVQARDDFRKELDSItpditpgwkgmtgklsTDDLNSLIAHAHRRIDQLNRELAQQKATEKQHIELALEK 419
Cdd:COG1196 304 -------IARLEERRRELEERLEEL----------------EEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 420 HKLEEKRtfdSAVAKALEHHRSEIQAEQDRKVEEVRDAME-----NEMRTQLRRQAAAHTDHLRDVLKVQEQELKYEFEQ 494
Cdd:COG1196 361 AEAEEAL---LEAEAELAEAEEELEELAEELLEALRAAAElaaqlEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 358439528 495 GLSEKLSEQELEFRRRSQEQMDSFTLDINTAYARLRGIEQAVQshAVAEEEARKAHQLWLSVEALK 560
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA--ELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
209-538 |
2.33e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 209 AKSLEDALN-------RTSSVTLQ--TITAQNAAVQA-VKAHSNILKTamdNSEIagEKKSAQWRTVEGALKERRKAVDE 278
Cdd:TIGR02168 628 VDDLDNALElakklrpGYRIVTLDgdLVRPGGVITGGsAKTNSSILER---RREI--EELEEKIEELEEKIAELEKALAE 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 279 AADALLKAKEELEKMKTIIEDaKKREIAGATPHITAAEGRLHNMIVDLDNVVKKVQAAQSEAKVVSQYHELVVQARDDFR 358
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEE-LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 359 KELDSITPDITpgwkgmTGKLSTDDLNSLIAHAHRRIDQLNRELAQQK-----------ATEKQHIELALEK-------- 419
Cdd:TIGR02168 782 AEIEELEAQIE------QLKEELKALREALDELRAELTLLNEEAANLRerleslerriaATERRLEDLEEQIeelsedie 855
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 420 ---HKLEEKRTFDSAVAKALEHHrSEIQAEQDRKVEEVRDAMENEM---------RTQLRRQAAAHTDHLRDvLKVQEQE 487
Cdd:TIGR02168 856 slaAEIEELEELIEELESELEAL-LNERASLEEALALLRSELEELSeelreleskRSELRRELEELREKLAQ-LELRLEG 933
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 358439528 488 LKYEFEQgLSEKLSEQ---ELEFrrrSQEQMDSFTLDINTAYARLRGIEQAVQS 538
Cdd:TIGR02168 934 LEVRIDN-LQERLSEEyslTLEE---AEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
43-729 |
0e+00 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 575.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 43 AGKIAGAGLLFVGGGIGGTILYAKWDSHFRESVEKTIPYSDKLFGMVLGSAPYTVPlpkKPVQSGPLKISSVSEVMKDSK 122
Cdd:pfam09731 4 FGKFFVALVLIVGVGYGGVVLYAYKDDNFRDFFEEYIPYGEEVVLYALGEDPPLAP---KPKTFRPLQPSVVSAVTGESK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 123 LPVAQSQKTKGDTPASAAGDTLSVPAPAVQHEDTIKtecpntnegkstsetteeafsssvrerppeevaarlAQQEKQEQ 202
Cdd:pfam09731 81 EPKEEKKQVKIPRQSGVSSEVAEEEKEATKDAAEAK------------------------------------AQLPKSEQ 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 203 VEMESLAKSLEDALNRTSSVTLQTITAQNAAVQAVKAHSNILKTAMDNSEIAGEKKSAQWRTVEGALKerrkavdeaada 282
Cdd:pfam09731 125 EKEKALEEVLKEAISKAESATAVAKEAKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKAEALA------------ 192
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 283 llkakeelEKMKTIIEDAKKREIAGATPHITAAEGRLHNMIVDLDNVVKKVQAAQSEAKVVSQYHELVVQARDDFRKELD 362
Cdd:pfam09731 193 --------EKLKEVINLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEKAQSLAKLVDQYKELVASERIVFQQELV 264
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 363 SITPDITPGWKGMtGKLSTDDLNSLIAHAHRRIDQLNRELAQQKATEKQHIELALEKHKlEEKRTFDSAVAKALEHHRS- 441
Cdd:pfam09731 265 SIFPDIIPVLKED-NLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIERALEKQK-EELDKLAEELSARLEEVRAa 342
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 442 ---EIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHTDHLRDVLKVQEQELKYEFEQGLSEKLSEQElefrrrsqeqmDSF 518
Cdd:pfam09731 343 deaQLRLEFEREREEIRESYEEKLRTELERQAEAHEEHLKDVLVEQEIELQREFLQDIKEKVEEER-----------AGR 411
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 519 TLDINTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTSSAEMPTIPLGSAVEAIRVNCSDNEFTQALTAA 598
Cdd:pfam09731 412 LLKLNELLANLKGLEKATSSHSEVEDENRKAQQLWLAVEALRSTLEDGSADSRPRPLVRELKALKELASDDEVVKAALAS 491
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 599 IPPESLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLLFPPKQlkppAELYPEDINTFKLLSYAS 678
Cdd:pfam09731 492 LPEEAYQRGVYTEAALRERFRRVAKEVRKVSLIDPEGAGLLSHALSYLLSKLMFKPKQ----GEADPAGDDVESILARAE 567
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|.
