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Conserved domains on  [gi|386767977|ref|NP_001246328|]
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boundary element-associated factor of 32kD, isoform C [Drosophila melanogaster]

Protein Classification

zf-BED and BESS domain-containing protein( domain architecture ID 10502560)

zf-BED and BESS domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
7-58 9.14e-15

BED zinc finger;


:

Pssm-ID: 427043  Cd Length: 44  Bit Score: 67.01  E-value: 9.14e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 386767977    7 SNVWQHYDINEECENFAICRYCGNNISRGGmasnlkgnNTTNLWTHLRHKHR 58
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSRGG--------GTSNLIRHLRRKHP 44
BESS pfam02944
BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 ...
 237-271 6.28e-10

BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 and Stonewall). The motif is 40 amino acid residues long and is composed of two predicted alpha helices. Based on the protein in which it is found and the presence of conserved positively charged residues it is predicted to be a DNA binding domain. This domain appears to be specific to drosophila.


:

Pssm-ID: 460758  Cd Length: 35  Bit Score: 53.16  E-value: 6.28e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 386767977  237 DDDYYFALSLVPAMRHLSLSRKMYVRSKIQDILFK 271
Cdd:pfam02944   1 DSDDLFLLSLLPTMKRLPPKQKLKFKIKILQLLQE 35
 
Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
7-58 9.14e-15

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 67.01  E-value: 9.14e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 386767977    7 SNVWQHYDINEECENFAICRYCGNNISRGGmasnlkgnNTTNLWTHLRHKHR 58
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSRGG--------GTSNLIRHLRRKHP 44
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 8-60 2.74e-11

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 57.44  E-value: 2.74e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 386767977     8 NVWQHYD-INEECE--NFAICRYCGNNISRGGmasnlkGNNTTNLWTHLRHKHRDE 60
Cdd:smart00614   1 KVWKHFTlILEKDNgkQRAKCKYCGKKLSRSS------KGGTSNLRRHLRRKHPAR 50
BESS pfam02944
BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 ...
 237-271 6.28e-10

BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 and Stonewall). The motif is 40 amino acid residues long and is composed of two predicted alpha helices. Based on the protein in which it is found and the presence of conserved positively charged residues it is predicted to be a DNA binding domain. This domain appears to be specific to drosophila.


Pssm-ID: 460758  Cd Length: 35  Bit Score: 53.16  E-value: 6.28e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 386767977  237 DDDYYFALSLVPAMRHLSLSRKMYVRSKIQDILFK 271
Cdd:pfam02944   1 DSDDLFLLSLLPTMKRLPPKQKLKFKIKILQLLQE 35
 
Name Accession Description Interval E-value
zf-BED pfam02892
BED zinc finger;
7-58 9.14e-15

BED zinc finger;


Pssm-ID: 427043  Cd Length: 44  Bit Score: 67.01  E-value: 9.14e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 386767977    7 SNVWQHYDINEECENFAICRYCGNNISRGGmasnlkgnNTTNLWTHLRHKHR 58
Cdd:pfam02892   1 SKVWKYFRELPLDETKAVCRYCGKILSRGG--------GTSNLIRHLRRKHP 44
ZnF_BED smart00614
BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and ...
 8-60 2.74e-11

BED zinc finger; DNA-binding domain in chromatin-boundary-element-binding proteins and transposases


Pssm-ID: 214746 [Multi-domain]  Cd Length: 50  Bit Score: 57.44  E-value: 2.74e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 386767977     8 NVWQHYD-INEECE--NFAICRYCGNNISRGGmasnlkGNNTTNLWTHLRHKHRDE 60
Cdd:smart00614   1 KVWKHFTlILEKDNgkQRAKCKYCGKKLSRSS------KGGTSNLRRHLRRKHPAR 50
BESS pfam02944
BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 ...
 237-271 6.28e-10

BESS motif; The BESS motif is named after the proteins in which it is found (BEAF, Suvar(3)7 and Stonewall). The motif is 40 amino acid residues long and is composed of two predicted alpha helices. Based on the protein in which it is found and the presence of conserved positively charged residues it is predicted to be a DNA binding domain. This domain appears to be specific to drosophila.


Pssm-ID: 460758  Cd Length: 35  Bit Score: 53.16  E-value: 6.28e-10
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 386767977  237 DDDYYFALSLVPAMRHLSLSRKMYVRSKIQDILFK 271
Cdd:pfam02944   1 DSDDLFLLSLLPTMKRLPPKQKLKFKIKILQLLQE 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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