|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
286-992 |
1.77e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.82 E-value: 1.77e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 286 AVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAAseskLKEQLVTREREITAVQARmqasYQDHVNETQQ 365
Cdd:TIGR02168 228 ALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE----LRLEVSELEEEIEELQKE----LYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 366 LQGKIRALQEQLEN------GPNTQLARLQQENSILRDALNQATSQTESKQN--AELAKLRQECNKLMKELSEKSEVLQQ 437
Cdd:TIGR02168 300 LEQQKQILRERLANlerqleELEAQLEELESKLDELAEELAELEEKLEELKEelESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 438 EEQQKKSweiKAAASEKQIEQLQTSQREMEATLQkRLDEVSDELRKTQTSYRSLVADAEKAKGQQQS------IAELQAK 511
Cdd:TIGR02168 380 QLETLRS---KVAQLELQIASLNNEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELKELQAELeeleeeLEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 512 LLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEagRMREAEEDRDLQAANEAEMKQLQLRLQE--KTDQ 589
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE--NLEGFSEGVKALLKNQSGLSGILGVLSEliSVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 590 LLSLEREAAeLREAMEQQKTKNNdlrEKNWKAVEALTTVEKA----CEEKLLAATKAKEELAHQLdvlqtRTKETLLSAL 665
Cdd:TIGR02168 534 GYEAAIEAA-LGGRLQAVVVENL---NAAKKAIAFLKQNELGrvtfLPLDSIKGTEIQGNDREIL-----KNIEGFLGVA 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 666 PEVTVSQQDYeawlqefkEKAVNVLKQHTVMTEPVDSAL----------------------------------------- 704
Cdd:TIGR02168 605 KDLVKFDPKL--------RKALSYLLGGVLVVDDLDNALelakklrpgyrivtldgdlvrpggvitggsaktnssilerr 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 705 -KLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVW---KAKLTVSEEELQKSQLQLKSLEDMIEKLKAEL 780
Cdd:TIGR02168 677 rEIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELeelSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 781 QSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELAlvrQQLSEMKSHVQDG 860
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA---NLRERLESLERRI 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 861 EVAGSQADLGDPTPFELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERL 940
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 2099354985 941 EKEKKLTRD-LGQAATKLQEL---LKVTQDQLAKERETVKKLKEQLHEKGEEDSSK 992
Cdd:TIGR02168 914 RRELEELREkLAQLELRLEGLevrIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
288-890 |
3.68e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.46 E-value: 3.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 288 LKRQLEEKEKQ---------LTAEQE--DAAAARNKLRELSKELaaekAKAAASESKLKEQLVTREREITAVQARMQASY 356
Cdd:COG1196 198 LERQLEPLERQaekaeryreLKEELKelEAELLLLKLRELEAEL----EELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 357 QDHVNETQQLQGKIRALQEQLEngpntQLARLQQENSILRDALNQATsqteskqnAELAKLRQECNKLMKELSEKSEVLQ 436
Cdd:COG1196 274 LELEELELELEEAQAEEYELLA-----ELARLEQDIARLEERRRELE--------ERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 437 QEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSE 516
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 517 TEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLERE 596
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 597 AAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAAtkakeeLAHQLDVLQTRTKETLLSALpevtvsqqdye 676
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA------LAAALQNIVVEDDEVAAAAI----------- 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 677 AWLQEFKEKAV-----NVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGmlRDLQKSVEEEEQVWKAK 751
Cdd:COG1196 564 EYLKAAKAGRAtflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLG--RTLVAARLEAALRRAVT 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 752 LTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQnyTKEVEGLRQLLSESQEQLEA 831
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL--LAEEEEERELAEAEEERLEE 719
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 2099354985 832 AKTETQKQSKELALVRQQLSEMKSHVQDGEVAGSQADLGDPTPFELKMQLEQNEALMEK 890
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
384-981 |
2.42e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.22 E-value: 2.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 384 QLARLQQENSILRDALNQATSQTESKQNAELAKLRQecnkLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQ 463
Cdd:COG1196 201 QLEPLERQAEKAERYRELKEELKELEAELLLLKLRE----LEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 464 REMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRL 543
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 544 LERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQlRLQEKTDQLLSLEREAAELREAMEQQKtknndlreknwKAVE 623
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALR-AAAELAAQLEELEEAEEALLERLERLE-----------EELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 624 ALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHtvmtepVDSA 703
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL------LLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 704 LKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLtvseeELQKSQLQLKSLEDMIEKLKAELQSt 783
Cdd:COG1196 499 AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA-----LQNIVVEDDEVAAAAIEYLKAAKAG- 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 784 dqlKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQDGEVA 863
Cdd:COG1196 573 ---RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 864 GSQADLGDPTPFELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKE 943
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
570 580 590
....*....|....*....|....*....|....*...
gi 2099354985 944 KKLTRDlgQAATKLQELLKVTQDQLAKERETVKKLKEQ 981
Cdd:COG1196 730 LEAERE--ELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
286-853 |
8.83e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 8.83e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 286 AVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKElaaekakaaasesklkeqlvtrEREITAVQARMQASYQDHVNETQQ 365
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAE----------------------EYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 366 LQGKIRALQEQLENgpntQLARLQQENSILRDALNQATSQTESKQNAELAKLRQEcnklmKELSEKSEVLQQEEQQKKSW 445
Cdd:COG1196 314 LEERLEELEEELAE----LEEELEELEEELEELEEELEEAEEELEEAEAELAEAE-----EALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 446 EIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLE 525
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 526 LDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAME 605
Cdd:COG1196 465 LAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 606 QQKTKNNDLREknwkAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAwlqEFKEK 685
Cdd:COG1196 545 AAALQNIVVED----DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREAD---ARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 686 AVNVLKQHTVMTEPVDSALKLKEAEEAQstlQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLtvsEEELQKSQLQ 765
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGR---LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL---EELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 766 LKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELAL 845
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
....*...
gi 2099354985 846 VRQQLSEM 853
Cdd:COG1196 772 LEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
256-959 |
8.31e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 8.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 256 EAQQLIEILTERAGIVQDTWHTATQKgdpVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLK 335
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQ---LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 336 EqLVTREREITAVQARMQASYQDHVNETQQLQGKIRALQEQLEnGPNTQLARLQQENSILRDALNQATSQTESKQNAELA 415
Cdd:TIGR02168 369 E-LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 416 KLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDEL--RKTQTSYRSLVA 493
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknQSGLSGILGVLS 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 494 DA-EKAKGQQQSIAE-----LQAKLLSSETEV-------------KSKLLELDSLKGKLQEASSENTR------------ 542
Cdd:TIGR02168 527 ELiSVDEGYEAAIEAalggrLQAVVVENLNAAkkaiaflkqnelgRVTFLPLDSIKGTEIQGNDREILkniegflgvakd 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 543 --------------LLERIKSIEALLEAGRMR-------------------------EAEEDRDLQAANEAEMKQLQLRL 583
Cdd:TIGR02168 607 lvkfdpklrkalsyLLGGVLVVDDLDNALELAkklrpgyrivtldgdlvrpggvitgGSAKTNSSILERRREIEELEEKI 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 584 QEKTDQLLSLEREAAELREAMEQQKTKNNDLReknwKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKE---- 659
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleae 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 660 --TLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALK-LKEAEEAQSTLQAECEQYRAILAETEGMLRD 736
Cdd:TIGR02168 763 ieELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAeLTLLNEEAANLRERLESLERRIAATERRLED 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 737 LQKSVEEEEqvwkakltvseEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVE 816
Cdd:TIGR02168 843 LEEQIEELS-----------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 817 GLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEmkshvqdgevagsqadlgdptpfELKMQLEQNEALMEKEQELRQ 896
Cdd:TIGR02168 912 ELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE-----------------------EYSLTLEEAEALENKIEDDEE 968
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2099354985 897 KLTRELEEaqssacsLQAELEKLRlAENAAAsdMEEAQHLKERLEKEKKLTRDLGQAATKLQE 959
Cdd:TIGR02168 969 EARRRLKR-------LENKIKELG-PVNLAA--IEEYEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
389-993 |
2.61e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.79 E-value: 2.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 389 QQENSILRDALNQATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQK----KSWEIKAAASE-KQIEQLQTSQ 463
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKaedaKRVEIARKAEDaRKAEEARKAE 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 464 REMEATLQKRLDEV--SDELRKTQTSYRSLVA----DAEKAKGQQQSIAELQAKLLSSETEVKSKLLE--------LDSL 529
Cdd:PTZ00121 1174 DAKKAEAARKAEEVrkAEELRKAEDARKAEAArkaeEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEakkaeeerNNEE 1253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 530 KGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQllslEREAAELREAMEQQKT 609
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKK 1329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 610 KNNDLR---EKNWKAVEALTTVEKACEEKLLAATKAKEelAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEKA 686
Cdd:PTZ00121 1330 KADAAKkkaEEAKKAAEAAKAEAEAAADEAEAAEEKAE--AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 687 VNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRA----ILAETEGMLRDLQKSVEEEEQVWKAKLTVSE----EE 758
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAdeakKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakkaDE 1487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 759 LQKSQLQLKSLEDMIEKLKAELQSTDQLKEyisLLEAQLENHLQTASSERQnytkeVEGLRQLlSESQEQLEAAKTETQK 838
Cdd:PTZ00121 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKK---AEEAKKADEAKKAEEAKK-----ADEAKKA-EEKKKADELKKAEELK 1558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 839 QSKElalvRQQLSEMKSHVQDGEVAGSQADLGDPTPfelKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEK 918
Cdd:PTZ00121 1559 KAEE----KKKAEEAKKAEEDKNMALRKAEEAKKAE---EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE 1631
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2099354985 919 LRLAENAAASDMEEAQHlKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEEDSSKE 993
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKK-AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
33-168 |
2.32e-12 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 65.14 E-value: 2.32e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 33 MKETSYEEALAKQRKELEKTnQHKIEKKKKEKPVEKKGKAKKKEEKPNGKIPEQQVTQEVTDSSKDVVVEPAVVPEPIAV 112
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKT-PTEKEKKKKEKKKEKKKKSKKKEEKPNGKLPESEQADESEEEPREFKTPDEAPSAALEP 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2099354985 113 E-----SPIAAVSVPPQEKEKPALSPKEKRKKEKKVAKVEPAPSPALASPPASVPKGSPVL 168
Cdd:pfam05104 80 EpvptpVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
356-976 |
3.56e-12 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 70.71 E-value: 3.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 356 YQDHVNETQQLQGKIRALQEQLENgpntqLARLQQEnsiLRDALNQATSqteskqnaeLAKLRQECNKLmKELSEKSEVL 435
Cdd:COG4913 213 VREYMLEEPDTFEAADALVEHFDD-----LERAHEA---LEDAREQIEL---------LEPIRELAERY-AAARERLAEL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 436 QQEEQQKKSW--EIKAAASEKQIEQLQTSQREmeatLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQ-QSIAELQAKL 512
Cdd:COG4913 275 EYLRAALRLWfaQRRLELLEAELEELRAELAR----LEAELERLEARLDALREELDELEAQIRGNGGDRlEQLEREIERL 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 513 LSSETEVKSKLLELDSLKGKLQEASSENTR-LLERIKSIEALLEAGRmREAEEDRDLQAANEAEMKQLQLRLQEKTDQLL 591
Cdd:COG4913 351 ERELEERERRRARLEALLAALGLPLPASAEeFAALRAEAAALLEALE-EELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 592 SLER-------EAAELREAMEQQ-KTKNNDLR-----------EKNWK-AVEAL-----TT--VEKACEEKLLAA---TK 641
Cdd:COG4913 430 SLERrksnipaRLLALRDALAEAlGLDEAELPfvgelievrpeEERWRgAIERVlggfaLTllVPPEHYAAALRWvnrLH 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 642 AKEELahQLDVLQTRTKETLLSALPE------VTVSQQDYEAWLQEFKEKAVNVLKqhtvmtepVDSALKLKEAEeaqst 715
Cdd:COG4913 510 LRGRL--VYERVRTGLPDPERPRLDPdslagkLDFKPHPFRAWLEAELGRRFDYVC--------VDSPEELRRHP----- 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 716 lqaeceqyRAILAEteGMLRDLQKSVE-----EEEQVW------KAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTD 784
Cdd:COG4913 575 --------RAITRA--GQVKGNGTRHEkddrrRIRSRYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQ 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 785 QLKEYISLLE---------AQLENHLQTASSERQNYTK---EVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSE 852
Cdd:COG4913 645 ERREALQRLAeyswdeidvASAEREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 853 MKSHVQdgEVAGSQADLGDPTPFELKMQLE---QNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLR--------L 921
Cdd:COG4913 725 AEEELD--ELQDRLEAAEDLARLELRALLEerfAAALGDAVERELRENLEERIDALRARLNRAEEELERAMrafnrewpA 802
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2099354985 922 AENAAASDMEEAQHLKERLEKEKklTRDLGQAATKLQELLKVTQDQ--------LAKERETVK 976
Cdd:COG4913 803 ETADLDADLESLPEYLALLDRLE--EDGLPEYEERFKELLNENSIEfvadllskLRRAIREIK 863
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
278-645 |
1.63e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.01 E-value: 1.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 278 ATQKGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSK--ELAAEKAKAAASESKLKEQLVTREREITAVQARMQAS 355
Cdd:PTZ00121 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKadEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 356 YQDHVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDALN----QATSQTESKQNAELAKLRQECNKLMKELSEK 431
Cdd:PTZ00121 1432 KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkaeEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 432 SEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEV--SDELRKTQTSYRS------LVADAEKAKGQQQ 503
Cdd:PTZ00121 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkAEEKKKAEEAKKAeedknmALRKAEEAKKAEE 1591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 504 SIAELQAKLLSSETEVKSKLL---ELDSLKGKLQEASSENTRLLERIKSIEA--LLEAGRMREAEEDRDLQAANEAEMKQ 578
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAkkaEEAKIKAEELKKAEEEKKKVEQLKKKEAeeKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2099354985 579 LQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEE 645
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
288-988 |
2.15e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 2.15e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 288 LKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASE--SKLKEQLVTREREITAVQarmqasYQDHVNETQQ 365
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAEryKELKAELRELELALLVLR------LEELREELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 366 LQGKIRALQEQLENGpNTQLARLQQENSILRDALNQAtsqteskqNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSW 445
Cdd:TIGR02168 244 LQEELKEAEEELEEL-TAELQELEEKLEELRLEVSEL--------EEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 446 EIKAAASEKQIEQLQTSQREmeatLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQ----SIAELQAKLLSSETEVKS 521
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDE----LAEELAELEEKLEELKEELESLEAELEELEAELEelesRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 522 KLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLS-LEREAAEL 600
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEaLEELREEL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 601 REAMEQQKTKNNDLREKNWK--AVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTK---------ETLLSALPEVT 669
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARldSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdegyeaaiEAALGGRLQAV 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 670 VSQQDYEAWlqefkeKAVNVLKQHTV--MTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVeeeeQV 747
Cdd:TIGR02168 551 VVENLNAAK------KAIAFLKQNELgrVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL----SY 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 748 WKAKLTVSEEeLQKSQLQLKSL--EDMIEKLKAELQSTDQLkeyISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSES 825
Cdd:TIGR02168 621 LLGGVLVVDD-LDNALELAKKLrpGYRIVTLDGDLVRPGGV---ITGGSAKTNSSILERRREIEELEEKIEELEEKIAEL 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 826 QEQLEAAKTETQKQSKELALVRQQLSEMKSHVQdgevagsqadlgdptpfELKMQLEQNEALMEKEQELRQKLTRELEEA 905
Cdd:TIGR02168 697 EKALAELRKELEELEEELEQLRKELEELSRQIS-----------------ALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 906 QSSACSLQAELEKLRLAENAAASDMEEaqhlkerlekekkltrdlgqaatkLQELLKVTQDQLAKERETVKKLKEQLHEK 985
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEE------------------------LEAQIEQLKEELKALREALDELRAELTLL 815
|
...