gi 358439528 679 YCIEHGDLELAAKFVNQLKGESRRVAQDWLKEARMTLETKQIVEILTAYAS 729
Cdd:pfam09731 568 YYLEEGDLDSAAREMNSLKGWSKKLASDWLKEARRRLEVQQALELLQAEAA 618
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
185-560 |
2.03e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 185 RPPEEVAARLAQQEKQEQVEMESLAKSLEDALNRTSSVTLQTITAQnaavQAVKAHSniLKTAMDNSEIAGEKKSAQWRT 264
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE----EARKADE--LKKAEEKKKADEAKKAEEKKK 1303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 265 VEGALK--ERRKAVDEAADALLKAKEELEKMKTIIEDAK------KREIAGATPHITAAEGRLHNMIVDLDNVVKKVQAA 336
Cdd:PTZ00121 1304 ADEAKKkaEEAKKADEAKKKAEEAKKKADAAKKKAEEAKkaaeaaKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 337 QSEAKVVSQYHELVVQARDDfRKELDSITpditpgwKGMTGKLSTDDLNSLiAHAHRRIDQLNR--------ELAQQKAT 408
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEED-KKKADELK-------KAAAAKKKADEAKKK-AEEKKKADEAKKkaeeakkaDEAKKKAE 1454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 409 EKQHIELAleKHKLEEKRTFDSAVAKALEHHRSE----IQAEQDRKVEEVRDAMENEMRTQLRRQA--AAHTDHLRDV-L 481
Cdd:PTZ00121 1455 EAKKAEEA--KKKAEEAKKADEAKKKAEEAKKADeakkKAEEAKKKADEAKKAAEAKKKADEAKKAeeAKKADEAKKAeE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 482 KVQEQELKYEFEQGLSEKLSEQElEFRR----RSQEQMDSFTLDINTAYAR---LRGIEQA---------VQSHAVAEEE 545
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAE-ELKKaeekKKAEEAKKAEEDKNMALRKaeeAKKAEEArieevmklyEEEKKMKAEE 1611
|
410
....*....|....*
gi 358439528 546 ARKAHQLWLSVEALK 560
Cdd:PTZ00121 1612 AKKAEEAKIKAEELK 1626
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
260-560 |
2.36e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 2.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 260 AQWRTVEGALKERRKAVDEAADALLKAKEELEKMKTIIEDAKKReiagatphITAAEGRLHNMIVDLDNVVKKVQAAQSE 339
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE--------LEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 340 akvvsqyHELVVQARDDFRKELDSItpditpgwkgmtgklsTDDLNSLIAHAHRRIDQLNRELAQQKATEKQHIELALEK 419
Cdd:COG1196 304 -------IARLEERRRELEERLEEL----------------EEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 420 HKLEEKRtfdSAVAKALEHHRSEIQAEQDRKVEEVRDAME-----NEMRTQLRRQAAAHTDHLRDVLKVQEQELKYEFEQ 494
Cdd:COG1196 361 AEAEEAL---LEAEAELAEAEEELEELAEELLEALRAAAElaaqlEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 358439528 495 GLSEKLSEQELEFRRRSQEQMDSFTLDINTAYARLRGIEQAVQshAVAEEEARKAHQLWLSVEALK 560
