NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|386763730|ref|NP_001245504|]
View 

tetraspanin 3A, isoform B [Drosophila melanogaster]

Protein Classification

tetraspanin( domain architecture ID 13626508)

tetraspanin is a transmembrane protein that acts as a molecular facilitator in diverse processes; similar to Homo sapiens tetraspanin-15 and tetraspanin-33

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
penumbra_like_LEL cd03158
Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. ...
 144-267 4.24e-66

Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.


:

Pssm-ID: 239411  Cd Length: 119  Bit Score: 202.53  E-value: 4.24e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 144 FVCPQYMNTFLEKQFTHKIIHsYRDDPDLQNFIDFAQQEFKCCGLSNsgYQDWSKNEYFNCSSPSVEKCGVPYSCCINAT 223
Cdd:cd03158    1 FIFSNQTIDLLEENIRKAIVH-YYDDLDLQNIIDFVQKEFKCCGGDD--YRDWSKNMYFNCSSPNPEACGVPYSCCIRAK 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 386763730 224 DisSGLVNIMCGYGVQNAPVPEATKLIWTSGCIEIVRVWAEHNL 267
Cdd:cd03158   78 D--QEVINTMCGYGVQNLERLEASKLIYTRGCIDAVVLWIEDNL 119
Tetraspanin pfam00335
Tetraspanin family;
43-187 6.49e-25

Tetraspanin family;


:

Pssm-ID: 459767  Cd Length: 183  Bit Score: 98.55  E-value: 6.49e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730   43 VKYMIFLLNFVFWLFGGLLLGIGVYAFrdkwedANGSVRLENFYDVFLNISLVMILAGTVIFLVSFSGCVGALRENTFLL 122
Cdd:pfam00335   1 LKYLLFLFNLLFWLLGLLLLGVGVWLL------SAFSLLLLGLSEASAYIPILLIVLGAVIFLVGFLGCCGALKENRCLL 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386763730  123 KFYSMCLLLFFLLEMAIAIVCFVCPQYMNTFLEKQFTHKIIHSYRDDPDL----QNFIDFAQQEFKCCG 187
Cdd:pfam00335  75 LTYFVLLLLLFLAELAAGILAFVYRDKLSGLLSNWLKKSLEDGYRDWLDLysclNSALDSLQSEFGCCG 143
 
Name Accession Description Interval E-value
penumbra_like_LEL cd03158
Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. ...
 144-267 4.24e-66

Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.


Pssm-ID: 239411  Cd Length: 119  Bit Score: 202.53  E-value: 4.24e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 144 FVCPQYMNTFLEKQFTHKIIHsYRDDPDLQNFIDFAQQEFKCCGLSNsgYQDWSKNEYFNCSSPSVEKCGVPYSCCINAT 223
Cdd:cd03158    1 FIFSNQTIDLLEENIRKAIVH-YYDDLDLQNIIDFVQKEFKCCGGDD--YRDWSKNMYFNCSSPNPEACGVPYSCCIRAK 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 386763730 224 DisSGLVNIMCGYGVQNAPVPEATKLIWTSGCIEIVRVWAEHNL 267
Cdd:cd03158   78 D--QEVINTMCGYGVQNLERLEASKLIYTRGCIDAVVLWIEDNL 119
Tetraspanin pfam00335
Tetraspanin family;
43-187 6.49e-25

Tetraspanin family;


Pssm-ID: 459767  Cd Length: 183  Bit Score: 98.55  E-value: 6.49e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730   43 VKYMIFLLNFVFWLFGGLLLGIGVYAFrdkwedANGSVRLENFYDVFLNISLVMILAGTVIFLVSFSGCVGALRENTFLL 122
Cdd:pfam00335   1 LKYLLFLFNLLFWLLGLLLLGVGVWLL------SAFSLLLLGLSEASAYIPILLIVLGAVIFLVGFLGCCGALKENRCLL 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386763730  123 KFYSMCLLLFFLLEMAIAIVCFVCPQYMNTFLEKQFTHKIIHSYRDDPDL----QNFIDFAQQEFKCCG 187
Cdd:pfam00335  75 LTYFVLLLLLFLAELAAGILAFVYRDKLSGLLSNWLKKSLEDGYRDWLDLysclNSALDSLQSEFGCCG 143
 
Name Accession Description Interval E-value
penumbra_like_LEL cd03158
Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. ...
 144-267 4.24e-66

Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.