gi 2099354985 986 GEE 988
Cdd:TIGR02168 816 NEE 818
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
335-985 |
2.92e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.84 E-value: 2.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 335 KEQLVTREREITA-VQARMQASYQDHVNETQQLQGKIRA---LQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQ 410
Cdd:pfam15921 118 KLQEMQMERDAMAdIRRRESQSQEDLRNQLQNTVHELEAakcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFE 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 411 NAELAKLRQECNKLMKEL----SEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQT-SQREMEATLQKRLDEVSDELRKTQ 485
Cdd:pfam15921 198 EASGKKIYEHDSMSTMHFrslgSAISKILRELDTEISYLKGRIFPVEDQLEALKSeSQNKIELLLQQHQDRIEQLISEHE 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 486 TSYRSLVADAEKAKGQQQSIAE----LQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLE-RIKSIEA--LLEAGR 558
Cdd:pfam15921 278 VEITGLTEKASSARSQANSIQSqleiIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEdKIEELEKqlVLANSE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 559 MREAEEDRDLQAANEAEMK-QLQLRLQE--KTDQLLSLEREAAE--LREAMEQQKTKNNDLREKNWKAVEA------LTT 627
Cdd:pfam15921 358 LTEARTERDQFSQESGNLDdQLQKLLADlhKREKELSLEKEQNKrlWDRDTGNSITIDHLRRELDDRNMEVqrlealLKA 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 628 VEKACE---EKLLAATKAKEELAHQLDVLQTR---TKETLLSALPEVTVSQ----------QDYEAWLQEfKEKAVNVLK 691
Cdd:pfam15921 438 MKSECQgqmERQMAAIQGKNESLEKVSSLTAQlesTKEMLRKVVEELTAKKmtlessertvSDLTASLQE-KERAIEATN 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 692 QH-TVMTEPVDSALK----LKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQ-VWKAKLTVSEEELQKSQLq 765
Cdd:pfam15921 517 AEiTKLRSRVDLKLQelqhLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlVGQHGRTAGAMQVEKAQL- 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 766 lkslEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQnytkeveglrQLLSESQEQLEAAKTETQKQSKELAL 845
Cdd:pfam15921 596 ----EKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKV----------KLVNAGSERLRAVKDIKQERDQLLNE 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 846 VRQQLSEMKSHVQDGEVAG----SQADLGDPTPFELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRL 921
Cdd:pfam15921 662 VKTSRNELNSLSEDYEVLKrnfrNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRG 741
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2099354985 922 AENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEK 985
Cdd:pfam15921 742 QIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEK 805
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
288-827 |
4.87e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.01 E-value: 4.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 288 LKRQLEEKEKQLTAEQEDAAAARNKLRELSKELaAEKAKAAASESKLKEQLVTREREITAVQARMQAsyqdhvnetqqLQ 367
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREEL-EKLEKEVKELEELKEEIEELEKELESLEGSKRK-----------LE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 368 GKIRALQEQLEngpntqlaRLQQENSILRDalnqatsqtESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEI 447
Cdd:PRK03918 259 EKIRELEERIE--------ELKKEIEELEE---------KVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 448 KAAASEKQIEQLQTSQREMEaTLQKRLDEVSDELRKTQTSYRSLvadaEKAKGQQQSIAELQAKLLSSETE-VKSKLLEL 526
Cdd:PRK03918 322 EINGIEERIKELEEKEERLE-ELKKKLKELEKRLEELEERHELY----EEAKAKKEELERLKKRLTGLTPEkLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 527 DSLKGKLQEASSE--------NTRLLERIKSIEALLEA-------GRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLL 591
Cdd:PRK03918 397 EKAKEEIEEEISKitarigelKKEIKELKKAIEELKKAkgkcpvcGRELTEEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 592 SLEREAAE-------------LREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQ--TR 656
Cdd:PRK03918 477 KLRKELRElekvlkkeselikLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEelKK 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 657 TKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEP--------VDSALKLKEAEEAQSTLQAECEQYRAILA 728
Cdd:PRK03918 557 KLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPfyneylelKDAEKELEREEKELKKLEEELDKAFEELA 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 729 ETEGMLRDLQKSVEEEEQVWkakltvSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQtassER 808
Cdd:PRK03918 637 ETEKRLEELRKELEELEKKY------SEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE----ER 706
|
570
....*....|....*....
gi 2099354985 809 QNYTKEVEGLRQLLSESQE 827
Cdd:PRK03918 707 EKAKKELEKLEKALERVEE 725
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
287-988 |
6.85e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 6.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 287 VLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHVNETQQL 366
Cdd:TIGR02169 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 367 QGKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTEskQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWE 446
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE--ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 447 IKAAASEKQIEQLqtsQREMEaTLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQqqsIAELQAKLLSSETEVKSKLLEL 526
Cdd:TIGR02169 385 DELKDYREKLEKL---KREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAK---INELEEEKEDKALEIKKQEWKL 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 527 DSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTD---------QLLSLEREA 597
Cdd:TIGR02169 458 EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASiqgvhgtvaQLGSVGERY 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 598 AELREAMEQQKTKNndlreknwkAVEALTTVEKACEEkLLAATKAKEelAHQLDVLQTRTKETLLSALPEVTVSqqDYEA 677
Cdd:TIGR02169 538 ATAIEVAAGNRLNN---------VVVEDDAVAKEAIE-LLKRRKAGR--ATFLPLNKMRDERRDLSILSEDGVI--GFAV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 678 WLQEFKEKAVNVLK---QHTVMTEPVDSA---------------------------LKLKEAEEAQSTLQAECEQYRAIL 727
Cdd:TIGR02169 604 DLVEFDPKYEPAFKyvfGDTLVVEDIEAArrlmgkyrmvtlegelfeksgamtggsRAPRGGILFSRSEPAELQRLRERL 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 728 AETEGMLRDLQKSVEEEEQV---WKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQstdQLKEYISLLEAQLENhlqtA 804
Cdd:TIGR02169 684 EGLKRELSSLQSELRRIENRldeLSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE---ELEEDLSSLEQEIEN----V 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 805 SSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQskELALVRQQLSEMKSHVQDGEVAGSqadlgdptpfELKMQLEQN 884
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALNDLEARLSHS--RIPEIQAELSKLEEEVSRIEARLR----------EIEQKLNRL 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 885 EALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKE-KKLTRDLGQAATKLQElLKV 963
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRlGDLKKERDELEAQLRE-LER 903
|
730 740
....*....|....*....|....*
gi 2099354985 964 TQDQLAKERETVKKLKEQLHEKGEE 988
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEA 928
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
407-997 |
8.87e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 8.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 407 ESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQT 486
Cdd:PTZ00121 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 487 SYRslvADAEKAKGQQQSIAElQAKLLSSETEVKSkllelDSLKGKLQEASSEntrllERIKSIEALLEAGRMREAEEDR 566
Cdd:PTZ00121 1301 KKK---ADEAKKKAEEAKKAD-EAKKKAEEAKKKA-----DAAKKKAEEAKKA-----AEAAKAEAEAAADEAEAAEEKA 1366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 567 DLQAANEAEMKQLQLRLQEKTDQLlsleREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEEL 646
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEK----KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE 1442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 647 AHQLDVLQTRTKEtllSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSAlklKEAEEAQSTLQAECEQYRAI 726
Cdd:PTZ00121 1443 AKKADEAKKKAEE---AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK---KKADEAKKAAEAKKKADEAK 1516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 727 LAETEGMLRDLQKSVEEE--EQVWKAKLTVSEEELQKSQlQLKSLEdmiEKLKAELQSTDQLKEYISLLEAQLENHLQTA 804
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKkaDEAKKAEEKKKADELKKAE-ELKKAE---EKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 805 SSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSH-VQDGEVAGSQADLGDPTPFELKMQLEQ 883
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEeKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 884 N----EALMEKEQELRQK---LTRELEEAQSSACSLQAELEKLRLAENAAASDME---EAQHLKERLEKEKKLTRDLGQA 953
Cdd:PTZ00121 1673 DkkkaEEAKKAEEDEKKAaeaLKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEEnkiKAEEAKKEAEEDKKKAEEAKKD 1752
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2099354985 954 ATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEEDSSKEGTSV 997
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
292-988 |
3.48e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.22 E-value: 3.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 292 LEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASY---QDHVNETQQLQG 368
Cdd:pfam02463 192 LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSkqeIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 369 KIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQNaELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIK 448
Cdd:pfam02463 272 KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE-KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 449 AAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLV---ADAEKAKGQQQSIAELQAKLLSSETEVKSKLLE 525
Cdd:pfam02463 351 REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEeelELKSEEEKEAQLLLELARQLEDLLKEEKKEELE 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 526 LDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQL--------LSLEREA 597
Cdd:pfam02463 431 ILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLeersqkesKARSGLK 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 598 AELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQ----- 672
Cdd:pfam02463 511 VLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPklklp 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 673 ----------------QDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRD 736
Cdd:pfam02463 591 lksiavleidpilnlaQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 737 LQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVE 816
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEE 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 817 glrQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQDGEVAgsqadlgdptpfELKMQLEQNEALMEKEQELRQ 896
Cdd:pfam02463 751 ---EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEE------------KLKAQEEELRALEEELKEEAE 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 897 KLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVK 976
Cdd:pfam02463 816 LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKE 895
|
730
....*....|..
gi 2099354985 977 KLKEQLHEKGEE 988
Cdd:pfam02463 896 KEEKKELEEESQ 907
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
432-986 |
3.93e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.93 E-value: 3.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 432 SEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLqKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAK 511
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVL-REINEISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 512 LLSSETEVKS---KLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLR-----L 583
Cdd:PRK03918 247 LESLEGSKRKleeKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEeeingI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 584 QEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKE---- 659
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEieee 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 660 --TLLSALPEVTVSQQDYEAWLQEFK---------------EKAVNVLKQHTVmtEPVDSALKLKEAEEAQSTLQAECEQ 722
Cdd:PRK03918 407 isKITARIGELKKEIKELKKAIEELKkakgkcpvcgrelteEHRKELLEEYTA--ELKRIEKELKEIEEKERKLRKELRE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 723 YRAILAETEGMLR-----DLQKSVEEE-EQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQStdqLKEYISLLEAq 796
Cdd:PRK03918 485 LEKVLKKESELIKlkelaEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEK---LEELKKKLAE- 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 797 LENHLQTASSERQNYTKEvegLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQDGEVAGSQADLGDPTPFE 876
Cdd:PRK03918 561 LEKKLDELEEELAELLKE---LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 877 LKMQLEQ-----NEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLG 951
Cdd:PRK03918 638 TEKRLEElrkelEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
|
570 580 590
....*....|....*....|....*....|....*
gi 2099354985 952 QAATKLQELlkvtqdqlakeRETVKKLKEQLHEKG 986
Cdd:PRK03918 718 KALERVEEL-----------REKVKKYKALLKERA 741
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
285-949 |
5.21e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 5.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 285 VAVLKRQLEEKE---KQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQ---ASYQD 358
Cdd:TIGR02169 303 IASLERSIAEKErelEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEevdKEFAE 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 359 HVNETQQLQGKIRALQEQLE--NGPNTQLARLQQENSILRDALNQATSQTESKQN---AELAKLRQECNKLMKELSEKSE 433
Cdd:TIGR02169 383 TRDELKDYREKLEKLKREINelKRELDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAA 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 434 VLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDE------VSDELRKTQTSYRSLVADAEKAKGQ------ 501
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERvrggraVEEVLKASIQGVHGTVAQLGSVGERyataie 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 502 ------------------QQSIAELQAKLLSSET-------EVKSKLLELDSLKGKLQEASS----------------EN 540
Cdd:TIGR02169 543 vaagnrlnnvvveddavaKEAIELLKRRKAGRATflplnkmRDERRDLSILSEDGVIGFAVDlvefdpkyepafkyvfGD 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 541 TRLLERIKSIEALLEAGRMREAEED-----------RDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKT 609
Cdd:TIGR02169 623 TLVVEDIEAARRLMGKYRMVTLEGElfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEN 702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 610 KNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKEtllsaLPEVTVSQQDYEAWLQEFKEKAVNV 689
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE-----IENVKSELKELEARIEELEEDLHKL 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 690 LKQhtvmtepvDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEE---EEQVWKAKLTVSEEELQKSQLQL 766
Cdd:TIGR02169 778 EEA--------LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRltlEKEYLEKEIQELQEQRIDLKEQI 849
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 767 KSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQllseSQEQLEAAKTETQKQSKELALV 846
Cdd:TIGR02169 850 KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER----KIEELEAQIEKKRKRLSELKAK 925
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 847 RQQLSEMKSHVQDGEVAGSQADLGDPTPFELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLrlaenaa 926
Cdd:TIGR02169 926 LEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL------- 998
|
730 740
....*....|....*....|...
gi 2099354985 927 asdMEEAQHLKERLEKEKKLTRD 949
Cdd:TIGR02169 999 ---EEERKAILERIEEYEKKKRE 1018
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
405-814 |
6.75e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.62 E-value: 6.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 405 QTESKQNAELAKLRQECNKLMKELSEKSEvlqqeEQQKKSWEIKAAASEKQIEQlqtsqremeaTLQKRLDEV--SDELR 482
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAE-----EDKKKADELKKAAAAKKKAD----------EAKKKAEEKkkADEAK 1437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 483 KTQTSYRSlvADAEKAKGQQQSIAE---LQAKLLSSETEVKSKLLE---LDSLKGKLQEASSENTrllERIKSIEALLEA 556
Cdd:PTZ00121 1438 KKAEEAKK--ADEAKKKAEEAKKAEeakKKAEEAKKADEAKKKAEEakkADEAKKKAEEAKKKAD---EAKKAAEAKKKA 1512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 557 GRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLE-REAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEK 635
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADElKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 636 LLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKL--------- 706
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAaeeakkaee 1672
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 707 --KEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKA-ELQST 783
Cdd:PTZ00121 1673 dkKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAeEAKKD 1752
|
410 420 430
....*....|....*....|....*....|.