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA--ELLEELAEAAARLLLLLEAEA 501
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
148-552 |
3.48e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 3.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 148 APAVQHEDTIKTECPNTNEGKSTSETTEEAFSSSVRERPPEEVAARLAQQEKQEQvemESLAKSLEDALNRTSSVTLQTI 227
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA---EAAADEAEAAEEKAEAAEKKKE 1374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 228 TAQNAAVQAVKAHSNILKTAMDNSEIAGEKKSAQwrTVEGALKERRKAvDEA---ADALLKAKEelekMKTIIEDAKKRE 304
Cdd:PTZ00121 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD--ELKKAAAAKKKA-DEAkkkAEEKKKADE----AKKKAEEAKKAD 1447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 305 IAGAtphiTAAEGRLHNMIVDLDNVVKKVQAAQSEAKVVSQYHELVVQArDDFRKELDSITpditpgwKGMTGKLSTDDL 384
Cdd:PTZ00121 1448 EAKK----KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKA-EEAKKKADEAK-------KAAEAKKKADEA 1515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 385 NSliAHAHRRIDQLnrelaqQKATEKQHIElalEKHKLEEKRTFDSaVAKALEHHRseiqAEQDRKVEEVRDAMENEMRT 464
Cdd:PTZ00121 1516 KK--AEEAKKADEA------KKAEEAKKAD---EAKKAEEKKKADE-LKKAEELKK----AEEKKKAEEAKKAEEDKNMA 1579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 465 QLRRQAAAHTDHLR--DVLKVQEQELKYEFEQGLSEKLSEQELEFRRRSQEQMDSFTLDINTAYARLRGIEQ-------- 534
Cdd:PTZ00121 1580 LRKAEEAKKAEEARieEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEElkkaeeen 1659
|
410 420
....*....|....*....|.
gi 358439528 535 ---AVQSHAVAEEEARKAHQL 552
Cdd:PTZ00121 1660 kikAAEEAKKAEEDKKKAEEA 1680
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
260-483 |
5.37e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 5.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 260 AQWRTVEGALKERRKAVDEAADALLKAKEELEKMKTIIEDAKKR----EIAGATPHITAAEGRLHNmiVDLDNVVKKVQA 335
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRleaaEDLARLELRALLEERFAA--ALGDAVERELRE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 336 ------AQSEAKVVSQYHELV--------------------VQARDDFRKELDSITPDITPG----WKGMTGKLSTDDLN 385
Cdd:COG4913 770 nleeriDALRARLNRAEEELEramrafnrewpaetadldadLESLPEYLALLDRLEEDGLPEyeerFKELLNENSIEFVA 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 386 SL-------IAHAHRRIDQLNRELAQQKATEKQHIELALEKHKLEEKRTFDSAVAKALEHHRSEIQAEQDRKVEEVRDAM 458
Cdd:COG4913 850 DLlsklrraIREIKERIDPLNDSLKRIPFGPGRYLRLEARPRPDPEVREFRQELRAVTSGASLFDEELSEARFAALKRLI 929
|
250 260
....*....|....*....|....*.