Pssm-ID: 239411  Cd Length: 119  Bit Score: 202.53  E-value: 4.24e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 144 FVCPQYMNTFLEKQFTHKIIHsYRDDPDLQNFIDFAQQEFKCCGLSNsgYQDWSKNEYFNCSSPSVEKCGVPYSCCINAT 223
Cdd:cd03158    1 FIFSNQTIDLLEENIRKAIVH-YYDDLDLQNIIDFVQKEFKCCGGDD--YRDWSKNMYFNCSSPNPEACGVPYSCCIRAK 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 386763730 224 DisSGLVNIMCGYGVQNAPVPEATKLIWTSGCIEIVRVWAEHNL 267
Cdd:cd03158   78 D--QEVINTMCGYGVQNLERLEASKLIYTRGCIDAVVLWIEDNL 119
TM4SF9_like_LEL cd03159
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. ...
 163-267 6.49e-27

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.


Pssm-ID: 239412 [Multi-domain]  Cd Length: 121  Bit Score: 101.73  E-value: 6.49e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 163 IHSYRDDPDLQNFIDFAQQEFKCCGLsnSGYQDWSKNEYFNCS--SPSVEKCGVPYSCCINatDISSGLVNIMCGYGVQN 240
Cdd:cd03159   19 IRAYRDDIDLQNLIDFLQEYWQCCGA--RGPDDWNLNIYFNCTdsNPSRERCGVPFSCCVK--DPAEDVVNTQCGYDVRK 94

                         90       100
                 ....*....|....*....|....*..
gi 386763730 241 APVPEATKLIWTSGCIEIVRVWAEHNL 267
Cdd:cd03159   95 KPELELQHHIHTKGCVQAFEKWLQDNL 121
oculospanin_like_LEL cd03167
Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. ...
 162-267 1.07e-25

Tetraspanin, extracellular domain or large extracellular loop (LEL), oculospanin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contains sequences similar to oculospanin, which is found to be expressed in retinal pigment epithelium, iris, ciliary body, and retinal ganglion cells.


Pssm-ID: 239420  Cd Length: 120  Bit Score: 98.69  E-value: 1.07e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 162 IIHsYRDDPDLQNFIDFAQQEFKCCGLSNsgYQDWSKNEYFNCSSPSVEKCGVPYSCCINATDISSgLVNIMCGYGVQNA 241
Cdd:cd03167   19 IAH-YQDDPDLRFLIDQVQLGLQCCGASS--YQDWQQNLYFNCSSPGVQACSLPASCCIDPREDGA-VVNDQCGFGALGL 94

                         90       100
                 ....*....|....*....|....*.
gi 386763730 242 PVPEATKLIWTSGCIEIVRVWAEHNL 267
Cdd:cd03167   95 DEDAAQRVVHLGGCGPPLRRWLRGNL 120
Tetraspanin pfam00335
Tetraspanin family;
43-187 6.49e-25

Tetraspanin family;


Pssm-ID: 459767  Cd Length: 183  Bit Score: 98.55  E-value: 6.49e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730   43 VKYMIFLLNFVFWLFGGLLLGIGVYAFrdkwedANGSVRLENFYDVFLNISLVMILAGTVIFLVSFSGCVGALRENTFLL 122
Cdd:pfam00335   1 LKYLLFLFNLLFWLLGLLLLGVGVWLL------SAFSLLLLGLSEASAYIPILLIVLGAVIFLVGFLGCCGALKENRCLL 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 386763730  123 KFYSMCLLLFFLLEMAIAIVCFVCPQYMNTFLEKQFTHKIIHSYRDDPDL----QNFIDFAQQEFKCCG 187
Cdd:pfam00335  75 LTYFVLLLLLFLAELAAGILAFVYRDKLSGLLSNWLKKSLEDGYRDWLDLysclNSALDSLQSEFGCCG 143
tetraspanin_LEL cd03127
Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are ...
 144-267 1.41e-11

Tetraspanin, extracellular domain or large extracellular loop (LEL). Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. The tetraspanin family contains CD9, CD63, CD37, CD53, CD82, CD151, and CD81, amongst others. Tetraspanins are involved in diverse processes such as cell activation and proliferation, adhesion and motility, differentiation, cancer, and others. Their various functions may relate to their ability to act as molecular facilitators, grouping specific cell-surface proteins and affecting formation and stability of signaling complexes. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web", which may also include integrins.


Pssm-ID: 239401 [Multi-domain]  Cd Length: 90  Bit Score: 59.83  E-value: 1.41e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 144 FVCPQYMNTFLEKQFThKIIHSYRDDPDLQNFIDFAQQEFKCCGlsNSGYQDWSKNEyfncsspsvekCGVPYSCCINat 223
Cdd:cd03127    1 FVYRDQLESLVSDTLN-DAWDEYYVDDDFQEAMDALQSTFECCG--VNGPTDYLDLR-----------LLVPSSCCKG-- 64

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 386763730 224 dissglvnimcgygvqnaPVPEATKLIWTSGCIEIVRVWAEHNL 267
Cdd:cd03127   65 ------------------TDGNCGLNLYTEGCLEKLVDFLRSNL 90
CD63_LEL cd03166
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins ...
 151-267 6.73e-10

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.