gi 2099354985 784 DQLKEYISLLEAQLENHLQTASSERQNYTKE 814
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
463-992 |
1.16e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 463 QREMEATlQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAEL-QAKLLSSETEVKSKLLELDSLKGKLQEASSENT 541
Cdd:TIGR02168 178 ERKLERT-RENLDRLEDILNELERQLKSLERQAEKAERYKELKAELrELELALLVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 542 RLLERIKSIEALLEAGRMREAEEDRDLQAANE------AEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLR 615
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKelyalaNEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 616 EKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTK--ETLLSALPEVTVSQQDYEAWLQEFKEKaVNVLKQH 693
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEqlETLRSKVAQLELQIASLNNEIERLEAR-LERLEDR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 694 TVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQ---KSVEEEEQVWKAKLTVSEEELQKSQLQLKSLE 770
Cdd:TIGR02168 416 RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEealEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 771 DMIEKL-------KAELQSTDQLKEYISLL--------------EAQLENHLQTASSERQN-YTKEVEGLRQ-------- 820
Cdd:TIGR02168 496 RLQENLegfsegvKALLKNQSGLSGILGVLselisvdegyeaaiEAALGGRLQAVVVENLNaAKKAIAFLKQnelgrvtf 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 821 --LLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQDG------------EVAGSQADLGDPTPFELKMQL----- 881
Cdd:TIGR02168 576 lpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvdDLDNALELAKKLRPGYRIVTLdgdlv 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 882 -----------EQNEALMEKEQELRqKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDL 950
Cdd:TIGR02168 656 rpggvitggsaKTNSSILERRREIE-ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 2099354985 951 GQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEEDSSK 992
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEE 776
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
336-869 |
1.54e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.06 E-value: 1.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 336 EQLVTR-EREITAVQARMQASYqdhvNETQQLQGKIRALQEQLENGPNT---QLARLQQENSILRDALNQATSQTESK-- 409
Cdd:pfam15921 270 EQLISEhEVEITGLTEKASSAR----SQANSIQSQLEIIQEQARNQNSMymrQLSDLESTVSQLRSELREAKRMYEDKie 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 410 --------QNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDEL 481
Cdd:pfam15921 346 elekqlvlANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRN 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 482 RKTQTSYRSLVADAEKAKGQ-QQSIAELQAKLLSSEtEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMR 560
Cdd:pfam15921 426 MEVQRLEALLKAMKSECQGQmERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 561 EAEEDRDLQAANeAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQqktknndlreknwkaVEALTtVEKACEEKLLAAT 640
Cdd:pfam15921 505 LQEKERAIEATN-AEITKLRSRVDLKLQELQHLKNEGDHLRNVQTE---------------CEALK-LQMAEKDKVIEIL 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 641 KAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFK----EKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTL 716
Cdd:pfam15921 568 RQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKilkdKKDAKIRELEARVSDLELEKVKLVNAGSERLRA 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 717 QAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQ----KSQLQLKSLEDMIEKLKAELQSTDQ------- 785
Cdd:pfam15921 648 VKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEtttnKLKMQLKSAQSELEQTRNTLKSMEGsdghamk 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 786 ----LKEYISLLEAQ---LENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQ 858
Cdd:pfam15921 728 vamgMQKQITAKRGQidaLQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVA 807
|
570
....*....|.
gi 2099354985 859 DGEVAGSQADL 869
Cdd:pfam15921 808 NMEVALDKASL 818
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
396-941 |
2.08e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 396 RDALNQATSQTESKQNAE----LAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREME---- 467
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEdlre 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 468 ---------ATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLE-----------LD 527
Cdd:PRK02224 266 tiaetererEELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEEcrvaaqahneeAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 528 SLKGKLQEASSENTRLLERIKSIEALLEAGRmREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQ 607
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAR-EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 608 KTKNNDLREKnwkaveaLTTVEKACEE--KLLAATKAKEelahqldVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEK 685
Cdd:PRK02224 425 REREAELEAT-------LRTARERVEEaeALLEAGKCPE-------CGQPVEGSPHVETIEEDRERVEELEAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 686 AVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEE---EEQVWKAKLTVSEEELQKS 762
Cdd:PRK02224 491 VEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleaEAEEKREAAAEAEEEAEEA 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 763 QLQLKSLEDMIEKLKAELQSTDQLKEYISLLEaqlenhlqtasserqNYTKEVEGLRqllsESQEQLEAAKTETQKQSKE 842
Cdd:PRK02224 571 REEVAELNSKLAELKERIESLERIRTLLAAIA---------------DAEDEIERLR----EKREALAELNDERRERLAE 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 843 LALVRQQLSEmkshvqdgevagsqadlgdptpfelkmqlEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLA 922
Cdd:PRK02224 632 KRERKRELEA-----------------------------EFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAE 682
|
570
....*....|....*....
gi 2099354985 923 ENAAASDMEEAQHLKERLE 941
Cdd:PRK02224 683 IGAVENELEELEELRERRE 701
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
735-993 |
5.37e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.34 E-value: 5.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 735 RDLQKSVEE-EEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTK 813
Cdd:COG1196 216 RELKEELKElEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 814 EVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKshvqdgevagsqadlgdptpfELKMQLEQNEALMEKEQE 893
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE---------------------EELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 894 LRQKLTRELEEAQSSACSLQAELEKLRLAENAaasdmEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERE 973
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAE-----ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260
....*....|....*....|
gi 2099354985 974 TVKKLKEQLHEKGEEDSSKE 993
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAE 449
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
357-988 |
4.41e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 357 QDHVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQNaelaKLRQECNKLMKELSEKSEVLQ 436
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRN----QLQNTVHELEAAKCLKEDMLE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 437 QEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSD----ELRKTQTS----YRSLVADAEKAKGQQQSIaEL 508
Cdd:pfam15921 167 DSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSmstmHFRSLGSAiskiLRELDTEISYLKGRIFPV-ED 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 509 QAKLLSSETEVKSKLL---ELDSLKGKLQEASSENTRLLERIKSieALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQE 585
Cdd:pfam15921 246 QLEALKSESQNKIELLlqqHQDRIEQLISEHEVEITGLTEKASS--ARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 586 KTDQLLSlereaAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSal 665
Cdd:pfam15921 324 STVSQLR-----SELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLE-- 396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 666 pevtvSQQDYEAWLQEFKekavNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECE-QYRAILAETEGMLRDLQK--SVE 742
Cdd:pfam15921 397 -----KEQNKRLWDRDTG----NSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKvsSLT 467
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 743 EEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLl 822
Cdd:pfam15921 468 AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV- 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 823 sesQEQLEAAKTETQKQSKELALVRQQLSEMKSHV-QDGEVAGSqadlgdptpfelkMQLEQneALMEKEQELRQKLTRE 901
Cdd:pfam15921 547 ---QTECEALKLQMAEKDKVIEILRQQIENMTQLVgQHGRTAGA-------------MQVEK--AQLEKEINDRRLELQE 608
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 902 LEEAQSSACSLQAELEklrlaenAAASDME-EAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKE 980
Cdd:pfam15921 609 FKILKDKKDAKIRELE-------ARVSDLElEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKR 681
|
....*...
gi 2099354985 981 QLHEKGEE 988
Cdd:pfam15921 682 NFRNKSEE 689
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
277-507 |
1.08e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 277 TATQKGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKE---QLVTREREITAVQARMQ 353
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAleqELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 354 ASYQDHVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDAlnqatsQTESKQNAELAKLRQECNKLMKELSEKSE 433
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL------QYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2099354985 434 VLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAE 507
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
401-606 |
1.40e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 1.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 401 QATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDE 480
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 481 LRktqTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAgRMR 560
Cdd:COG4942 110 LR---ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE-LEE 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 2099354985 561 EAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQ 606
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
539-940 |
1.59e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 55.73 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 539 ENTRLLERIKSIE-ALLEAGRMREAEEDRDLQAANEAEmkQLQLRLQEKTDQLLSLEREAAELREAMEQQKT---KNNDL 614
Cdd:PRK04863 280 ERRVHLEEALELRrELYTSRRQLAAEQYRLVEMARELA--ELNEAESDLEQDYQAASDHLNLVQTALRQQEKierYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 615 REKNWKAVEALTTVEKA------CEEKLLAATKAKEELAHQL-------DVLQTRT-----------KETLLSALPEVTV 670
Cdd:PRK04863 358 EELEERLEEQNEVVEEAdeqqeeNEARAEAAEEEVDELKSQLadyqqalDVQQTRAiqyqqavqaleRAKQLCGLPDLTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 671 SQqdYEAWLQEFKEK-----------------AVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAilaetegm 733
Cdd:PRK04863 438 DN--AEDWLEEFQAKeqeateellsleqklsvAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLRE-------- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 734 lrdlQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTK 813
Cdd:PRK04863 508 ----QRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMA 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 814 EVEGLRQLLSESQEqLEAAKTETQKQSKELALVRQQLSEmkshvqdgEVAGSQAdlgdptpfelKMQLEQNeaLMEKEQE 893
Cdd:PRK04863 584 LRQQLEQLQARIQR-LAARAPAWLAAQDALARLREQSGE--------EFEDSQD----------VTEYMQQ--LLERERE 642
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 2099354985 894 LRQKltRELEEAQSSACSLQAEleklRLAENAAASDmEEAQHLKERL 940
Cdd:PRK04863 643 LTVE--RDELAARKQALDEEIE----RLSQPGGSED-PRLNALAERF 682
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
401-643 |
2.97e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 2.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 401 QATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREME---ATLQKRLDEV 477
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEaelAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 478 SDELRKTQTSYRSLVADAEKAkGQQQSIAELqaklLSSE--TEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLE 555
Cdd:COG4942 96 RAELEAQKEELAELLRALYRL-GRQPPLALL----LSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 556 AgrmrEAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEK 635
Cdd:COG4942 171 A----ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
....*...
gi 2099354985 636 LLAATKAK 643
Cdd:COG4942 247 GFAALKGK 254
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
426-807 |
3.10e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.57 E-value: 3.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 426 KELSEksEVLQQEEQQKKSWEIKAAASEKQIE------QLQTSQREMEATLQKrldeVSDELRKTQTSYR---------- 489
Cdd:COG3096 281 RELSE--RALELRRELFGARRQLAEEQYRLVEmareleELSARESDLEQDYQA----ASDHLNLVQTALRqqekieryqe 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 490 SLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKL----QEASSENTRLLERIKSIEALLEAgrmREAEED 565
Cdd:COG3096 355 DLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLadyqQALDVQQTRAIQYQQAVQALEKA---RALCGL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 566 RDLQAAN-EAEMKQLQLRLQEKTDQLLSLEREAAeLREAMEQQKTKNNDLREKNWKAVEALTTVEKACEekLLAATKAKE 644
Cdd:COG3096 432 PDLTPENaEDYLAAFRAKEQQATEEVLELEQKLS-VADAARRQFEKAYELVCKIAGEVERSQAWQTARE--LLRRYRSQQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 645 ELAHQLDVLQTRtketlLSALPEVTVSQQDYEAWLQEFKEKAvnvlkqhtvmTEPVDSALKLKEAEEAQSTLQAECEQY- 723
Cdd:COG3096 509 ALAQRLQQLRAQ-----LAELEQRLRQQQNAERLLEEFCQRI----------GQQLDAAEELEELLAELEAQLEELEEQa 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 724 ------RAILAETEGMLRDLQKSVEEEEQVWKAKLTV-------SEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYI 790
Cdd:COG3096 574 aeaveqRSELRQQLEQLRARIKELAARAPAWLAAQDAlerlreqSGEALADSQEVTAAMQQLLEREREATVERDELAARK 653
|
410
....*....|....*..
gi 2099354985 791 SLLEAQLENHLQTASSE 807
Cdd:COG3096 654 QALESQIERLSQPGGAE 670
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
425-855 |
3.18e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 425 MKELSEKSEVLQQEEQQKKSWeikaaasEKQIEQLQTSQREMEAtLQKRLDEVSDELRKTQtsyrslvadaekakgQQQS 504
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEY-------AELQEELEELEEELEE-LEAELEELREELEKLE---------------KLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 505 IAELQAKLLSSETEVKSKLLELDSLKGKLQEASsentRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQ 584
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 585 EKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSA 664
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 665 LPEVTVsqqdyeAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEE 744
Cdd:COG4717 283 LGLLAL------LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 745 EQvWKAKLTVSEEELQKSQL----QLKSLEDMIEKLKAeLQSTDQLKEYISLLEAQLENHLQTASSERQNYTKevEGLRQ 820
Cdd:COG4717 357 EE-LEEELQLEELEQEIAALlaeaGVEDEEELRAALEQ-AEEYQELKEELEELEEQLEELLGELEELLEALDE--EELEE 432
|
410 420 430
....*....|....*....|....*....|....*
gi 2099354985 821 LLSESQEQLEAAKTETQKQSKELALVRQQLSEMKS 855
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEE 467
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
529-923 |
3.67e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.57 E-value: 3.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 529 LKGKLQEASSENTRLLERIKSIEALLEAGRMREAeedrDLQAANE-AEMKQLQLRLQEKtdqllsLEREAAELREAMEqq 607
Cdd:COG3096 294 LFGARRQLAEEQYRLVEMARELEELSARESDLEQ----DYQAASDhLNLVQTALRQQEK------IERYQEDLEELTE-- 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 608 ktknnDLREKNwKAVEALTTVEKACEEKLLAATKAKEELAHQL-------DVLQTRT-----------KETLLSALPEVT 669
Cdd:COG3096 362 -----RLEEQE-EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLadyqqalDVQQTRAiqyqqavqaleKARALCGLPDLT 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 670 VSQqdYEAWLQEFKEKavnvlkQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETE---------GMLRDL--Q 738
Cdd:COG3096 436 PEN--AEDYLAAFRAK------EQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVErsqawqtarELLRRYrsQ 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 739 KSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNytkevegl 818
Cdd:COG3096 508 QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQ-------- 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 819 rqlLSESQEQLEAAKTEtQKQSKELALVRQQLSEMKSHVQDgEVAGSQADLGDPTPFeLKMQLEQ-NEALMEKEQ--ELR 895
Cdd:COG3096 580 ---RSELRQQLEQLRAR-IKELAARAPAWLAAQDALERLRE-QSGEALADSQEVTAA-MQQLLEReREATVERDElaARK 653
|
410 420
....*....|....*....|....*...