gi 358439528 459 EnemrtQLRRQAAAHTDH-LRDVLKV 483
Cdd:COG4913 930 E-----RLRSEEEESDRRwRARVLDV 950
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
188-552 |
1.18e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 188 EEVAARLAQQEKQEQVEMESLAKSLEDALNRTSSVTLQTITAQNAAVQAVKAHsNILKTAMDNSEIAGEKKSAQWRTVEG 267
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE-EAKKKAEEAKKADEAKKKAEEAKKAD 1486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 268 ALKERRKAVDEAADALLKAKEELEK---MKTIIEDAKKREIAGATPHITAAEGRLHNMIVDLDNV-----------VKKV 333
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKadeAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELkkaeelkkaeeKKKA 1566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 334 QAAQSEAKVVSQYHELVVQARDDFRKELDSITPDITPGWKGMTGKLSTDDLNSLIAHAHRRIDQLNRELAQQKATEKQHI 413
Cdd:PTZ00121 1567 EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 414 ELALEKHKLEEkrtfDSAVAKALEHHRSEiqaEQDRKVEEVRDAMENEMrtqlrrqaaahtdhlrdvlKVQEQELKYEFE 493
Cdd:PTZ00121 1647 KKAEELKKAEE----ENKIKAAEEAKKAE---EDKKKAEEAKKAEEDEK-------------------KAAEALKKEAEE 1700
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 358439528 494 QGLSEKLSEQELEFRRRSQEQMDSftldintAYARLRGIEQAVQShavAEEEARKAHQL 552
Cdd:PTZ00121 1701 AKKAEELKKKEAEEKKKAEELKKA-------EEENKIKAEEAKKE---AEEDKKKAEEA 1749
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
209-538 |
2.33e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 209 AKSLEDALN-------RTSSVTLQ--TITAQNAAVQA-VKAHSNILKTamdNSEIagEKKSAQWRTVEGALKERRKAVDE 278
Cdd:TIGR02168 628 VDDLDNALElakklrpGYRIVTLDgdLVRPGGVITGGsAKTNSSILER---RREI--EELEEKIEELEEKIAELEKALAE 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 279 AADALLKAKEELEKMKTIIEDaKKREIAGATPHITAAEGRLHNMIVDLDNVVKKVQAAQSEAKVVSQYHELVVQARDDFR 358
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEE-LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 359 KELDSITPDITpgwkgmTGKLSTDDLNSLIAHAHRRIDQLNRELAQQK-----------ATEKQHIELALEK-------- 419
Cdd:TIGR02168 782 AEIEELEAQIE------QLKEELKALREALDELRAELTLLNEEAANLRerleslerriaATERRLEDLEEQIeelsedie 855
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 420 ---HKLEEKRTFDSAVAKALEHHrSEIQAEQDRKVEEVRDAMENEM---------RTQLRRQAAAHTDHLRDvLKVQEQE 487
Cdd:TIGR02168 856 slaAEIEELEELIEELESELEAL-LNERASLEEALALLRSELEELSeelreleskRSELRRELEELREKLAQ-LELRLEG 933
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 358439528 488 LKYEFEQgLSEKLSEQ---ELEFrrrSQEQMDSFTLDINTAYARLRGIEQAVQS 538
Cdd:TIGR02168 934 LEVRIDN-LQERLSEEyslTLEE---AEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
268-528 |
3.24e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 268 ALKERRKAVDEAADALLKAKEELEKMKTIIEDAKKREIAgatpHITAAE--------GRLHNMIVDLDNVVKKVQAAQSE 339
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREA----LQRLAEyswdeidvASAEREIAELEAELERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 340 AKVVSQYHELVVQARDDFRKELDSITPDITpgwkgmtgklstdDLNSLIAHAHRRIDQLNRELAQQKATEKQHIELALEK 419
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIG-------------RLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 420 HKLEE-KRTFDSAVAKALEHHRSEIQAEQDRKveevRDAMENEMRTQLRRQAAAHTDHLRDVLKVQEQELKYEFEQglSE 498
Cdd:COG4913 754 RFAAAlGDAVERELRENLEERIDALRARLNRA----EEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLE--ED 827
|
250 260 270
....*....|....*....|....*....|
gi 358439528 499 KLSEQELEFRRRSQEQMDSFTLDINTAYAR 528
Cdd:COG4913 828 GLPEYEERFKELLNENSIEFVADLLSKLRR 857
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
175-518 |
4.35e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 4.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 175 EEAFSSSVRERPPEEVAARLAQQEKQEQVEMESLAKSLEDALNRTSSVTLQTITAQNAAVQAVKAHSNILKTAMDNSEIA 254
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 255 GEKKSAQWRTVEGALK-ERRKAVDEAADALLKAK-EELEKMktiiEDAKKREIAGATPHITAAEGRlHNMIVDLDNVVKK 332
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKaEEAKKADEAKKAEEKKKaDELKKA----EELKKAEEKKKAEEAKKAEED-KNMALRKAEEAKK 1588
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 333 VQAAQSEAKVVSQYHELVVQARDDFRKELDSITPDITPgwKGMTGKLSTDDLNSLIAHAHRRIDQLNRELAQQKATEKQH 412
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK--KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 413 IELALE-KHKLEEKRTFDSAVAKALEHHRSEiqAEQDRKVEEVRDAMENEMRT----------------QLRRQAAAH-- 473
Cdd:PTZ00121 1667 AKKAEEdKKKAEEAKKAEEDEKKAAEALKKE--AEEAKKAEELKKKEAEEKKKaeelkkaeeenkikaeEAKKEAEEDkk 1744
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 358439528 474 --------------TDHLRDVLKVQEQELKYE----FEQGLSEKLSEQELEFRRRSQEQMDSF 518
Cdd:PTZ00121 1745 kaeeakkdeeekkkIAHLKKEEEKKAEEIRKEkeavIEEELDEEDEKRRMEVDKKIKDIFDNF 1807
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
188-503 |
1.36e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 188 EEVAARLAQQEKQEQ----VEMESLAKSLEDALN---RTSSVTLQTITAQnaAVQAVKAHSNILKTAMDNSEIAGEKKSA 260
Cdd:pfam12128 641 ETFARTALKNARLDLrrlfDEKQSEKDKKNKALAerkDSANERLNSLEAQ--LKQLDKKHQAWLEEQKEQKREARTEKQA 718
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 261 QWRTVEGALKERRKAVDEAADAL-LKAKEELEKMKTiiedAKKREIAGATPHitaaEGRLHNMIVDLDNVVKKV-QAAQS 338
Cdd:pfam12128 719 YWQVVEGALDAQLALLKAAIAARrSGAKAELKALET----WYKRDLASLGVD----PDVIAKLKREIRTLERKIeRIAVR 790
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 339 EAKVVSQ---YHELVVQARDDFRKELDSITPDITPgwkgmtgklSTDDLNSLIAHAHRRIDQLNRELaqqKATEKQHIEL 415
Cdd:pfam12128 791 RQEVLRYfdwYQETWLQRRPRLATQLSNIERAISE---------LQQQLARLIADTKLRRAKLEMER---KASEKQQVRL 858
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 416 ALEKHKLeekRTFDSAVAKALEHHRSE----IQAEQDRKVEEVRDAMENEMrtqlrRQAAAHTDHLRDVLKVQEQELKYE 491
Cdd:pfam12128 859 SENLRGL---RCEMSKLATLKEDANSEqaqgSIGERLAQLEDLKLKRDYLS-----ESVKKYVEHFKNVIADHSGSGLAE 930
|
330
....*....|..
gi 358439528 492 FEQGLSEKLSEQ 503
Cdd:pfam12128 931 TWESLREEDHYQ 942
|
|
| ARGLU |
pfam15346 |
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is ... |
432-551 |
1.52e-04 |
|
Arginine and glutamate-rich 1; ARGLU, arginine and glutamate-rich 1 protein family, is required for the oestrogen-dependent expression of ESR1 target genes. It functions in cooperation with MED1. The family of proteins is found in eukaryotes.