Pssm-ID: 239419  Cd Length: 99  Bit Score: 55.17  E-value: 6.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 151 NTFLEKQFThKIIHSYRDDPDLQNFIDFAQQEFKCCGLSNsgYQDWsknEYFncssPSVEKCGVPYSCCINATdissglv 230
Cdd:cd03166    8 MSEFNDSFN-QMISNYNKTNDFRKILDRMQKDLKCCGANN--YTDW---ENI----PSLDTDSVPDSCCINVT------- 70

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 386763730 231 nIMCGygvQNAPvpeaTKLIWTSGCIEIVRVWAEHNL 267
Cdd:cd03166   71 -KGCG---INFD----EKVIHLEGCVTKIEGWLKKNI 99
NET-5_like_LEL cd03165
Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. ...
 164-267 8.79e-09

Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.


Pssm-ID: 239418 [Multi-domain]  Cd Length: 98  Bit Score: 51.98  E-value: 8.79e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 164 HSYRDDPDLQNFIDFAQQEFKCCGLSNsgYQDWskNEYFNCSSpsvekcgVPYSCCINatdISSGlvnimCGYgvqnapv 243
Cdd:cd03165   22 YGTRNNRGLTNAWDITQTEFRCCGVTN--YTDW--YEVLGENR-------VPDSCCQE---DSQD-----CGR------- 75

                         90       100
                 ....*....|....*....|....
gi 386763730 244 pEATKLIWTSGCIEIVRVWAEHNL 267
Cdd:cd03165   76 -NPTELWWKTGCYEKVQQWLVDNL 98
CD151_like_LEL cd03155
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. ...
 170-267 3.07e-08

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD151_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD151strongly associates with integrins, especially alpha3beta1, alpha6beta1, alpha7beta1, and alpha6beta4; it may play roles in cell-cell adhesion, cell migration, platelet aggregation, and angiogenesis. For example, CD151 is is involved in regulation of migration of neutrophils, endothelial cells, and various tumor cell lines; it associates specifically with laminin-binding integrins and strengthens alpha6beta1 integrin-mediated adhesion to laminin-1; CD151 also specifically attenuates adhesion-dependent activation of Ras and correspdonding downstream effects, and is involved in epithelial cell-cell adhesion as a modulator of PKC- and Cdc42-dependent actin cytoskeletal reorganization.


Pssm-ID: 239408 [Multi-domain]  Cd Length: 110  Bit Score: 50.81  E-value: 3.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 170 PDLQNFIDFAQQEFKCCGlSNsGYQDWSKNEYFNCSSPSVEKcgVPYSCCInatdisSGLVNIMCGYGVQNAPVPEATkl 249
Cdd:cd03155   29 EALTLTVDELQQEFKCCG-SN-NYTDWQDSEWINSNEANGRL--VPDSCCK------TVVDRCGCLRDHPSNIYKVEG-- 96

                         90
                 ....*....|....*...
gi 386763730 250 iwtsGCIEIVRVWAEHNL 267
Cdd:cd03155   97 ----GCIPKLEDFLYDHL 110
TM4SF3_like_LEL cd03154
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. ...
 147-218 3.19e-07

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.


Pssm-ID: 239407 [Multi-domain]  Cd Length: 100  Bit Score: 47.80  E-value: 3.19e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 386763730 147 PQYMNTFLEKqFTHKIIHSYRDDPDLQNFIDFAQQEFKCCGLSNsGYQDWSKNEYFNCSSPSVEKCGVPYSC 218
Cdd:cd03154    9 PKIENELKEK-NTKLLSLLGQNAKSVKKSLEKFQKELKCCGLVN-GADDWGNDIPASCNCTTTQSDCVVAYY 78
CD53_like_LEL cd03164
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. ...
 144-269 5.43e-07

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD53_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD53 is a tetraspanin of the lymphoid-myeloid lineage and has been implicated in apoptosis protection. It associates with integrin alpha4beta1. Some of the cellular responses modulated by CD53 may be mediated by JNK activation and/or via the AKT pathway.


Pssm-ID: 239417 [Multi-domain]  Cd Length: 86  Bit Score: 46.70  E-value: 5.43e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 144 FVCPQYMNTFLEKQFTHKIiHSYRDDPDLQNFIDFAQQEFKCCGLSNSgyQDWSKneyfncsspsvekcGVPYSCCINAT 223
Cdd:cd03164    1 FVYEKKLNNYVKEGLTDSL-EQYHKDNNTSEAWDMIQSNLQCCGINGT--TDWGS--------------GVPSSCCSSDT 63

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 386763730 224 DissglvnimcgygvqnapvpeatklIWTSGCIEIVRVWAEHN-LYV 269
Cdd:cd03164   64 E-------------------------YKVEGCYKKLKNWFESNfLYT 85
CD37_CD82_like_LEL cd03160
Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. ...
 160-267 2.65e-06

Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD37 is a leukocyte-specific protein, and its restricted expression pattern suggests a role in the immune system. A regulatory role in T-cell proliferation has been suggested. CD82 is a metastasis suppressor implicated in biological processes ranging from fusion, adhesion, and migration to apoptosis and alterations of cell morphology.