gi 2099354985 896 QKLTRELEEAQSSACSLQAELekLRLAE 923
Cdd:COG3096 654 QALESQIERLSQPGGAEDPRL--LALAE 679
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
289-494 |
4.93e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 4.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 289 KRQLEEKEKQLTAEQEDAAAARNKLRELSKELaaekakaaasesklkEQLVTREREITAVQArmqasYQDHVNETQQLQG 368
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAEL---------------DALQERREALQRLAE-----YSWDEIDVASAER 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 369 KIRALQEQLEN--GPNTQLARLQQENSILRDALNQATSQTEsKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWE 446
Cdd:COG4913 669 EIAELEAELERldASSDDLAALEEQLEELEAELEELEEELD-ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 2099354985 447 IKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVAD 494
Cdd:COG4913 748 RALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
383-991 |
8.87e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.30 E-value: 8.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 383 TQLARLQQENSILRDALNQATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEI----KAAASEKQIEQ 458
Cdd:pfam12128 272 TLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDadieTAAADQEQLPS 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 459 LQTSQREMEATLQKRLDEVSDELRKTQT----SYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLEL--DSLKGK 532
Cdd:pfam12128 352 WQSELENLEERLKALTGKHQDVTAKYNRrrskIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESElrEQLEAG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 533 LQEASSENTRLLERIKSIEALLEAGRMreAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNN 612
Cdd:pfam12128 432 KLEFNEEEYRLKSRLGELKLRLNQATA--TPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALR 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 613 DlreknwkAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSAL-----------PEVTVSQQDYEAWLQE 681
Cdd:pfam12128 510 Q-------ASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVIspellhrtdldPEVWDGSVGGELNLYG 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 682 FK--EKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYraiLAETEGMLRDLQKSVEEEEQVWK-AKLTVSEEE 758
Cdd:pfam12128 583 VKldLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQ---LVQANGELEKASREETFARTALKnARLDLRRLF 659
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 759 LQKSQLQLK---SLEDMIEKLKAELQSTD----QLKEYISLLEAQLENHLQTASSERQNYTKEVEGLR--QLLSESQE-- 827
Cdd:pfam12128 660 DEKQSEKDKknkALAERKDSANERLNSLEaqlkQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALdaQLALLKAAia 739
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 828 --------QLEAAKTETQKQSKELALVRQQLSEMKSHVQDGEVAGSQA--DLGDPTPFELKMQ---LEQNEALMEKEQEL 894
Cdd:pfam12128 740 arrsgakaELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIavRRQEVLRYFDWYQetwLQRRPRLATQLSNI 819
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 895 RQKLTR---ELEEAQSSACSLQAELEKLRLAENAAASDMEEaQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKE 971
Cdd:pfam12128 820 ERAISElqqQLARLIADTKLRRAKLEMERKASEKQQVRLSE-NLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLEDL 898
|
650 660
....*....|....*....|
gi 2099354985 972 RETVKKLKEQLHEKGEEDSS 991
Cdd:pfam12128 899 KLKRDYLSESVKKYVEHFKN 918
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
241-539 |
1.01e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.71 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 241 KTLVSTISSMAFSEGEAQQLIEILT---------ERAGIVQDTWHTATQKGDPVAVLKRQLEEKEK------QLTAEQED 305
Cdd:COG3206 67 DVLLSGLSSLSASDSPLETQIEILKsrpvlervvDKLNLDEDPLGEEASREAAIERLRKNLTVEPVkgsnviEISYTSPD 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 306 AAAARNKLRELSKE-----LAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHV-----NETQQLQGKIRALQE 375
Cdd:COG3206 147 PELAAAVANALAEAyleqnLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELES 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 376 QLENgPNTQLARLQQENSILRDALNQATSQ-TESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQkksweIKAAasEK 454
Cdd:COG3206 227 QLAE-ARAELAEAEARLAALRAQLGSGPDAlPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPD-----VIAL--RA 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 455 QIEQLQtsqREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQ 534
Cdd:COG3206 299 QIAALR---AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
....*
gi 2099354985 535 EASSE 539
Cdd:COG3206 376 EARLA 380
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
752-996 |
1.29e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 752 LTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEA 831
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 832 AKTETQKQSKELALVRQQLSEMKSHVQDGEVAGSQadlgdpTPFELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACS 911
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPE------DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 912 LQAELEKLrlaenaaASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEEDSS 991
Cdd:COG4942 169 LEAERAEL-------EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
....*
gi 2099354985 992 KEGTS 996
Cdd:COG4942 242 RTPAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
283-798 |
1.50e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 283 DPVAVLKRqLEEKEKQLTAEQEDAaaarNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQdhvnE 362
Cdd:PRK02224 203 DLHERLNG-LESELAELDEEIERY----EEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER----E 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 363 TQQLQGKIRALQEQLEngpntqlaRLQQENSILRD--ALNQATSQTESKQNAELAKLRQECNKlmkELSEKSEVLQQEEQ 440
Cdd:PRK02224 274 REELAEEVRDLRERLE--------ELEEERDDLLAeaGLDDADAEAVEARREELEDRDEELRD---RLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 441 QKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSD------ELRKTQTSYRSLVADAEKAKGQQQSIAELqakLLS 514
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDrreeieELEEEIEELRERFGDAPVDLGNAEDFLEE---LRE 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 515 SETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEA---LLEAGRMREAEEDRDLQAANEAEMKQLQLR--------- 582
Cdd:PRK02224 420 ERDELREREAELEATLRTARERVEEAEALLEAGKCPECgqpVEGSPHVETIEEDRERVEELEAELEDLEEEveeveerle 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 583 ----LQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVL----- 653
Cdd:PRK02224 500 raedLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVaelns 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 654 -QTRTKETL--LSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEpvdsalKLKEAEEAQSTLQAECEQYRailaeT 730
Cdd:PRK02224 580 kLAELKERIesLERIRTLLAAIADAEDEIERLREKREALAELNDERRE------RLAEKRERKRELEAEFDEAR-----I 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2099354985 731 EGMLRDLQKSVEEEEQVwkakltvsEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLE 798
Cdd:PRK02224 649 EEAREDKERAEEYLEQV--------EEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVE 708
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
261-846 |
1.84e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.15 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 261 IEILTERAGIVQDTWHTATQKGDP--VAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQL 338
Cdd:pfam12128 363 LKALTGKHQDVTAKYNRRRSKIKEqnNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRL 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 339 VTREREITAVQARMQASyQDHVNETQQLQGKIRALQEQLENGpNTQLARLQQENSILRDALNQAtSQTESKQNAELAKLR 418
Cdd:pfam12128 443 KSRLGELKLRLNQATAT-PELLLQLENFDERIERAREEQEAA-NAEVERLQSELRQARKRRDQA-SEALRQASRRLEERQ 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 419 QECNKLMKELSEKS----EVLQQEEQQKKSWEIKAAASE--------KQIEQLQTSQREMEATLQKRLD--EVSDELRKT 484
Cdd:pfam12128 520 SALDELELQLFPQAgtllHFLRKEAPDWEQSIGKVISPEllhrtdldPEVWDGSVGGELNLYGVKLDLKriDVPEWAASE 599
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 485 QTsYRSLVADAEKAKGQQQSIAELQAKllssetevkskllELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEE 564
Cdd:pfam12128 600 EE-LRERLDKAEEALQSAREKQAAAEE-------------QLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSE 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 565 DRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKAceekLLAATKAKE 644
Cdd:pfam12128 666 KDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLA----LLKAAIAAR 741
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 645 ELAH--QLDVLQTRTKETLLSALP-EVTVSqqDYEAWLQEFKEKAVNVLKQHTVMTEPVDSAlklkeaeeaQSTLQAECE 721
Cdd:pfam12128 742 RSGAkaELKALETWYKRDLASLGVdPDVIA--KLKREIRTLERKIERIAVRRQEVLRYFDWY---------QETWLQRRP 810
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 722 QYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAEL---------QSTDQLKEYISL 792
Cdd:pfam12128 811 RLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMsklatlkedANSEQAQGSIGE 890
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 2099354985 793 LEAQLENHLQTASSERQNYTKEVEGLRQLL-----SESQEQLEAAKTETQKQSKELALV 846
Cdd:pfam12128 891 RLAQLEDLKLKRDYLSESVKKYVEHFKNVIadhsgSGLAETWESLREEDHYQNDKGIRL 949
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
453-816 |
2.13e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 453 EKQIEQLQTSQREMEaTLQKRLDEVSDELRKTQTSYrslvADAEKAKGQQQSIAELQAKLLSSEteVKSKLLELDSLKGK 532
Cdd:TIGR02169 173 EKALEELEEVEENIE-RLDLIIDEKRQQLERLRRER----EKAERYQALLKEKREYEGYELLKE--KEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 533 LQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNN 612
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 613 DLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLqtrtkETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQ 692
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL-----EDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 693 HTVMTEPVDSAL-KLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQvwkakltvseeELQKSQLQLKSLED 771
Cdd:TIGR02169 401 INELKRELDRLQeELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW-----------KLEQLAADLSKYEQ 469
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2099354985 772 MIEKLKAELQSTD----QLKEYISLLEAQlenhlQTASSERQNYTKEVE 816
Cdd:TIGR02169 470 ELYDLKEEYDRVEkelsKLQRELAEAEAQ-----ARASEERVRGGRAVE 513
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
701-968 |
2.39e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.84 E-value: 2.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 701 DSALKLKEAEEAQSTLQAECEQyrailaeTEGMLRDLQKSVEEEEQVwKAKLTVSEEELQKSQLQLksledmiEKLKAEL 780
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQ-------TLALLDKIDRQKEETEQL-KQQLAQAPAKLRQAQAEL-------EALKDDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 781 QSTDQlKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMK------ 854
Cdd:PRK11281 111 DEETR-ETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKvggkal 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 855 SHVQDGEVAGSQADLGDPTPFElKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAEN----AAASDM 930
Cdd:PRK11281 190 RPSQRVLLQAEQALLNAQNDLQ-RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSektvQEAQSQ 268
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2099354985 931 EEAQH------LKERLEKEKKLTRDLGQAATKLQELlkvTQDQL 968
Cdd:PRK11281 269 DEAARiqanplVAQELEINLQLSQRLLKATEKLNTL---TQQNL 309
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
345-976 |
3.76e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 51.23 E-value: 3.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 345 ITAVQARMQASYQD-HVNETQQLQGKIRALQEQL------ENGPNTQLARLQQEN---SILRDALNQATSQTESKQNaEL 414
Cdd:COG5022 748 ATRIQRAIRGRYLRrRYLQALKRIKKIQVIQHGFrlrrlvDYELKWRLFIKLQPLlslLGSRKEYRSYLACIIKLQK-TI 826
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 415 AKLRQECNKLMKELSEKSEVL------------QQEEQQKKSWEIKAAA----SEKQIEQLQTSQREME--ATLQKRLDE 476
Cdd:COG5022 827 KREKKLRETEEVEFSLKAEVLiqkfgrslkakkRFSLLKKETIYLQSAQrvelAERQLQELKIDVKSISslKLVNLELES 906
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 477 VSDELRKTQTSYRSlvadaEKAKGQQQSIAELQAKLLSSETEV-KSKLLELDSLKGKLQEassENTRLLERIKSIEALLE 555
Cdd:COG5022 907 EIIELKKSLSSDLI-----ENLEFKTELIARLKKLLNNIDLEEgPSIEYVKLPELNKLHE---VESKLKETSEEYEDLLK 978
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 556 agrmREAEEDRDLQAANEaEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKnwKAVEALTTVEKACEEK 635
Cdd:COG5022 979 ----KSTILVREGNKANS-ELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKII--SSESTELSILKPLQKL 1051
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 636 LLAATKAKEELAHQLDVLQTRTKETLLSALPEVTvsQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALK--------LK 707
Cdd:COG5022 1052 KGLLLLENNQLQARYKALKLRRENSLLDDKQLYQ--LESTENLLKTINVKDLEVTNRNLVKPANVLQFIVaqmiklnlLQ 1129
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 708 EAEEAQSTLQAECEQYRAILAETEGMLRDL--QKSVEEEEQVWKAKLTVSEEELQKSQL---------QLKSLEDMIEKL 776
Cdd:COG5022 1130 EISKFLSQLVNTLEPVFQKLSVLQLELDGLfwEANLEALPSPPPFAALSEKRLYQSALYdeksklsssEVNDLKNELIAL 1209
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 777 KAELQSTDQLKEyislleaqlenHLQTASSERQNYTKEVEGLrqllsesQEQLEAAKTETQKQSKElalVRQQLSEMKSH 856
Cdd:COG5022 1210 FSKIFSGWPRGD-----------KLKKLISEGWVPTEYSTSL-------KGFNNLNKKFDTPASMS---NEKLLSLLNSI 1268
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 857 VQDGEVAGSQADLGDPTPFELK--MQLEQNEALMEKEQELRQKLTRELEEAQSSacslqaELEKLRLAENAAASdmEEAQ 934
Cdd:COG5022 1269 DNLLSSYKLEEEVLPATINSLLqyINVGLFNALRTKASSLRWKSATEVNYNSEE------LDDWCREFEISDVD--EELE 1340
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 2099354985 935 HLKERLEKEKKLTRDLgqaaTKLQELLKVTQDQLAKERETVK 976
Cdd:COG5022 1341 ELIQAVKVLQLLKDDL----NKLDELLDACYSLNPAEIQNLK 1378
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
241-980 |
3.76e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 3.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 241 KTLVSTISSMAFSEGEAQQLIEILTERAGIVQDTWHTATQKGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKEL 320
Cdd:pfam02463 272 KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKR 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 321 AAEKAKAAASESKLKEQLVTREREITAvqarmQASYQDHVNETQQLQGKIRALQEQLENGPNTQLARLQQENSILRDALN 400
Cdd:pfam02463 352 EAEEEEEEELEKLQEKLEQLEEELLAK-----KKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKK 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 401 QATSQTESKQ------NAELAKLRQECNKLMKELSEKSEVLQQEEQQKKswEIKAAASEKQIEQLQTSQREMEATLQ--- 471
Cdd:pfam02463 427 EELEILEEEEesielkQGKLTEEKEELEKQELKLLKDELELKKSEDLLK--ETQLVKLQEQLELLLSRQKLEERSQKesk 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 472 -KRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEV----------KSKLLELDSLKGKLQEASSEN 540
Cdd:pfam02463 505 aRSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVsatadeveerQKLVRALTELPLGARKLRLLI 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 541 TRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWK 620
Cdd:pfam02463 585 PKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEV 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 621 AVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPV 700
Cdd:pfam02463 665 KASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQK 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 701 DSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAEL 780
Cdd:pfam02463 745 IDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLI 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 781 QSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQDG 860
Cdd:pfam02463 825 EQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEE 904
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 861 EVAGSQADLGDPTPFELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAEnaaASDMEEAQHLKERL 940
Cdd:pfam02463 905 ESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLL---AKEELGKVNLMAIE 981
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 2099354985 941 EKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKE 980
Cdd:pfam02463 982 EFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
360-809 |
3.89e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 3.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 360 VNETQQLQGKIRALQEQLENGpNTQLARLQQENSILRDALNQATSQtesKQNAELAKLRQECNKLMKELSEKSEVLQQEE 439
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKL---LQLLPLYQELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 440 QQKKSWEIKAAASEKQIEQLqtsQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAkgqQQSIAELQAKLLSSETEV 519
Cdd:COG4717 156 EELRELEEELEELEAELAEL---QEELEELLEQLSLATEEELQDLAEELEELQQRLAEL---EEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 520 KSklLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRD---------LQAANEAEMKQLQLRLQEKTDQL 590
Cdd:COG4717 230 EQ--LENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIagvlflvlgLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 591 LSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELahQLDVLQTRTKETLLSALPEvtv 670
Cdd:COG4717 308 QALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--QLEELEQEIAALLAEAGVE--- 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 671 SQQDYEAWLQEFKE--KAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQvw 748
Cdd:COG4717 383 DEEELRAALEQAEEyqELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEA-- 460
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2099354985 749 kakltvsEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQ 809
Cdd:COG4717 461 -------ELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
513-988 |
4.08e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 4.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 513 LSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEaLLEAGRMREAEEDRDLQAANEAEMKQLQL-------RLQE 585
Cdd:TIGR00618 138 LDYKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLD-QYTQLALMEFAKKKSLHGKAELLTLRSQLltlctpcMPDT 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 586 KTDQLLSLEREAAELREAMEQQKTKNNDLREKNwKAVEALTTVEKACEEKLLAATKAKEELAH----QLDVLQTRTKETL 661
Cdd:TIGR00618 217 YHERKQVLEKELKHLREALQQTQQSHAYLTQKR-EAQEEQLKKQQLLKQLRARIEELRAQEAVleetQERINRARKAAPL 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 662 LSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSV 741
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 742 EEEEQV--WKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLR 819
Cdd:TIGR00618 376 TLTQHIhtLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 820 QLLSESQEQLEAAKTETQkQSKELALVRQQLSEMKShvqdgeVAGSQADLGDPTPFELKMQLEQNEALMEKEQELrQKLT 899
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQ-QLQTKEQIHLQETRKKA------VVLARLLELQEEPCPLCGSCIHPNPARQDIDNP-GPLT 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 900 RELEEAQSSACSLQAELEKLR----LAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETV 975
Cdd:TIGR00618 528 RRMQRGEQTYAQLETSEEDVYhqltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE 607
|
490
....*....|...
gi 2099354985 976 KKLKEQLHEKGEE 988
Cdd:TIGR00618 608 DMLACEQHALLRK 620
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
446-993 |
5.39e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.91 E-value: 5.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 446 EIKAAASEKQIEQLQTSQREMEATLQKrlDEVSDElrktqtSYRSLVADAEKAKGQQQSIAELQAKllssETEVKSKLLE 525
Cdd:PTZ00121 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKE--DNRADE------ATEEAFGKAEEAKKTETGKAEEARK----AEEAKKKAED 1126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 526 LDslkgKLQEA-SSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEmkqlQLRLQEKTDQLLSLeREAAELREAM 604
Cdd:PTZ00121 1127 AR----KAEEArKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAE----DAKKAEAARKAEEV-RKAEELRKAE 1197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 605 EQQKTKNNDLREKNWKAVEalttVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQ---- 680
Cdd:PTZ00121 1198 DARKAEAARKAEEERKAEE----ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQaaik 1273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 681 -EFKEKAVNVLKqhtvmTEPVDSALKLKEAEEAQSTLQAECEQYRAILA-ETEGMLRDLQKSVEEEEQVWKAKLTVSEEE 758
Cdd:PTZ00121 1274 aEEARKADELKK-----AEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 759 LQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLEN--HLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTET 836
Cdd:PTZ00121 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAE 1428
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 837 QK----QSKELALVRQQLSEMKSHVQD---GEVAGSQADLGDPTPfELKMQLEQN---EALMEKEQELRQKL--TRELEE 904
Cdd:PTZ00121 1429 EKkkadEAKKKAEEAKKADEAKKKAEEakkAEEAKKKAEEAKKAD-EAKKKAEEAkkaDEAKKKAEEAKKKAdeAKKAAE 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 905 AQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHE 984
Cdd:PTZ00121 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
|
....*....
gi 2099354985 985 KGEEDSSKE 993
Cdd:PTZ00121 1588 KAEEARIEE 1596
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
726-993 |
5.41e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 5.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 726 ILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTAS 805
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 806 SERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEmkshvqdgevagsqadlgdptpfeLKMQLEQNE 885
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE------------------------LEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 886 ALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQ 965
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
250 260
....*....|....*....|....*...
gi 2099354985 966 DQLAKERETVKKLKEQLHEKGEEDSSKE 993
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAELKE 437
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
729-988 |
6.45e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 729 ETEGMLRDLQKSVEEeeqvwkakLTVSEEELQKSQLQLKSLEDM------IEKLKAELQSTDQLKEYISLLEAQLENHLq 802
Cdd:COG4913 222 DTFEAADALVEHFDD--------LERAHEALEDAREQIELLEPIrelaerYAAARERLAELEYLRAALRLWFAQRRLEL- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 803 tasserqnYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEmkshvqdgeVAGSQADlgdptpfELKMQLE 882
Cdd:COG4913 293 --------LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG---------NGGDRLE-------QLEREIE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 883 QnealmekeqelrqkLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQhlkerlekekkltRDLGQAATKLQELLK 962
Cdd:COG4913 349 R--------------LERELEERERRRARLEALLAALGLPLPASAEEFAALR-------------AEAAALLEALEEELE 401
|
250 260
....*....|....*....|....*.
gi 2099354985 963 VTQDQLAKERETVKKLKEQLHEKGEE 988
Cdd:COG4913 402 ALEEALAEAEAALRDLRRELRELEAE 427
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
289-920 |
1.36e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.40 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 289 KRQLEEKEKQLTAEQEDAAA----ARNKLRELSKELAAEKAKAAASESKLKEQ------LVTREREITAVQARMQASYQD 358
Cdd:pfam01576 428 RAELAEKLSKLQSELESVSSllneAEGKNIKLSKDVSSLESQLQDTQELLQEEtrqklnLSTRLRQLEDERNSLQEQLEE 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 359 HVNETQQLQGKIRALQEQLEN------GPNTQLARLQQENSILRDALNQATSQTESKQnAELAKLRQECNKLMKELSEKS 432
Cdd:pfam01576 508 EEEAKRNVERQLSTLQAQLSDmkkkleEDAGTLEALEEGKKRLQRELEALTQQLEEKA-AAYDKLEKTKNRLQQELDDLL 586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 433 EVLQQEEQQKKSWEIKaaasEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSI------- 505
Cdd:pfam01576 587 VDLDHQRQLVSNLEKK----QKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELertnkql 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 506 -AELQAkLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMR--------EAEEDRDLQAANEAEm 576
Cdd:pfam01576 663 rAEMED-LVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRlevnmqalKAQFERDLQARDEQG- 740
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 577 kqlqlrlQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKnwkaveaLTTVEKACEEKLLAATKAKEELAHQLDVLQTR 656
Cdd:pfam01576 741 -------EEKRRQLVKQVRELEAELEDERKQRAQAVAAKKK-------LELDLKELEAQIDAANKGREEAVKQLKKLQAQ 806
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 657 TKEtLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLK-EAEEAQSTLQAECEQY---RAILAETEG 732
Cdd:pfam01576 807 MKD-LQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARrQAQQERDELADEIASGasgKSALQDEKR 885
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 733 MLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQT-ASSERQNY 811
Cdd:pfam01576 886 RLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQNKELKAKLQEmEGTVKSKF 965
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 812 TKEVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQD----GEVAGSQADLGDPTPFELKMQLEQNEAL 887
Cdd:pfam01576 966 KSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDerrhADQYKDQAEKGNSRMKQLKRQLEEAEEE 1045
|
650 660 670
....*....|....*....|....*....|...
gi 2099354985 888 MEKEQELRQKLTRELEEAQSSACSLQAELEKLR 920
Cdd:pfam01576 1046 ASRANAARRKLQRELDDATESNESMNREVSTLK 1078
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
370-984 |
1.37e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 1.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 370 IRALQEQLENGPNTQLARLQQENSILRDALNQATSQTESkqnAELAKLRQECNKLMKELSEksevLQQEEQQKKSWEIKA 449
Cdd:pfam12128 202 IVAILEDDGVVPPKSRLNRQQVEHWIRDIQAIAGIMKIR---PEFTKLQQEFNTLESAELR----LSHLHFGYKSDETLI 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 450 AASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEkakgQQQSIAELQAKLLSSE--TEVKSKLLELD 527
Cdd:pfam12128 275 ASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDR----SELEALEDQHGAFLDAdiETAAADQEQLP 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 528 SLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEED-RDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQ 606
Cdd:pfam12128 351 SWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNnRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEA 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 607 QKTKNNDlreknwkavEALTTVEKACEEKL-LAATKAKEELAHQL---DVLQTRTKETLLSALPEVTvSQQDYEAWLQEF 682
Cdd:pfam12128 431 GKLEFNE---------EEYRLKSRLGELKLrLNQATATPELLLQLenfDERIERAREEQEAANAEVE-RLQSELRQARKR 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 683 KEKAVNVLKQHTVMTEPVDSAL-KLKEAEEAQS--------TLQAECEQYRAILAETEGMLR-DLQKSVEEEEQvwKAKL 752
Cdd:pfam12128 501 RDQASEALRQASRRLEERQSALdELELQLFPQAgtllhflrKEAPDWEQSIGKVISPELLHRtDLDPEVWDGSV--GGEL 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 753 TVSEEELQKSQLQLKSLEDMIEKLKAEL-----------QSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQL 821
Cdd:pfam12128 579 NLYGVKLDLKRIDVPEWAASEEELRERLdkaeealqsarEKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRL 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 822 LSESQ-------EQLEAAK----TETQKQSKELALVRQQLSEMKSHVQDGEVAGSQADLGDPTPFE--LKMQLEQNEALM 888
Cdd:pfam12128 659 FDEKQsekdkknKALAERKdsanERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEgaLDAQLALLKAAI 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 889 EKEQELRQKLTRELEEAQSSAC------------------SLQAELEKLRLAENAAASDMEEAQH--------LKERLEK 942
Cdd:pfam12128 739 AARRSGAKAELKALETWYKRDLaslgvdpdviaklkreirTLERKIERIAVRRQEVLRYFDWYQEtwlqrrprLATQLSN 818
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 2099354985 943 EKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHE 984
Cdd:pfam12128 819 IERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSE 860
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
450-608 |
1.39e-05 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 48.69 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 450 AASEKQIEQL-QTSQREMEATLQKRLDEVSDELRKTQ---TSYRS--LVADAEK-AKGQQQSIAELQAKLLSSETEvksk 522
Cdd:COG3524 161 AESEELVNQLsERAREDAVRFAEEEVERAEERLRDARealLAFRNrnGILDPEAtAEALLQLIATLEGQLAELEAE---- 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 523 lleLDSLKGKLQEASSENTRLLERIKSIEALLEA--GRMREAEEDRDLqAANEAEMKQLQLRLQEKTDQLLS--LEREAA 598
Cdd:COG3524 237 ---LAALRSYLSPNSPQVRQLRRRIAALEKQIAAerARLTGASGGDSL-ASLLAEYERLELEREFAEKAYTSalAALEQA 312
|
170
....*....|
gi 2099354985 599 ELrEAMEQQK 608
Cdd:COG3524 313 RI-EAARQQR 321
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
367-610 |
1.52e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 1.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 367 QGKIRALQEQLENGPNTQLARLQQENSILR-DALNQATSQTESKQNAELAKL---RQECNKLMKELSE--KSEVLQQEEQ 440
Cdd:pfam17380 332 QAAIYAEQERMAMERERELERIRQEERKRElERIRQEEIAMEISRMRELERLqmeRQQKNERVRQELEaaRKVKILEEER 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 441 QKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVS-------------DELRKTQTSYRSLVADAEKAKGQQQSIAE 507
Cdd:pfam17380 412 QRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMErvrleeqerqqqvERLRQQEEERKRKKLELEKEKRDRKRAEE 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 508 LQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRlleriksiEALLEAGRMREAEEDRDLQAANEaEMKQLQLRLQEKT 587
Cdd:pfam17380 492 QRRKILEKELEERKQAMIEEERKRKLLEKEMEERQ--------KAIYEEERRREAEEERRKQQEME-ERRRIQEQMRKAT 562
|
250 260
....*....|....*....|....*.
gi 2099354985 588 DQ---LLSLEREAAELREAMEQQKTK 610
Cdd:pfam17380 563 EErsrLEAMEREREMMRQIVESEKAR 588
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
703-929 |
1.78e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.86 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 703 ALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQK-----SVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLK 777
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQknglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 778 AELQSTD-------------QLKEYISLLEAQLENHLQT---ASSERQNYTKEVEGLRQLL-SESQEQLEAAKTETQKQS 840
Cdd:COG3206 247 AQLGSGPdalpellqspviqQLRAQLAELEAELAELSARytpNHPDVIALRAQIAALRAQLqQEAQRILASLEAELEALQ 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 841 KELALVRQQLSEMKSHVQdgevagsqadlgdptpfelkmqleqneALMEKEQELRQkLTRELEEAQSSACSLQAELEKLR 920
Cdd:COG3206 327 AREASLQAQLAQLEARLA---------------------------ELPELEAELRR-LEREVEVARELYESLLQRLEEAR 378
|
....*....
gi 2099354985 921 LAENAAASD 929
Cdd:COG3206 379 LAEALTVGN 387
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
361-582 |
1.94e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 361 NETQQLQGKIRALQEQLENgPNTQLARLQQENSILRDALNQATSQTeSKQNAELAKLRQECNKLMKELSEKSevlQQEEQ 440
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAE-LEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAELAELE---KEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 441 QKKSWEIKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKT---QTSYRSLVADAEKAKGQQQSIAELQAKLLSSET 517
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLqylKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2099354985 518 EVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLR 582
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
312-539 |
2.12e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.47 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 312 KLRELSKELAAEKAKAAASESKLKEQ--LVTREREITAV-QARMQASYQDHVNETQQLQGKIRALQEQLEngpNTQLARL 388
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQQQIKTYnkNIEEQRKKNGEnIARKQNKYDELVEEAKTIKAEIEELTDELL---NLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 389 QQENSI--LRDALNQATSQTESKQN-AELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQtsQRE 465
Cdd:PHA02562 252 DPSAALnkLNTAAAKIKSKIEQFQKvIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELE--EIM 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2099354985 466 ME-ATLQKRLDEVSDELRKTQTSYRSLVADAEKAKgqqQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSE 539
Cdd:PHA02562 330 DEfNEQSKKLLELKNKISTNKQSLITLVDKAKKVK---AAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
654-997 |
2.29e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 654 QTRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETEGM 733
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERM 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 734 LRDLQKSVE---------EEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKeyisLLEAQLENHLQTA 804
Cdd:pfam17380 343 AMERERELErirqeerkrELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVK----ILEEERQRKIQQQ 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 805 SSERQNYTKEVEGLRQ-----LLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQDGEVAG-SQADLGDPTPFELK 878
Cdd:pfam17380 419 KVEMEQIRAEQEEARQrevrrLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKrDRKRAEEQRRKILE 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 879 MQLEQNEALMEKEQELRQKLTRELEEAQSSAcslqAELEKLRLAenaaasdmEEAQHLKERLEKEKKLTRDLGQAATKLQ 958
Cdd:pfam17380 499 KELEERKQAMIEEERKRKLLEKEMEERQKAI----YEEERRREA--------EEERRKQQEMEERRRIQEQMRKATEERS 566
|
330 340 350
....*....|....*....|....*....|....*....
gi 2099354985 959 ELlkvtqDQLAKERETVKKLKEQLHEKGEEDSSKEGTSV 997
Cdd:pfam17380 567 RL-----EAMEREREMMRQIVESEKARAEYEATTPITTI 600
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
290-685 |
2.44e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 290 RQLEEKEKQLTAEQEDAAAARNKLRELSKE---LAAEKAKAAASESKLKEQLVTREREITAVQARMQ-ASYQDHVNETQQ 365
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEEleeLEAELEELREELEKLEKLLQLLPLYQELEALEAElAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 366 LQGKIRALQEQLENGpNTQLARLQQENSILRDALNQATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSW 445
Cdd:COG4717 154 RLEELRELEEELEEL-EAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 446 EIK--AAASEKQIEQLQTSQR------EMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSET 517
Cdd:COG4717 233 ENEleAAALEERLKEARLLLLiaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 518 EVKSKLLELDSLKGKLQ-EASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKT-DQLLSLER 595
Cdd:COG4717 313 LEELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDeEELRAALE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 596 EAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKA-CEEKLLAATKAKEELAHQLDVLQTRTKEtlLSALPEVTVSQQD 674
Cdd:COG4717 393 QAEEYQELKEELEELEEQLEELLGELEELLEALDEEeLEEELEELEEELEELEEELEELREELAE--LEAELEQLEEDGE 470
|
410
....*....|.
gi 2099354985 675 YEAWLQEFKEK 685
Cdd:COG4717 471 LAELLQELEEL 481
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
516-993 |
3.09e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.11 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 516 ETEVKSKLLELDSlkgklQEASSENTRLLERIKSIEALLEA--GRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSL 593
Cdd:PRK02224 182 LSDQRGSLDQLKA-----QIEEKEEKDLHERLNGLESELAEldEEIERYEEQREQARETRDEADEVLEEHEERREELETL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 594 EREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAA---TKAKEELAHQLDVLQTRtKETLLSALPEVTV 670
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAgldDADAEAVEARREELEDR-DEELRDRLEECRV 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 671 SQQDYEAWLQEFKEKAVnvlkqhtvmtepvDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEeeqvwka 750
Cdd:PRK02224 336 AAQAHNEEAESLREDAD-------------DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE------- 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 751 kltvSEEELQKSQLQLKSLEDMIEKLKAELqstDQLKEYISLLEAQLENhlqtasserqnytkevegLRQLLSESQEQLE 830
Cdd:PRK02224 396 ----LRERFGDAPVDLGNAEDFLEELREER---DELREREAELEATLRT------------------ARERVEEAEALLE 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 831 AAKTETQKQSKE-------LALVRQQLSEMKSHVQDGEVAGSQADLGDPTPFELKMQLEQNEALMEKEQELRQKLTR--- 900
Cdd:PRK02224 451 AGKCPECGQPVEgsphvetIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAErre 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 901 ELEEAQSSACSLQAELEKLRL----AENAAASDMEEAQhlkERLEKEKKLTRDLGQAATKLQELLKV--TQDQLAKERET 974
Cdd:PRK02224 531 TIEEKRERAEELRERAAELEAeaeeKREAAAEAEEEAE---EAREEVAELNSKLAELKERIESLERIrtLLAAIADAEDE 607
|
490 500
....*....|....*....|
gi 2099354985 975 VKKLKEQLHEKGE-EDSSKE 993
Cdd:PRK02224 608 IERLREKREALAElNDERRE 627
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
383-933 |
3.36e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.89 E-value: 3.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 383 TQLARLQQENSILRDALNQATSQTESKQNA-------ELAK---LRQECNKLMKELSEKSEVLQQEEQQKK------SWE 446
Cdd:pfam10174 3 AQLRDLQRENELLRRELDIKESKLGSSMNSiktfwspELKKeraLRKEEAARISVLKEQYRVTQEENQHLQltiqalQDE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 447 IKAAASEKQIEQLQTSQREMEATLQKRLDEVSDE-LRKTQTSYRSLVADAE---KAKGQQQSIAELQAKLLSSETEVKSK 522
Cdd:pfam10174 83 LRAQRDLNQLLQQDFTTSPVDGEDKFSTPELTEEnFRRLQSEHERQAKELFllrKTLEEMELRIETQKQTLGARDESIKK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 523 LLELDSLKGKLQEASSENTRLLERIKSIEALL------------EAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQL 590
Cdd:pfam10174 163 LLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLghlevlldqkekENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTKI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 591 LSLEREAAELREAMEQQKTK---NNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTkETL------ 661
Cdd:pfam10174 243 SSLERNIRDLEDEVQMLKTNgllHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKL-ETLtnqnsd 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 662 ----LSALPEVTVSQQDYEAWLQ-EFKEKAVNVLKQHTVMTEPVDsalKLKEAEEAQSTLQAECEQYRAILAETEGMLRD 736
Cdd:pfam10174 322 ckqhIEVLKESLTAKEQRAAILQtEVDALRLRLEEKESFLNKKTK---QLQDLTEEKSTLAGEIRDLKDMLDVKERKINV 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 737 LQKSVEEeeqvwkakltvSEEELQKSQLQLKSLEDMIEKLKAELQSTDQ----LKEYISLLEAQLENHLQTASSERQNYT 812
Cdd:pfam10174 399 LQKKIEN-----------LQEQLRDKDKQLAGLKERVKSLQTDSSNTDTalttLEEALSEKERIIERLKEQREREDRERL 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 813 KEVEGLRQLLSESQEQLEAAKTETQKQSkelalvrQQLSEMKSHvqdgevAGSQAdlgdPTPFELKMQLEQNEALMEKEQ 892
Cdd:pfam10174 468 EELESLKKENKDLKEKVSALQPELTEKE-------SSLIDLKEH------ASSLA----SSGLKKDSKLKSLEIAVEQKK 530
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 2099354985 893 ELRQKLTRELEEAQSSACSLQAELE---KLRLAENAAASDMEEA 933
Cdd:pfam10174 531 EECSKLENQLKKAHNAEEAVRTNPEindRIRLLEQEVARYKEES 574
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
429-988 |
4.86e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 4.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 429 SEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLqkRLDEVSDELRKTQ-----TSYRSLVADAEKAKGQ-- 501
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE--RYQALLKEKREYEgyellKEKEALERQKEAIERQla 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 502 --QQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASS-ENTRLLERIKSIEAlleagrmrEAEEDRDLQAANEAEMKQ 578
Cdd:TIGR02169 248 slEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEA--------EIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 579 LQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLRE--KNWKAVEALTTVEKACEEKLLAATKAK--------EELAH 648
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEeyAELKEELEDLRAELEEVDKEFAETRDElkdyreklEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 649 QLDVLQtRTKETLLSALPEVTVSQQDYEAWLQEFKEKavnvlkQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILA 728
Cdd:TIGR02169 400 EINELK-RELDRLQEELQRLSEELADLNAAIAGIEAK------INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 729 ETEGMLRDLQK---SVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEK---LKAELQSTDQlkEYISLLEAQLENHLQ 802
Cdd:TIGR02169 473 DLKEEYDRVEKelsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGvhgTVAQLGSVGE--RYATAIEVAAGNRLN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 803 TASSERQ-------NYTKEVEG----------LRQLLSESQEQLEAA---------KTETQKQS------------KELA 844
Cdd:TIGR02169 551 NVVVEDDavakeaiELLKRRKAgratflplnkMRDERRDLSILSEDGvigfavdlvEFDPKYEPafkyvfgdtlvvEDIE 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 845 LVRQQLSEMKSHVQDGEVAGSQadlGDPTPFELKMQLEQNEALMEKEQELRqkLTRELEEAQSSACSLQAELEKLRLAEN 924
Cdd:TIGR02169 631 AARRLMGKYRMVTLEGELFEKS---GAMTGGSRAPRGGILFSRSEPAELQR--LRERLEGLKRELSSLQSELRRIENRLD 705
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2099354985 925 AAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEE 988
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE 769
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
410-659 |
6.23e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 6.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 410 QNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREmeatLQKRLDEVSDELRKTQTSYR 489
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA----LEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 490 SLVADAEKakgQQQSIAELQAKLLSSETEVKSKLLeldslkgKLQEASSENTRLLERIKSIealleagrmreAEEDRDLQ 569
Cdd:COG4942 94 ELRAELEA---QKEELAELLRALYRLGRQPPLALL-------LSPEDFLDAVRRLQYLKYL-----------APARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 570 AANEAEMKQLQLRLQEKTDQLLSLEREAAELreamEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQ 649
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAEL----EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|
gi 2099354985 650 LDVLQTRTKE 659
Cdd:COG4942 229 IARLEAEAAA 238
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
334-981 |
6.24e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 6.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 334 LKEQLVTREREITAVQARMQASYQDHVNETQQLQGKIRALQEQLENgpntqLARLQQENSILRDALNQATSQTESK---Q 410
Cdd:pfam01576 62 MRARLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQD-----LEEQLDEEEAARQKLQLEKVTTEAKikkL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 411 NAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAaaseKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRS 490
Cdd:pfam01576 137 EEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKA----KSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRK 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 491 LVADAEKAkgqQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALL----------EAGRMR 560
Cdd:pfam01576 213 LEGESTDL---QEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQIselqedleseRAARNK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 561 EAEEDRDLQAANEAEMKQLQLRLQEKTDQL---LSLEREAAELREAMEQQKTKNN----DLREKNWKAVEALTTVEKACE 633
Cdd:pfam01576 290 AEKQRRDLGEELEALKTELEDTLDTTAAQQelrSKREQEVTELKKALEEETRSHEaqlqEMRQKHTQALEELTEQLEQAK 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 634 EKLLAATKAKEELAHQLDVLQTRTKeTLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTvmtepvdsalklkEAEEAQ 713
Cdd:pfam01576 370 RNKANLEKAKQALESENAELQAELR-TLQQAKQDSEHKRKKLEGQLQELQARLSESERQRA-------------ELAEKL 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 714 STLQAECEQYRAILAETEGMLRDLQKSVEE-EEQVWKAKLTVSEEELQKSQL--QLKSLED----MIEKLKAELQSTDQL 786
Cdd:pfam01576 436 SKLQSELESVSSLLNEAEGKNIKLSKDVSSlESQLQDTQELLQEETRQKLNLstRLRQLEDernsLQEQLEEEEEAKRNV 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 787 KEYISLLEAQLEN----------HLQTASSERQNYTKEVEGLRQLLSE---SQEQLEAAKTETQKQSKELALVRQQLSEM 853
Cdd:pfam01576 516 ERQLSTLQAQLSDmkkkleedagTLEALEEGKKRLQRELEALTQQLEEkaaAYDKLEKTKNRLQQELDDLLVDLDHQRQL 595
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 854 KSHVQDGEVAGSQAdLGDPTPFELKMQLEQNEALME-KEQELRQ-KLTRELEEAQSSACSLQAELEKLRLAENAAASDME 931
Cdd:pfam01576 596 VSNLEKKQKKFDQM-LAEEKAISARYAEERDRAEAEaREKETRAlSLARALEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 2099354985 932 EAQHLKERLEKEKK-LTRDLGQAATKLQEL---LKVTQDQLAKERETVKKLKEQ 981
Cdd:pfam01576 675 DVGKNVHELERSKRaLEQQVEEMKTQLEELedeLQATEDAKLRLEVNMQALKAQ 728
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
706-988 |
6.26e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 47.25 E-value: 6.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 706 LKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEE-------QVWKAkLTVSEEELQKSQLQLKSLEDMIEKLKA 778
Cdd:COG3096 370 VEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQtraiqyqQAVQA-LEKARALCGLPDLTPENAEDYLAAFRA 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 779 ELQSTDQlkeyiSLLEaqLENHLQTASSERQNYTKEVEGLRQLLSE---------SQEQLEAAKtETQKQSKELALVRQQ 849
Cdd:COG3096 449 KEQQATE-----EVLE--LEQKLSVADAARRQFEKAYELVCKIAGEversqawqtARELLRRYR-SQQALAQRLQQLRAQ 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 850 LSEMKSHVQDGEVAGSQADlgdptpfELKMQLEQN-------EALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRlA 922
Cdd:COG3096 521 LAELEQRLRQQQNAERLLE-------EFCQRIGQQldaaeelEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLR-A 592
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2099354985 923 ENAAASDMEEAQH-LKERLEKekkLTRDLGQAATKLQELLKVTQDQLAKEREtVKKLKEQLHEKGEE 988
Cdd:COG3096 593 RIKELAARAPAWLaAQDALER---LREQSGEALADSQEVTAAMQQLLERERE-ATVERDELAARKQA 655
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
253-473 |
7.67e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 253 SEGEAQQLIEILTERAGIVQDTWHTATQKGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASES 332
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 333 KLKEQLVTREREITAVQARM---QASYQDHVNETQQLQGKIRALQEQLEngpntQLARLQQENSILRDALNQATSQtesk 409
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALllsPEDFLDAVRRLQYLKYLAPARREQAE-----ELRADLAELAALRAELEAERAE---- 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2099354985 410 QNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQKR 473
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
409-994 |
1.11e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 409 KQNAELAKLRQECNKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREmEATLQKRLDEVSDELRKTQTSY 488
Cdd:TIGR00618 198 LLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEE-QLKKQQLLKQLRARIEELRAQE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 489 RSLVADAEKAKGQQQS--IAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDR 566
Cdd:TIGR00618 277 AVLEETQERINRARKAapLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIH 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 567 DLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAA---TKAK 643
Cdd:TIGR00618 357 IRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAkkqQELQ 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 644 EELAHQLDVLQTRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAE------------- 710
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplcgscihpnpa 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 711 -------EAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQST 783
Cdd:TIGR00618 517 rqdidnpGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 784 DQLKEYISLLEAQL--ENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTET------QKQSKELALVRQQLSEMKS 855
Cdd:TIGR00618 597 QDLTEKLSEAEDMLacEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALqltltqERVREHALSIRVLPKELLA 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 856 HVQDGEVAgSQADLGDPTPFelKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDMEEA-- 933
Cdd:TIGR00618 677 SRQLALQK-MQSEKEQLTYW--KEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQar 753
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2099354985 934 ---QHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEEDSSKEG 994
Cdd:TIGR00618 754 tvlKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDED 817
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
545-988 |
1.15e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 545 ERIKSIEALLEAgrmreAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNwKAVEA 624
Cdd:PRK03918 176 RRIERLEKFIKR-----TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE-KELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 625 LTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKEtllsaLPEVTVSQQDYEAwLQEFKEKAVNVLKQHTVMTEPVDSal 704
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-----LKELKEKAEEYIK-LSEFYEEYLDELREIEKRLSRLEE-- 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 705 klkEAEEAQSTLQaECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTD 784
Cdd:PRK03918 322 ---EINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 785 QLKEyislleaQLENHLQTASSERQNYTKEVEGLRQLLSEsqeqLEAAKTETQKQSKELA------LVRQQLSEMKSHVQ 858
Cdd:PRK03918 398 KAKE-------EIEEEISKITARIGELKKEIKELKKAIEE----LKKAKGKCPVCGRELTeehrkeLLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 859 DGEVAGSQADlgdptpfELKMQLEQNEALMEKEQELR--QKLTRELEEAQSsacslqaELEKLRLAENAAASdmEEAQHL 936
Cdd:PRK03918 467 ELKEIEEKER-------KLRKELRELEKVLKKESELIklKELAEQLKELEE-------KLKKYNLEELEKKA--EEYEKL 530
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 2099354985 937 KERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEKGEE 988
Cdd:PRK03918 531 KEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
288-985 |
1.53e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 288 LKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASyqdhvNETQQLQ 367
Cdd:TIGR00618 192 LHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQ-----QLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 368 GKIRALQEQLENGPNTQLARLQQENSILRDALNQATSQTESKQNAELAKLRQECNKLMKELSEKSEVLQQEEqqkkswEI 447
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQS------SI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 448 KAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELD 527
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFR 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 528 SLKGKLQEASSENTRLLERIKSIEAlleagrmrEAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLER-----------E 596
Cdd:TIGR00618 421 DLQGQLAHAKKQQELQQRYAELCAA--------AITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQihlqetrkkavV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 597 AAELREAMEQQKTKNNDLREKNWKAV-----EALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKEtllsalpevtvs 671
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIHPNPARQdidnpGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRAS------------ 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 672 qqdYEAWLQEFKEKAVNVLKQHTVMTEPVDSAlkLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAK 751
Cdd:TIGR00618 561 ---LKEQMQEIQQSFSILTQCDNRSKEDIPNL--QNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 752 LTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEyisLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEA 831
Cdd:TIGR00618 636 QCSQELALKLTALHALQLTLTQERVREHALSIRVLPK---ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETH 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 832 AKtetqKQSKELALVRQQLSEMKSHVQDGEVAgsqadlgdptpfelkmqleQNEALMEKEQELRQKLTRELEEAQSSACS 911
Cdd:TIGR00618 713 IE----EYDREFNEIENASSSLGSDLAAREDA-------------------LNQSLKELMHQARTVLKARTEAHFNNNEE 769
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2099354985 912 LQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHEK 985
Cdd:TIGR00618 770 VTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSAT 843
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
727-990 |
1.63e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 45.66 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 727 LAETEGMLRDLQKSVEEEEQvwkAKLTVSEE------ELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLEN- 799
Cdd:PLN02939 130 LEDLVGMIQNAEKNILLLNQ---ARLQALEDlekiltEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKl 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 800 ------HLQTASSERQNYTKEVEGLRQ---LLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQDGE--VAGSQAD 868
Cdd:PLN02939 207 rnelliRGATEGLCVHSLSKELDVLKEenmLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELEskFIVAQED 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 869 LgdptpfeLKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAElEKLRLAENAAASDMEEAQHLKERLEKEKKLTR 948
Cdd:PLN02939 287 V-------SKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQN-QDLRDKVDKLEASLKEANVSKFSSYKVELLQQ 358
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 2099354985 949 DLGQAATKLQ-------ELLKVTQDQLAKERETVKKLKEQLHEKGEEDS 990
Cdd:PLN02939 359 KLKLLEERLQasdheihSYIQLYQESIKEFQDTLSKLKEESKKRSLEHP 407
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
281-853 |
1.73e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 281 KGDPVAVLKRQLEEKEKQLTAEQEDAAAARNKL-RELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDH 359
Cdd:TIGR00618 291 KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRaKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREI 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 360 VNETQQLQGKIRALQEQLE-----------------NGPNTQLARLQQENSILRDALNQATSQTESKQNAELAKLRQEC- 421
Cdd:TIGR00618 371 SCQQHTLTQHIHTLQQQKTtltqklqslckeldilqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCt 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 422 -----------NKLMKELSEKSEVLQQEEQQKKSWEIKAAASEKQIEQLQTSQREMEATLQkrldevsdELRKTQTSYRS 490
Cdd:TIGR00618 451 aqceklekihlQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCI--------HPNPARQDIDN 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 491 LVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIKSIEALLEaGRMREAEEDRDLQA 570
Cdd:TIGR00618 523 PGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIP-NLQNITVRLQDLTE 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 571 ANEAEMKQLQLRLQEktdQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQl 650
Cdd:TIGR00618 602 KLSEAEDMLACEQHA---LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLAS- 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 651 dvlqtrtketLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMTEpvdSALKLKEAEEAQSTLQAECEQYRAILAET 730
Cdd:TIGR00618 678 ----------RQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE---YDREFNEIENASSSLGSDLAAREDALNQS 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 731 EGMLRDLQKSV----EEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLK----EYISLLEAQLENHLQ 802
Cdd:TIGR00618 745 LKELMHQARTVlkarTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEaeigQEIPSDEDILNLQCE 824
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 2099354985 803 TASSERQNYTKEVEGLRQLLSESQEQLEAAKtETQKQSKELALVRQQLSEM 853
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEKSATLGEITHQLLKYE-ECSKQLAQLTQEQAKIIQL 874
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
567-782 |
2.14e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 567 DLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKnwkaVEALTTVEKACEEKLLAATKAKEEL 646
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 647 AHQLDVLQTRTKETLLSAlpeVTVSQQDYEAWL---QEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQY 723
Cdd:COG4942 96 RAELEAQKEELAELLRAL---YRLGRQPPLALLlspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 2099354985 724 RAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQS 782
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
343-625 |
2.59e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 343 REITAVQARMQASYQDHVNETQQLQGKIRALQEQLEngpntQLARLQQENSILRDA-----LNQATSQTESKQNAElAKL 417
Cdd:COG3096 839 AALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQ-----LLNKLLPQANLLADEtladrLEELREELDAAQEAQ-AFI 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 418 RQECNKLmKELSEKSEVLQQEEQQKKswEIKAAASEKQIEQLQTSQR---------------------------EMEATL 470
Cdd:COG3096 913 QQHGKAL-AQLEPLVAVLQSDPEQFE--QLQADYLQAKEQQRRLKQQifalsevvqrrphfsyedavgllgensDLNEKL 989
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 471 QKRLDEVSDELRKTQtsyrslvadaEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQE-----ASSENTRLLE 545
Cdd:COG3096 990 RARLEQAEEARREAR----------EQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElgvqaDAEAEERARI 1059
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 546 RIKSIEALLEAGRMREAEEDRDLQaANEAEMKQLQLRLQEktdqllsLEREAAELREAMEQQKtknndlreKNWKAVEAL 625
Cdd:COG3096 1060 RRDELHEELSQNRSRRSQLEKQLT-RCEAEMDSLQKRLRK-------AERDYKQEREQVVQAK--------AGWCAVLRL 1123
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
820-947 |
3.08e-04 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 42.03 E-value: 3.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 820 QLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQDGEVAGS-QADLGDPTPFELKMQLEQNEALMEKEQEL-RQK 897
Cdd:pfam05104 8 EALAKQRRELKKTPTEKEKKKKEKKKEKKKKSKKKEEKPNGKLPESeQADESEEEPREFKTPDEAPSAALEPEPVPtPVP 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2099354985 898 LTRELEEAQ---SSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLT 947
Cdd:pfam05104 88 APVEPEPAPpseSPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
679-946 |
3.47e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 679 LQEFKEKAVNVLKQHTVMtEPVD-----SALKLKEAEEAQSTLQAECEQYRAILaETEGMLRDLQKSVEEEEqvWKAKLT 753
Cdd:PRK05771 14 LKSYKDEVLEALHELGVV-HIEDlkeelSNERLRKLRSLLTKLSEALDKLRSYL-PKLNPLREEKKKVSVKS--LEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 754 VSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLK---EYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESqEQLE 830
Cdd:PRK05771 90 DVEEELEKIEKEIKELEEEISELENEIKELEQEIerlEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLES-DVEN 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 831 AAKTETQKQSKELALVrqqlsemkSHVQDGEVAGSQADLGDPTPFELKMQLEQNEALMEKEQELRQkLTRELEEAQSSAC 910
Cdd:PRK05771 169 VEYISTDKGYVYVVVV--------VLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEE-IEKERESLLEELK 239
|
250 260 270
....*....|....*....|....*....|....*.
gi 2099354985 911 SLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKL 946
Cdd:PRK05771 240 ELAKKYLEELLALYEYLEIELERAEALSKFLKTDKT 275
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
396-606 |
4.83e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 396 RDALNQATSQTESKQNAELAKLRQECNKLMKELS---EKSEVLQQEEQQKksweikaaASEKQIEQLQTSQREMEATL-- 470
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEefrQKNGLVDLSEEAK--------LLLQQLSELESQLAEARAELae 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 471 -QKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQsIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSENTRLLERIK- 548
Cdd:COG3206 238 aEARLAALRAQLGSGPDALPELLQSPVIQQLRAQ-LAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILa 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2099354985 549 SIEALLEAGRMREAEedrdlQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQ 606
Cdd:COG3206 317 SLEAELEALQAREAS-----LQAQLAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
290-949 |
5.74e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 5.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 290 RQLEEKEKQLTAEQEDAAAARNKLRELSK---ELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHVNETQQl 366
Cdd:TIGR00606 312 RTVREKERELVDCQRELEKLNKERRLLNQektELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSER- 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 367 qgkiralqeQLENGPNTQLARLQQENSILRDALNQATSQTESKQNAeLAKLRQECNKLMKELSEKSEVLQQEEQQKKSwe 446
Cdd:TIGR00606 391 ---------QIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQ-ADEIRDEKKGLGRTIELKKEILEKKQEELKF-- 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 447 ikaaaSEKQIEQLQTSQremeatlqKRLDEVSDELRKTQTSYRSLVADA--EKAKGQQQSIAELQAKLLSSETEVKSKLL 524
Cdd:TIGR00606 459 -----VIKELQQLEGSS--------DRILELDQELRKAERELSKAEKNSltETLKKEVKSLQNEKADLDRKLRKLDQEME 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 525 ELDSLKGKLQEASS---ENTRLLERIKSI------EALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLER 595
Cdd:TIGR00606 526 QLNHHTTTRTQMEMltkDKMDKDEQIRKIksrhsdELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQ 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 596 EAAELREAMEQQKTKNNDLREKNWKAV--EALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQ 673
Cdd:TIGR00606 606 NKNHINNELESKEEQLSSYEDKLFDVCgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQR 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 674 DY--EAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEAEEAQSTLQAECEQYRAILAETE-GMLRDLQKSVEEEEQVWKA 750
Cdd:TIGR00606 686 VFqtEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEiPELRNKLQKVNRDIQRLKN 765
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 751 KLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEyISLLEAQLENHLQTASSER--QNYTKEVEGLRQLLSESQEQ 828
Cdd:TIGR00606 766 DIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKD-VERKIAQQAAKLQGSDLDRtvQQVNQEKQEKQHELDTVVSK 844
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 829 LEAAKTETQKQSKELALVRQQLSEMKSHvqdgevagsqadlgdptpfelKMQLEQNealMEKEQELRQKLTRELEEAQSS 908
Cdd:TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSE---------------------KLQIGTN---LQRRQQFEEQLVELSTEVQSL 900
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 2099354985 909 ACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRD 949
Cdd:TIGR00606 901 IREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQD 941
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
291-515 |
1.27e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 291 QLEEKEKQLTAEQEDAAAARNKLRELSKELaaekakaaaseSKLKEQL--VTREREITAVQARMQASYQDHVNETQQLQ- 367
Cdd:PRK11281 74 KIDRQKEETEQLKQQLAQAPAKLRQAQAEL-----------EALKDDNdeETRETLSTLSLRQLESRLAQTLDQLQNAQn 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 368 ------GKIRALQEQLENGPN---TQLARLQQENSILRD-ALNQATSQTESKQ--NAELAKL-------RQEC------- 421
Cdd:PRK11281 143 dlaeynSQLVSLQTQPERAQAalyANSQRLQQIRNLLKGgKVGGKALRPSQRVllQAEQALLnaqndlqRKSLegntqlq 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 422 ---NKLMKELSEKSEVLQQEEQ--QKKSWEIKAAASEKQIEQLQTSQREMEAT----LQKRLD---EVSDELRKTQTSYR 489
Cdd:PRK11281 223 dllQKQRDYLTARIQRLEHQLQllQEAINSKRLTLSEKTVQEAQSQDEAARIQanplVAQELEinlQLSQRLLKATEKLN 302
|
250 260 270
....*....|....*....|....*....|....*..
gi 2099354985 490 SLVADAEKAKGQ----QQS-------IAELQAKLLSS 515
Cdd:PRK11281 303 TLTQQNLRVKNWldrlTQSernikeqISVLKGSLLLS 339
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
562-919 |
1.55e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 562 AEEDRDLQAANE------AEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEK 635
Cdd:TIGR02169 166 AEFDRKKEKALEeleeveENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 636 LLAATKAKEELAHQLDVLQTRtketllsalpevtvsqqdYEAWLQEFKEKAVNVLKqhtvMTEPVDSALKLKEAEeaqst 715
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKR------------------LEEIEQLLEELNKKIKD----LGEEEQLRVKEKIGE----- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 716 LQAECEQYRAILAETEGMLRDLQKSV---EEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQLKEyisl 792
Cdd:TIGR02169 299 LEAEIASLERSIAEKERELEDAEERLaklEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE---- 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 793 leaQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLSEMKSHVQdgEVAGSQADLGDP 872
Cdd:TIGR02169 375 ---EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN--ELEEEKEDKALE 449
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 2099354985 873 TPfELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKL 919
Cdd:TIGR02169 450 IK-KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
702-952 |
1.62e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 702 SALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQvwkaKLTVSEEELQKSQLQLKSLEDMIEKLKAELQ 781
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALER----RIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 782 stdQLKEYISLLEAQLENHLQTA-SSERQNYTK---------EVEGLRQLLSESQEQLEAAKTETQKQSKELALVRQQLS 851
Cdd:COG4942 94 ---ELRAELEAQKEELAELLRALyRLGRQPPLAlllspedflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 852 EMKSHVQdgevagsqadlgdptpfELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAAASDME 931
Cdd:COG4942 171 AERAELE-----------------ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250 260
....*....|....*....|.
gi 2099354985 932 EAQHLKERLEKEKKLTRDLGQ 952
Cdd:COG4942 234 AEAAAAAERTPAAGFAALKGK 254
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
288-988 |
1.78e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 288 LKRQLEEKEKQLTAEQEDAAAARNKLRELSKELaaekakaaASESKLKEQLVTREREITAVQARMQasyqdhvnETQQLQ 367
Cdd:TIGR00606 222 IRDQITSKEAQLESSREIVKSYENELDPLKNRL--------KEIEHNLSKIMKLDNEIKALKSRKK--------QMEKDN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 368 GKIRALQEQLENGPNTQLARLQQensilrdaLNQATSQTESKQNAELAKLRQECNKLMKELS-EKSEVLQQEEQQKKSWE 446
Cdd:TIGR00606 286 SELELKMEKVFQGTDEQLNDLYH--------NHQRTVREKERELVDCQRELEKLNKERRLLNqEKTELLVEQGRLQLQAD 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 447 IKAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSYRslvadaEKAKGQQQSIAELQAKLLSSETEVKSKLLEL 526
Cdd:TIGR00606 358 RHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVI------ERQEDEAKTAAQLCADLQSKERLKQEQADEI 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 527 -DSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAELREAME 605
Cdd:TIGR00606 432 rDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 606 QQKTKNNDLREKNwkaveALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKETLLSALPEVTVSQQdYEAWLQEfKEK 685
Cdd:TIGR00606 512 DLDRKLRKLDQEM-----EQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQ-LEDWLHS-KSK 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 686 AVNVLKQHTvmtepVDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVSEEELQKSQLQ 765
Cdd:TIGR00606 585 EINQTRDRL-----AKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 766 LKS--LEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSKEL 843
Cdd:TIGR00606 660 GATavYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 844 ALVRQQLSEMKSHVQ--DGEVAGSQADLGD-PTPFELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELE--K 918
Cdd:TIGR00606 740 DLKEKEIPELRNKLQkvNRDIQRLKNDIEEqETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQgsD 819
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2099354985 919 LRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETV-------KKLKEQLHEKGEE 988
Cdd:TIGR00606 820 LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIgtnlqrrQQFEEQLVELSTE 896
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
284-761 |
1.99e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 284 PVAVLKRQLEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARMQASYQDHVNET 363
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 364 QQLQGKIRALQEQLENGPnTQLARLQQEnsiLRDALNQATSQTESKQNAeLAKLRQECNKLMKELSEKSEVLQQEEQQKK 443
Cdd:COG4913 362 ARLEALLAALGLPLPASA-EEFAALRAE---AAALLEALEEELEALEEA-LAEAEAALRDLRRELRELEAEIASLERRKS 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 444 SW---------EIKAAASEKQIE--------QLQTSQRE----MEATL----------QKRLDEVSDELRKTQTSYRsLV 492
Cdd:COG4913 437 NIparllalrdALAEALGLDEAElpfvgeliEVRPEEERwrgaIERVLggfaltllvpPEHYAAALRWVNRLHLRGR-LV 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 493 ADAEKAKGQQQSIAELQAKLLSSETEVKSKLLElDSLKGKLQEASS----ENTRLLER----------IKSIEALLEAGR 558
Cdd:COG4913 516 YERVRTGLPDPERPRLDPDSLAGKLDFKPHPFR-AWLEAELGRRFDyvcvDSPEELRRhpraitragqVKGNGTRHEKDD 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 559 MREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSLEREAAEL---REAMEQQKTKNNDLREKNWKAVEALTTVEKACE-- 633
Cdd:COG4913 595 RRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALeaeLDALQERREALQRLAEYSWDEIDVASAEREIAEle 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 634 ---EKLLAATKAKEELAHQLDVLQTRTKETllsalpevtvsqqdyEAWLQEFKEKAVNVLKQHTVMTEPVDSALKLKEA- 709
Cdd:COG4913 675 aelERLDASSDDLAALEEQLEELEAELEEL---------------EEELDELKGEIGRLEKELEQAEEELDELQDRLEAa 739
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 2099354985 710 -EEAQSTLQAECEQYRAILAETEgMLRDLQKSVEEEEQVWKAKLTVSEEELQK 761
Cdd:COG4913 740 eDLARLELRALLEERFAAALGDA-VERELRENLEERIDALRARLNRAEEELER 791
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
391-611 |
2.06e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 42.13 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 391 ENSILRDALNQATSQTESKQNAELAKLRQECNKlmkelseksEVLQQEEQQkksweikaaasekQIEQLQTSQREMEATL 470
Cdd:NF012221 1539 ESSQQADAVSKHAKQDDAAQNALADKERAEADR---------QRLEQEKQQ-------------QLAAISGSQSQLESTD 1596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 471 QKRLD---------------EVSDELRKTQTSYRSLVADAEKA--KGQQQSiAELQAKLLSSeteVKSKLLELDSLKGK- 532
Cdd:NF012221 1597 QNALEtngqaqrdaileesrAVTKELTTLAQGLDALDSQATYAgeSGDQWR-NPFAGGLLDR---VQEQLDDAKKISGKq 1672
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 533 LQEASSENTRLLERIKSIEALLEAGRMR------EAEEDRDlQAANEAEMKQLQLRLQEKTDQLL----SLEREAAELRE 602
Cdd:NF012221 1673 LADAKQRHVDNQQKVKDAVAKSEAGVAQgeqnqaNAEQDID-DAKADAEKRKDDALAKQNEAQQAesdaNAAANDAQSRG 1751
|
....*....
gi 2099354985 603 AMEQQKTKN 611
Cdd:NF012221 1752 EQDASAAEN 1760
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
113-310 |
2.26e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 41.79 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 113 ESPIAAVSVPPQEKEKPALSPKEKRKKEKKVAKVEPAPSPALASPPASVPKG----SPVLEVTPKEVPVVAVPPVGTQQS 188
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAparrSPAPEALAAARQASARGPGGAPAP 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 189 APVVSSVPIKKPEALPTHEEQKHDGPVKKKSASKKKAEPAPADSDGPlylPYKTLVSTISSMAFSEGEA--QQLIEILTE 266
Cdd:PRK12323 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP---PWEELPPEFASPAPAQPDAapAGWVAESIP 527
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2099354985 267 RAGIVQDTWHTATQKGDPVA-VLKRQLEEKEKQLTAEQEDAAAAR 310
Cdd:PRK12323 528 DPATADPDDAFETLAPAPAAaPAPRAAAATEPVVAPRPPRASASG 572
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
415-984 |
2.40e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 415 AKLRQECNKLMK-ELSEKSEVLQQEEQQKKSWEIkAAASEKQIEQLQTSQREMEATLQKRLDEVSDELRKTQTSY----- 488
Cdd:pfam05483 81 SKLYKEAEKIKKwKVSIEAELKQKENKLQENRKI-IEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRhlcnl 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 489 --RSLVADAEKAKGQQQSIAELQAKLLSSETEVKSKLLELDSLKGKLQEASSE-NTRLLERIKSIEALLEAGRMREAEED 565
Cdd:pfam05483 160 lkETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEmHFKLKEDHEKIQHLEEEYKKEINDKE 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 566 RDLQ------AANEAEMKQLQLRLQEKTDQLLSLER----EAAELREAMEQQKTKNNDLREKNWKAVEALTTvEKACEEK 635
Cdd:pfam05483 240 KQVSllliqiTEKENKMKDLTFLLEESRDKANQLEEktklQDENLKELIEKKDHLTKELEDIKMSLQRSMST-QKALEED 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 636 LLAATKAKEELAHQLDVLQ---TRTKETLLSALPEVTVSQQDYEAWLQEFKEKAVNVLKQHTVMT-EPVDSALKLKEAEE 711
Cdd:pfam05483 319 LQIATKTICQLTEEKEAQMeelNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITmELQKKSSELEEMTK 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 712 AQSTLQAECEQYRAILAETEGML---RDLQKSVEE---EEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLKAELQSTDQ 785
Cdd:pfam05483 399 FKNNKEVELEELKKILAEDEKLLdekKQFEKIAEElkgKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKT 478
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 786 LKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKTETQKQSK--------------ELALVRQQLs 851
Cdd:pfam05483 479 ELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKqienleekemnlrdELESVREEF- 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 852 emkshVQDGEVAGSQADLGDPTPFELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAELEKLRLAENAaasdme 931
Cdd:pfam05483 558 -----IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSA------ 626
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 2099354985 932 EAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKERETVKKLKEQLHE 984
Cdd:pfam05483 627 ENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEK 679
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
284-620 |
2.69e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 41.76 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 284 PVAVLKRQLEE-KEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESK---LKEQLVTREREITavqarmQASYQDH 359
Cdd:PLN03229 430 PVRELEGEVEKlKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIamgLQERLENLREEFS------KANSQDQ 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 360 VNEtQQLQGKIRALQEQ----LENGPNtqLARLQQENSILRDAlNQATSQTESKQNAElaKLRQECNKLMKE------LS 429
Cdd:PLN03229 504 LMH-PVLMEKIEKLKDEfnkrLSRAPN--YLSLKYKLDMLNEF-SRAKALSEKKSKAE--KLKAEINKKFKEvmdrpeIK 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 430 EKSEVLQQEEQQKKSWEIkAAASEKQIEQLQTSQREMEATLQKRLDEVSDELrktqtsyrSLVADAEKAKGQQQSIAELQ 509
Cdd:PLN03229 578 EKMEALKAEVASSGASSG-DELDDDLKEKVEKMKKEIELELAGVLKSMGLEV--------IGVTKKNKDTAEQTPPPNLQ 648
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 510 AKLLSSETEVKSKLLEL---DSLKGKLQEASSE-----NTRLLERIKSIEALleagrmrEAEEDRDLQAANEAEmkqlql 581
Cdd:PLN03229 649 EKIESLNEEINKKIERVirsSDLKSKIELLKLEvakasKTPDVTEKEKIEAL-------EQQIKQKIAEALNSS------ 715
|
330 340 350
....*....|....*....|....*....|....*....
gi 2099354985 582 RLQEKTDQLLSLEREAAELREAmEQQKTKNNDLREKNWK 620
Cdd:PLN03229 716 ELKEKFEELEAELAAARETAAE-SNGSLKNDDDKEEDSK 753
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
466-684 |
3.74e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 466 MEATLQKRLDEVSDELRKTQTSYRSLVADAEKA-KGQQQSIAELQAK--LLSSETEVKSKLLELDSLKGKLQEASSENTR 542
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEEQLPELRKElEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 543 LLERIKSIEALLEAGRMREAEEDRDLQAAN--------EAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKTknndl 614
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVIQQlraqlaelEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQ----- 312
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 615 reknwKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRTKEtLLSALPEVTVSQQDYEAWLQEFKE 684
Cdd:COG3206 313 -----RILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE-LRRLEREVEVARELYESLLQRLEE 376
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
406-843 |
3.74e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.58 E-value: 3.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 406 TESKQNAELAKLRQECNKLMKELSEKSEV------LQQE--EQQKKSWEIKAAASE----------KQIEQLQTSQREME 467
Cdd:TIGR01612 1292 ISKKHDENISDIREKSLKIIEDFSEESDIndikkeLQKNllDAQKHNSDINLYLNEianiynilklNKIKKIIDEVKEYT 1371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 468 ATLQKRLDEVSDELRKTQTSYRSL---------------VADAEKAKGQQQSIAELQAKLLSSETEVKSKLleldslkgk 532
Cdd:TIGR01612 1372 KEIEENNKNIKDELDKSEKLIKKIkddinleeckskiesTLDDKDIDECIKKIKELKNHILSEESNIDTYF--------- 1442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 533 lQEASSENTRLLERIKSIEAlleagrmreaeedrdlqaaneAEMKQLQLRLQEKTDQLLSLEREAAELREAMEQQKtKNN 612
Cdd:TIGR01612 1443 -KNADENNENVLLLFKNIEM---------------------ADNKSQHILKIKKDNATNDHDFNINELKEHIDKSK-GCK 1499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 613 DLREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQTRT-KETLLSALPEVTvSQQDYEAwlqEFKEKAVNVLK 691
Cdd:TIGR01612 1500 DEADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKNKFAKTKKdSEIIIKEIKDAH-KKFILEA---EKSEQKIKEIK 1575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 692 QHTVMTEpvDSALKLKEAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEEQVWKAKLTVS----EEELQKSQLQLK 767
Cdd:TIGR01612 1576 KEKFRIE--DDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISSFSidsqDTELKENGDNLN 1653
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2099354985 768 SLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNY-TKEVEGLRQLLSESQEQLEAAKTETQKQSKEL 843
Cdd:TIGR01612 1654 SLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYeIGIIEKIKEIAIANKEEIESIKELIEPTIENL 1730
|
|
| Rootletin |
pfam15035 |
Ciliary rootlet component, centrosome cohesion; |
705-858 |
5.20e-03 |
|
Ciliary rootlet component, centrosome cohesion;
Pssm-ID: 464459 [Multi-domain] Cd Length: 190 Bit Score: 39.25 E-value: 5.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 705 KLKEAEEAQ-------STLQAECEQYRAILAETEGMLRDLqKSVEEEEQVWKAKLTVSEEELQKSQLQLKSLEDMIEKLK 777
Cdd:pfam15035 3 KLQAYQEAQqrqaqlvQKLQAKVLQYKKRCSELEQQLLEK-TSELEKTELLLRKLTLEPRLQRLEREHSADLEEALIRLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 778 AELQSTDQLKEYISLLEAQLENHLQT---ASSERQNYTKEVEGLRQLL----SESQEQLEAAKTE-TQKQSKELAL---- 845
Cdd:pfam15035 82 EERQRSESLSQVNSLLREQLEQASRAneaLREDLQKLTNDWERAREELeqkeSEWRKEEEAFNEYlSSEHSRLLSLwrev 161
|
170
....*....|....*
gi 2099354985 846 --VRQQLSEMKSHVQ 858
Cdd:pfam15035 162 vaVRRQFTELKTATE 176
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
292-971 |
6.72e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 292 LEEKEKQLTAEQEDAAAARNKLRELSKELAAEKAKAAASESKLKEQLVTREREITAVQARM---QASYQDHVNETQQLQG 368
Cdd:pfam01576 192 LEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLeeeTAQKNNALKKIRELEA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 369 KIRALQEQLE------NGPNTQLARLQQENSILRDALNQATSQTESKQNAElAKLRQECNKLMKELSEKSEVLQQEEQQK 442
Cdd:pfam01576 272 QISELQEDLEseraarNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELR-SKREQEVTELKKALEEETRSHEAQLQEM 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 443 KSWEIKAAAS-EKQIEQLQTSQREME---ATLQKRLDEVSDELRKTQTSYRSLVADAEKAKGQQQsiaELQAKLLSSE-- 516
Cdd:pfam01576 351 RQKHTQALEElTEQLEQAKRNKANLEkakQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQ---ELQARLSESErq 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 517 -TEVKSKL----LELDSLKGKLQEASSENTRLLERIKSIEALLEAGRMREAEEDRDLQA------ANEAEMKQLQLRLQE 585
Cdd:pfam01576 428 rAELAEKLsklqSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNlstrlrQLEDERNSLQEQLEE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 586 KTDQLLSLEREAAELREAMEQQKTKnndlREKNWKAVEALTTVEKACEEKLLAATKAKEELAHQLDVLQtRTKETLLSAL 665
Cdd:pfam01576 508 EEEAKRNVERQLSTLQAQLSDMKKK----LEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLE-KTKNRLQQEL 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 666 PEVTVSQQDYEAWLQEFKEKavnvlkqhtvmTEPVDSALklkeAEEAQSTLQAECEQYRAILAETEGMLRDLQKSVEEEE 745
Cdd:pfam01576 583 DDLLVDLDHQRQLVSNLEKK-----------QKKFDQML----AEEKAISARYAEERDRAEAEAREKETRALSLARALEE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 746 qvwkakLTVSEEELQKSQLQLKS-LEDMIEKLKAELQSTDQLKEYISLLEAQLENhLQTASSERQNYTKEVEGLRQLLS- 823
Cdd:pfam01576 648 ------ALEAKEELERTNKQLRAeMEDLVSSKDDVGKNVHELERSKRALEQQVEE-MKTQLEELEDELQATEDAKLRLEv 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 824 -----ESQEQLEAAKTETQKQSKELALVRQqLSEMKSHVQDGEVAGSQADLGDPtpfELKMQLEQNEALMEKEQELRQKL 898
Cdd:pfam01576 721 nmqalKAQFERDLQARDEQGEEKRRQLVKQ-VRELEAELEDERKQRAQAVAAKK---KLELDLKELEAQIDAANKGREEA 796
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2099354985 899 TRELEEAQSSACSLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQAATKLQELLKVTQDQLAKE 971
Cdd:pfam01576 797 VKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADE 869
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
758-950 |
7.42e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.14 E-value: 7.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 758 ELQKSQLQLKSLEDMIEKLKAELQSTDQLKEYISLLEAQLENHLQTASSERQNYTKEVEGLRQLLSESQEQLEAAKT--E 835
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 836 TQKQSKELALVRQQLSEMKSHVqdgevagsqadlgdptpFELKMQLEQNEALMEKEQELRQKLTRELEEAQSSACSLQAE 915
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEI-----------------LELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE 153
|
170 180 190
....*....|....*....|....*....|....*
gi 2099354985 916 LEKlrlaenaaasdmEEAQHLKERLEKEKKLTRDL 950
Cdd:COG1579 154 LEA------------ELEELEAEREELAAKIPPEL 176
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
449-647 |
7.53e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 7.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 449 AAASEKQIEQLQTSQREMEA---TLQKRLDEVSDELRKTQTSYRSLVADAEKAkgqQQSIAELQAKLLSSETEVKSKLLE 525
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAeleAAQAELDALQAELEELNEEYNELQAELEAL---QAEIDKLQAEIAEAEAEIEERREE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 526 LDSLKGKLQEASSENTRL------------LERIKSIEALLEAGRmREAEEDRDLQAANEAEMKQLQLRLQEKTDQLLSL 593
Cdd:COG3883 88 LGERARALYRSGGSVSYLdvllgsesfsdfLDRLSALSKIADADA-DLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 2099354985 594 EREAAELREAMEQQKTKNNDLREKNWKAVEALTTVEKACEEKLLAATKAKEELA 647
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
879-985 |
7.86e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 7.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2099354985 879 MQLEQNEALMEKEQ-----ELRQKLTRELEEaqssacsLQAELEKLRLAENAAASDMEEAQHLKERLEKEKKLTRDLGQA 953
Cdd:COG0542 421 EQLEIEKEALKKEQdeasfERLAELRDELAE-------LEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 2099354985 954 ATKLQELLK---------VTQDQLAK----------------ERETVKKLKEQLHEK 985
Cdd:COG0542 494 LAELEEELAelapllreeVTEEDIAEvvsrwtgipvgkllegEREKLLNLEEELHER 550
|
|
| |