Pssm-ID: 405931 [Multi-domain] Cd Length: 151 Bit Score: 42.73 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 432 VAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAhtdhlrdvlKVQEQELKYEFEQGLSEKLSEQELEFRRRS 511
Cdd:pfam15346 24 VEEELEKRKDEIEAEVERRVEEARKIMEKQVLEELEREREA---------ELEEERRKEEEERKKREELERILEENNRKI 94
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 358439528 512 QEQMDSFTLDINTAYARLRGIEQAVQSHAVAEEEARKAHQ 551
Cdd:pfam15346 95 EEAQRKEAEERLAMLEEQRRMKEERQRREKEEEEREKREQ 134
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
188-506 |
4.73e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 188 EEVAARLAQQEKQEQVEMESLAKSLEDALNRTSSVTLQTITAQNAAVQAVKAHsNILKTAMDNSEIAGE-----KKSAQW 262
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL-LLLLEAEADYEGFLEgvkaaLLLAGL 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 263 RTVEGAL-------KERRKAVDEAADALLKAK--EELEKMKTIIEDAKKREIAGAT--PHITAAEGRLHNMIVDLDNVVK 331
Cdd:COG1196 520 RGLAGAVavligveAAYEAALEAALAAALQNIvvEDDEVAAAAIEYLKAAKAGRATflPLDKIRARAALAAALARGAIGA 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 332 KVQAAQSEAkvvsQYHELVVQARDDFRKELDSITPDITPGWKGMTGKLSTDDLNSLIAHAHRRIDQLNRELAQQKATEKQ 411
Cdd:COG1196 600 AVDLVASDL----READARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 412 HIELALEKHKLEEKRTFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHTDHLRDVLKVQEQELKYE 491
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
330
....*....|....*
gi 358439528 492 FEQGLSEKLSEQELE 506
Cdd:COG1196 756 LPEPPDLEELERELE 770
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
382-550 |
5.28e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 5.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 382 DDLNSLIAHAHRRIDQLNREL--AQQKATEKQ-HIELALEKH-----KLEEKRTFDSAVAKALEHHRSEIQ------AEQ 447
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELsdASRKIGEIEkEIEQLEQEEeklkeRLEELEEDLSSLEQEIENVKSELKeleariEEL 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 448 DRKVEEVRDAMEN-----------EMRTQLRRQAAAHTDhLRDVLKVQEQEL-KYEFEQGLSEKLSEQELEFRRRSQEQM 515
Cdd:TIGR02169 771 EEDLHKLEEALNDlearlshsripEIQAELSKLEEEVSR-IEARLREIEQKLnRLTLEKEYLEKEIQELQEQRIDLKEQI 849
|
170 180 190
....*....|....*....|....*....|....*
gi 358439528 516 DSFTLDINTAYARLRGIEQAVQSHAVAEEEARKAH 550
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884
|
|
| COG4223 |
COG4223 |
Uncharacterized conserved protein [Function unknown]; |
496-730 |
1.23e-03 |
|
Uncharacterized conserved protein [Function unknown];
Pssm-ID: 443367 [Multi-domain] Cd Length: 259 Bit Score: 41.19 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 496 LSEKLSEQELEFRRRSQEQMDsftLDINTAYARLRGIEQAVQSHAVAEEEARKAHQLWLSVEALKYSMKTSSaemptiPL 575
Cdd:COG4223 39 LEARLAALRAALAAAREAVAA---AAAAALEARLAALEAKAAAPEAEAAAAARAAALALAAAALRAAVERGQ------PF 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 576 GSAVEAIRVNCSDNEFTQALTAAippesLTRGVYSEETLRARFYAVQKLARRVAMIDETRNSLYQYFLSYLQSLLlfppk 655
Cdd:COG4223 110 AAELAALEALAPDAPALAALAAF-----AATGVPTLAALRAEFPAAARAALAAARAPEADASWLDRLLAFARSLV----- 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 358439528 656 QLKPPAElyPEDINTFKLLSYASYCIEHGDLELAAKFVNQLKGESRRVAQDWLKEARMTLETKQIVEILTAYASA 730
Cdd:COG4223 180 TVRRVGP--VEGDDPDAILARAEAALAAGDLAGALAELEALPEAAQAAAAPWIAKAEARLAADAALQALAAQALA 252
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
389-532 |
1.37e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 389 AHAHRRIDQLNRELAQQKATEKQHIELALEKHKLEEkrtfDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMR----- 463
Cdd:COG4913 647 REALQRLAEYSWDEIDVASAEREIAELEAELERLDA----SSDDLAALEEQLEELEAELEELEEELDELKGEIGRlekel 722
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 464 TQLRRQAAAHTDHLRDVLKVQEQELKYEFEQGLSE-KLSEQELEFRRRSQEQMDSFTLDINTAYARLRGI 532
Cdd:COG4913 723 EQAEEELDELQDRLEAAEDLARLELRALLEERFAAaLGDAVERELRENLEERIDALRARLNRAEEELERA 792
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
393-569 |
1.64e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 393 RRIDQLNR-ELAQQKATEKQHIElalEKHKLEEKRTFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQaa 471
Cdd:PTZ00121 1224 KKAEAVKKaEEAKKDAEEAKKAE---EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKA-- 1298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 472 ahtdhlRDVLKVQEQELKYEfEQGLSEKLSEQELEFRRRSQEQMDSFTLDINTAYARlRGIEQAVQSHAVAEEEARKAHQ 551
Cdd:PTZ00121 1299 ------EEKKKADEAKKKAE-EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA-KAEAEAAADEAEAAEEKAEAAE 1370
|
170
....*....|....*...
gi 358439528 552 LWLSVEALKYSMKTSSAE 569
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAE 1388
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
188-552 |
1.80e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 188 EEVAARLAQQEKQEQVEMESLAKSLEDALnrtssvtlQTITAQNAAVQAVKAHSNILKtamdnSEIAGEKKSAQwrtveg 267
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELR--------LELEELELELEEAQAEEYELL-----AELARLEQDIA------ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 268 ALKERRKAVDEAADALLKAKEELEKmktiiedakkreiagatpHITAAEGRLHNMIVDLDNVVKKVQAAQSEAKVVSQYH 347
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEE------------------ELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 348 ELVVQARDDFRKELDsitpditpgwkgmtgklstDDLNSLIAHAHRRIDQLNRELAQQKATEKQHIELALEKHKLEEKRT 427
Cdd:COG1196 368 LEAEAELAEAEEELE-------------------ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 428 FDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHTDHLRDVLKVQEQELKYEFEQGLSEKLSEQELEF 507
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 358439528 508 RRRSQEQMDSFTLdINTAYARLRGIEQAVQSHAVAEEEARKAHQL 552
Cdd:COG1196 509 GVKAALLLAGLRG-LAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
401-573 |
4.51e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 401 ELAQQKATEKQHIELALEKHKLEEKRtfdsavaKALEHHRSeiQAEQDRKVEEVRDAMENEMRTqlRRQAAAHTDHLRDV 480
Cdd:pfam17380 449 ERVRLEEQERQQQVERLRQQEEERKR-------KKLELEKE--KRDRKRAEEQRRKILEKELEE--RKQAMIEEERKRKL 517
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 481 LKVQEQELK---YEFEQ---GLSEKLSEQELEFRRRSQEQMDSFTLDINTAYARLRgiEQAVQSHAVAEEEARKAHQLWL 554
Cdd:pfam17380 518 LEKEMEERQkaiYEEERrreAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMER--EREMMRQIVESEKARAEYEATT 595
|
170 180
....*....|....*....|.
gi 358439528 555 SVEALK--YSMKTSSAEMPTI 573
Cdd:pfam17380 596 PITTIKpiYRPRISEYQPPDV 616
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
396-514 |
5.89e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 396 DQLNRELAQQKATEKQHIELALEKHKLEEKRTFDSAVAKALEHHRSEIQAEQDRKVEEVRDAMENEMRTQLRRQAAAHtd 475
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAH-- 333
|
90 100 110
....*....|....*....|....*....|....*....
gi 358439528 476 hlrdvlkvQEQELKYEFEQGLSEKLSEQELEFRRRSQEQ 514
Cdd:TIGR00618 334 --------VKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA 364
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
358-513 |
7.13e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 39.41 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358439528 358 RKELDSITPDITPGWKGMTGKLSTDDLNslIAHAHRRIDQLNRELaqqKATEKQHIELALEKHKLEEKRTFDSAVAKALE 437
Cdd:pfam15905 165 RNKLEAKMKEVMAKQEGMEGKLQVTQKN--LEHSKGKVAQLEEKL---VSTEKEKIEEKSETEKLLEYITELSCVSEQVE 239
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 358439528 438 HHRSEIQaeqdrKVEEVRDAMENEMRTqLRRQAAAHTDHLRDVLKVQEQELKyEFEQGLSEKLSEQELEFRRRSQE 513
Cdd:pfam15905 240 KYKLDIA-----QLEELLKEKNDEIES-LKQSLEEKEQELSKQIKDLNEKCK-LLESEKEELLREYEEKEQTLNAE 308
|
|
| |