Pssm-ID: 239413  Cd Length: 117  Bit Score: 45.45  E-value: 2.65e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 160 HKIIHSYRDDPD---LQNFIDFAQQEFKCCGLsnSGYQDWSKN-EYFNCSSPSvekcgVPYSCCINATDISSGLVNI-MC 234
Cdd:cd03160   17 EKVIQNYGGNPEnktAEEAWDYVQFQLQCCGW--TGPQDWTDNsLIKNSSEPL-----YPCSCCNSSATADSPRPSKgFC 89

                         90       100       110
                 ....*....|....*....|....*....|....
gi 386763730 235 -GYGVQNAPVpeatkliWTSGCIEIVRVWAEHNL 267
Cdd:cd03160   90 eAPASLDWPV-------YQEGCMEKLQSWLNENL 116
peripherin_like_LEL cd03162
Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. ...
 166-219 2.39e-05

Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Peripherin, or RDS (retinal degradation slow) is a glycoprotein expressed in vertebrate photoreceptors, located at the rim of the disc membranes of the photoreceptor outer segments. RDS is thought to play a major role in folding and stacking of the discs. Mutations in RDS have been linked to hereditary retinal dystrophies, which typically exhibit a wide phenotypic spectrum.


Pssm-ID: 239415  Cd Length: 143  Bit Score: 43.58  E-value: 2.39e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 386763730 166 YRDDPD-----LQNFIDFAQQEFKCCGlsNSGYQDWSK-----NEYFNCSSPSVEKC------------GVPYSCC 219
Cdd:cd03162   22 YKDTDTpgrcfLKKTIDMLQIEFQCCG--NNGYRDWFEiqwisNRYLDFSSKEVKDRiksnvdgryltdGVPFSCC 95
TM4SF2_6_like_LEL cd03161
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. ...
 176-267 1.05e-04

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF2_6_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 2 (TM4SF2) or Tspan-7, transmembrane 4 superfamily 6 (TM4SF6) or Tspan-6, and related proteins. TM4SF2 has been identified as involved in some forms of X-linked mental retardation.


Pssm-ID: 239414  Cd Length: 104  Bit Score: 40.81  E-value: 1.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 176 IDFAQQEFKCCGLSNsgYQDWSKNEYFncsspsvEKCGVPYSCCINATDissglvnimCGYGVQNAPVPEATKlIWTSGC 255
Cdd:cd03161   32 VDTVQRTLHCCGVEN--YTDWLNSPYF-------LEKGIPLSCCKNRSD---------CSPQDLKNLTKAATK-VYQQGC 92

                         90
                 ....*....|..
gi 386763730 256 IEIVRVWAEHNL 267
Cdd:cd03161   93 FTLVTSFMEANM 104
uroplakin_I_like_LEL cd03156
Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. ...
 166-266 1.34e-04

Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are maturation facilitators. They trigger conformational changes in their single-transmembrane-domain binding partner proteins uroplakin II and IIIa, which in turn may lead to ER-exit, stabilization, and cell-surface expression.


Pssm-ID: 239409  Cd Length: 114  Bit Score: 40.59  E-value: 1.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 166 YRDDPDLQNFIDFAQQEFKCCGLsnSGYQDWSKNEYFNCSSPSvEKCGVPYSCCinatdISSGLVNImcgyGVQNAPVPE 245
Cdd:cd03156   25 NSTGDAITSTWNRVMIELKCCGV--NGPTDFVDSTSFFRQKNE-PNSPYPESCC-----KRNSNSQI----VDLDCPKLG 92

                         90       100
                 ....*....|....*....|.
gi 386763730 246 ATKLIWTSGCIEIVRVWAEHN 266
Cdd:cd03156   93 SPNSYNKKGCYEKLSNPIERY 113
TM4SF8_like_LEL cd03163
Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. ...
 176-259 1.22e-03

Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.


Pssm-ID: 239416  Cd Length: 105  Bit Score: 37.79  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386763730 176 IDFAQQEFKCCGLSNsgYQDWSKNEYFNcsspSVEKCGVPYSCCINATDISSGLVNimcgygvqnapvpeATKLIWTSGC 255
Cdd:cd03163   33 VDYLQRQLQCCGIHN--YTDWENTPWFK----ESKNNSVPLSCCKETFTSCTGSLT--------------QPKDLYQEGC 92


                 ....
gi 386763730 256 IEIV 259
Cdd:cd03163   93 EAKL 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH