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Conserved domains on  [gi|392886985|ref|NP_001251372|]
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Microtubule-associated protein futsch [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
229-552 3.73e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.64  E-value: 3.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  229 PAPAVPRPVAGKPSTRSASTTGAA----------RTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAV------ 292
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPpptvppperpRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVgsltsl 2698
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  293 ------PPRATAPPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKAE----PIAQKKVAGKVQRAAPSKPA-----SAV 357
Cdd:PHA03247 2699 adppppPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpatPGGPARPARPPTTAGPPAPAppaapAAG 2778
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  358 SAPKATAPASTSSAPATAPEASRRDPNDVTIVLDDSLFPEDFNQGSApmdivviPPTPEPPRLEEARATHPKEPIVDAED 437
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-------GPLPPPTSAQPTAPPPPPGPPPPSLP 2851
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  438 LAKAphevddVANLADVEDEiPPPVDAFKKPEPRPETNVAggsgedRISEPVDAfKKPDPVELDDFDPLKPSHPDPSAPV 517
Cdd:PHA03247 2852 LGGS------VAPGGDVRRR-PPSRSPAAKPAAPARPPVR------RLARPAVS-RSTESFALPPDQPERPPQPQAPPPP 2917
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 392886985  518 VPSGDLiiatPDPELPNIVAAVPFIPPSPKGPNDG 552
Cdd:PHA03247 2918 QPQPQP----PPPPQPQPPPPPPPRPQPPLAPTTD 2948
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
229-552 3.73e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.64  E-value: 3.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  229 PAPAVPRPVAGKPSTRSASTTGAA----------RTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAV------ 292
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPpptvppperpRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVgsltsl 2698
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  293 ------PPRATAPPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKAE----PIAQKKVAGKVQRAAPSKPA-----SAV 357
Cdd:PHA03247 2699 adppppPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpatPGGPARPARPPTTAGPPAPAppaapAAG 2778
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  358 SAPKATAPASTSSAPATAPEASRRDPNDVTIVLDDSLFPEDFNQGSApmdivviPPTPEPPRLEEARATHPKEPIVDAED 437
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-------GPLPPPTSAQPTAPPPPPGPPPPSLP 2851
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  438 LAKAphevddVANLADVEDEiPPPVDAFKKPEPRPETNVAggsgedRISEPVDAfKKPDPVELDDFDPLKPSHPDPSAPV 517
Cdd:PHA03247 2852 LGGS------VAPGGDVRRR-PPSRSPAAKPAAPARPPVR------RLARPAVS-RSTESFALPPDQPERPPQPQAPPPP 2917
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 392886985  518 VPSGDLiiatPDPELPNIVAAVPFIPPSPKGPNDG 552
Cdd:PHA03247 2918 QPQPQP----PPPPQPQPPPPPPPRPQPPLAPTTD 2948
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
225-536 5.83e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 46.49  E-value: 5.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  225 LLGIPAPAVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTrsATPATRTAVPPRATAPPKAAP 304
Cdd:pfam17823 114 ALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHA--ASPAPRTAASSTTAASSTTAA 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  305 ASKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVA----------------GKVQRAAPSKPASAVSAPKATAPAST 368
Cdd:pfam17823 192 SSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAavgnsspaagtvtaavGTVTPAALATLAAAAGTVASAAGTIN 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  369 SSAP-ATAPEASRRDPNDvtiVLDDSLFPEDFNQGSAPM-----DIVVIPPTPEPPRLEEARATHPKEPI---------- 432
Cdd:pfam17823 272 MGDPhARRLSPAKHMPSD---TMARNPAAPMGAQAQGPIiqvstDQPVHNTAGEPTPSPSNTTLEPNTPKsvastnlavv 348
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  433 ----VDAEDLAKAPHEVDDVANLADVEDEIPPpvdafKKPEPRPETNVAGGSGEDRISEPVDAFKKPDPvelDDFDPLKP 508
Cdd:pfam17823 349 tttkAQAKEPSASPVPVLHTSMIPEVEATSPT-----TQPSPLLPTQGAAGPGILLAPEQVATEATAGT---ASAGPTPR 420
                         330       340       350
                  ....*....|....*....|....*....|....
gi 392886985  509 SHPDPSAPVVPS------GDLIIATPDPELPNIV 536
Cdd:pfam17823 421 SSGDPKTLAMAScqlstqGQYLVVTTDPLTPALV 454
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
229-552 3.73e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.64  E-value: 3.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  229 PAPAVPRPVAGKPSTRSASTTGAA----------RTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAV------ 292
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPpptvppperpRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVgsltsl 2698
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  293 ------PPRATAPPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKAE----PIAQKKVAGKVQRAAPSKPA-----SAV 357
Cdd:PHA03247 2699 adppppPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpatPGGPARPARPPTTAGPPAPAppaapAAG 2778
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  358 SAPKATAPASTSSAPATAPEASRRDPNDVTIVLDDSLFPEDFNQGSApmdivviPPTPEPPRLEEARATHPKEPIVDAED 437
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-------GPLPPPTSAQPTAPPPPPGPPPPSLP 2851
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  438 LAKAphevddVANLADVEDEiPPPVDAFKKPEPRPETNVAggsgedRISEPVDAfKKPDPVELDDFDPLKPSHPDPSAPV 517
Cdd:PHA03247 2852 LGGS------VAPGGDVRRR-PPSRSPAAKPAAPARPPVR------RLARPAVS-RSTESFALPPDQPERPPQPQAPPPP 2917
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 392886985  518 VPSGDLiiatPDPELPNIVAAVPFIPPSPKGPNDG 552
Cdd:PHA03247 2918 QPQPQP----PPPPQPQPPPPPPPRPQPPLAPTTD 2948
PHA03247 PHA03247
large tegument protein UL36; Provisional
217-549 5.46e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 57.26  E-value: 5.46e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  217 PTVKSKDALLGIPAPAV---PRPVAGKPSTRSASTTGAAR-TRPAVPAVSAPRAltsrAPAGPARPTT-TRSATPATrTA 291
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPtpePAPHALVSATPLPPGPAAARqASPALPAAPAPPA----VPAGPATPGGpARPARPPT-TA 2764
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  292 VPPRATAPPKaapaskaptRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSA 371
Cdd:PHA03247 2765 GPPAPAPPAA---------PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ 2835
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  372 PATAPEASrrDPNDVTIVLDDSLFP-EDFNQGSAPMDIVVIPPTPEPPRLEEARATHPKEPivdAEDLAKAPHEVddvan 450
Cdd:PHA03247 2836 PTAPPPPP--GPPPPSLPLGGSVAPgGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRS---TESFALPPDQP----- 2905
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  451 ladvedEIPPPVDAFKKPEPRPEtnvaggsgedrisEPVDAFKKPDPVELDDFDPLKPSHPDPSAPVVPSGdliiATPDP 530
Cdd:PHA03247 2906 ------ERPPQPQAPPPPQPQPQ-------------PPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG----AVPQP 2962
                         330       340
                  ....*....|....*....|...
gi 392886985  531 EL----PNIVAAVPFIPPSPKGP 549
Cdd:PHA03247 2963 WLgalvPGRVAVPRFRVPQPAPS 2985
PHA03247 PHA03247
large tegument protein UL36; Provisional
221-577 1.79e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  221 SKDAllGIPAPAVPrPVAGKPSTRSASTTGAARTRPAVPAVSApRALTSRAPAGPARPTTTRSATPATRtavppratapp 300
Cdd:PHA03247 2545 SDDA--GDPPPPLP-PAAPPAAPDRSVPPPRPAPRPSEPAVTS-RARRPDAPPQSARPRAPVDDRGDPR----------- 2609
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  301 kaapASKAPTRAPiPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAP-KATAPASTSSAPATAPEAS 379
Cdd:PHA03247 2610 ----GPAPPSPLP-PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPrRARRLGRAAQASSPPQRPR 2684
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  380 RRDPNDVTIVLDDSLFPEDFNQGSAPMDIVVIPPTPEPPRLEEARATHPKEPIvdaedlAKAPHEVDDVANLADVEDEIP 459
Cdd:PHA03247 2685 RRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPA------APAPPAVPAGPATPGGPARPA 2758
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  460 PPVDAFKKPEPRPETNVAGGsgedrisePVDAFKKPDPVELDDFDPLKPSHPDPSAPVVP-----SGDLIIATPDPELPN 534
Cdd:PHA03247 2759 RPPTTAGPPAPAPPAAPAAG--------PPRRLTRPAVASLSESRESLPSPWDPADPPAAvlapaAALPPAASPAGPLPP 2830
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*....
gi 392886985  535 IVAAVPFIPPSPKGPND------GLVKLDDELEKIAPGFEEPLIPQAPR 577
Cdd:PHA03247 2831 PTSAQPTAPPPPPGPPPpslplgGSVAPGGDVRRRPPSRSPAAKPAAPA 2879
PHA03247 PHA03247
large tegument protein UL36; Provisional
203-552 2.09e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  203 SLDKAAKSLPFLNAPTVKSKDALLGIPAPAVPRPVAGK-PSTRSASTTGAARTRPAVPAVSAPRAlTSRAPAGPARPTTT 281
Cdd:PHA03247 2694 SLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQAsPALPAAPAPPAVPAGPATPGGPARPA-RPPTTAGPPAPAPP 2772
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  282 RSatPATRTAVPPRATAPPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPK 361
Cdd:PHA03247 2773 AA--PAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSL 2850
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  362 AT----APA------STSSAPATAPEASRRDPNDVTIVLDDSLFPEDFNQGSAPMDIVVIPPTPEPPRLEE--------- 422
Cdd:PHA03247 2851 PLggsvAPGgdvrrrPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPqpppppqpq 2930
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  423 ------ARATHPKEPIVDAEDLAKAPHEVDDVANLADVEDEIPPPvdAFKKPEPRPETNVAGGSGEDRISEPVDAFKK-- 494
Cdd:PHA03247 2931 ppppppPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP--RFRVPQPAPSREAPASSTPPLTGHSLSRVSSwa 3008
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392886985  495 ----------PDPVELDD--FDPLKPSHPDPSAPVVP-SGDLIIATPDPeLPNIVAAVPFIPPSPKGPNDG 552
Cdd:PHA03247 3009 sslalheetdPPPVSLKQtlWPPDDTEDSDADSLFDSdSERSDLEALDP-LPPEPHDPFAHEPDPATPEAG 3078
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
332-540 1.45e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.72  E-value: 1.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 332 KAEPIAQKKVAGKVQRAAPSKPASAVSAPkATAPASTSSAPATAPEASRRDPNDVTIVLDdslfpedfNQGSAPMDIVVI 411
Cdd:PRK12323 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAP-AAAPAAAAAARAVAAAPARRSPAPEALAAA--------RQASARGPGGAP 448
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 412 PPTPEPPRLEEARATHPKEPIVDAEDLAKAPHEVDDVANLADVEDEIPPPVDafkkpEPRPETNVAGGSGEDRISEPVDA 491
Cdd:PRK12323 449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWE-----ELPPEFASPAPAQPDAAPAGWVA 523
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 392886985 492 FKKPDPVELDDFDPLKPSHPDPSAPVVPSgdliiatPDPELPNIVAAVP 540
Cdd:PRK12323 524 ESIPDPATADPDDAFETLAPAPAAAPAPR-------AAAATEPVVAPRP 565
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
175-448 2.37e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 48.31  E-value: 2.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 175 LLWRPAMTDQSAVrvlisGTSSLARIQQSLDKAAKSLPFLNAPTVKSKDALLGIPAPAVPRPVAGKPSTRSASTTGAART 254
Cdd:PRK07003 356 LAFEPAVTGGGAP-----GGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAP 430
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 255 RPAVPAVSAPRALTSRAPAGPARPTTTR-SATPATRTAVPPRATAPPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKA 333
Cdd:PRK07003 431 APPATADRGDDAADGDAPVPAKANARASaDSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDA 510
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 334 EPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRR-------DPNDVTIVLDDSLFPEDFNQGSAPM 406
Cdd:PRK07003 511 RAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNagmrvssDRGARAAAAAKPAAAPAAAPKPAAP 590
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 392886985 407 DIVVIPPTPEPPRLEEARATHPKEPIVDAEDLAKAPHEVDDV 448
Cdd:PRK07003 591 RVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDI 632
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
207-380 3.11e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 3.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 207 AAKSLPFLNAPTVKSKDALLGIPAPAVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATP 286
Cdd:PRK12323 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAP 480
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 287 ATRTAVPPRATAPPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAgkvQRAAPSKPASAVSAPKATAPa 366
Cdd:PRK12323 481 ARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDD---AFETLAPAPAAAPAPRAAAA- 556
                        170
                 ....*....|....
gi 392886985 367 STSSAPATAPEASR 380
Cdd:PRK12323 557 TEPVVAPRPPRASA 570
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
229-458 3.94e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 47.29  E-value: 3.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 229 PAPAVPRPVAGK---PSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVppratappkaapa 305
Cdd:PRK12727  71 PAPQAPTKPAAPvhaPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAAAPVRAASIPS------------- 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 306 skaptraPIPARSAPAPPRGAPAKAPKAEP-IAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPn 384
Cdd:PRK12727 138 -------PAAQALAHAAAVRTAPRQEHALSaVPEQLFADFLTTAPVPRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDD- 209
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392886985 385 dvtivlDDSLFPEDFNQGSAPMDIVviPPTPEPPrleeaRATHPKEPIVDAEDLAKAPHEVDDvANLADVEDEI 458
Cdd:PRK12727 210 ------DEQLDDDGFDLDDALPQIL--PPAALPP-----IVVAPAAPAALAAVAAAAPAPQND-EELKQLRGEL 269
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
234-457 3.99e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.29  E-value: 3.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 234 PRPVAGKPSTRSASTTGAARTRPAVPAVSAPRAltsrAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPASKAPTRAP 313
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPA----APAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 314 IPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPNDVTIVLDDs 393
Cdd:PRK07764 666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE- 744
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 394 lfPEDFNQGSAPMDIVVIPPTPEPPR--LEEARATHPKEPIVDAEDLAKAPHEVD----DVANLADVEDE 457
Cdd:PRK07764 745 --PDDPPDPAGAPAQPPPPPAPAPAAapAAAPPPSPPSEEEEMAEDDAPSMDDEDrrdaEEVAMELLEEE 812
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
225-536 5.83e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 46.49  E-value: 5.83e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  225 LLGIPAPAVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTrsATPATRTAVPPRATAPPKAAP 304
Cdd:pfam17823 114 ALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPHA--ASPAPRTAASSTTAASSTTAA 191
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  305 ASKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVA----------------GKVQRAAPSKPASAVSAPKATAPAST 368
Cdd:pfam17823 192 SSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAavgnsspaagtvtaavGTVTPAALATLAAAAGTVASAAGTIN 271
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  369 SSAP-ATAPEASRRDPNDvtiVLDDSLFPEDFNQGSAPM-----DIVVIPPTPEPPRLEEARATHPKEPI---------- 432
Cdd:pfam17823 272 MGDPhARRLSPAKHMPSD---TMARNPAAPMGAQAQGPIiqvstDQPVHNTAGEPTPSPSNTTLEPNTPKsvastnlavv 348
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  433 ----VDAEDLAKAPHEVDDVANLADVEDEIPPpvdafKKPEPRPETNVAGGSGEDRISEPVDAFKKPDPvelDDFDPLKP 508
Cdd:pfam17823 349 tttkAQAKEPSASPVPVLHTSMIPEVEATSPT-----TQPSPLLPTQGAAGPGILLAPEQVATEATAGT---ASAGPTPR 420
                         330       340       350
                  ....*....|....*....|....*....|....
gi 392886985  509 SHPDPSAPVVPS------GDLIIATPDPELPNIV 536
Cdd:pfam17823 421 SSGDPKTLAMAScqlstqGQYLVVTTDPLTPALV 454
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
339-511 7.49e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 46.64  E-value: 7.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 339 KKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPNDVTIVLDDSLfpedfNQGSAPMDIVVIPPTPEPP 418
Cdd:PRK14949 637 KKSSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAAL-----ASGSAPAPPPVPDPYDRPP 711
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 419 rLEEARAT--HPKEPIVDAEDLAKAPHEVDDVANLADVEDEIPPPVDafKKPEPRPETNVAggsgedrisEPVDAFKKPD 496
Cdd:PRK14949 712 -WEEAPEVasANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQ--VQAEAQSPASTT---------ALTQTSSEVQ 779
                        170
                 ....*....|....*
gi 392886985 497 PVELDdfDPLKPSHP 511
Cdd:PRK14949 780 DTELN--LVLLSSGS 792
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
229-383 1.26e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.64  E-value: 1.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 229 PAPAVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRT---AVPPRATAPPKAAPA 305
Cdd:PRK12323 401 APPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAArpaAAGPRPVAAAAAAAP 480
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392886985 306 SKAPtRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDP 383
Cdd:PRK12323 481 ARAA-PAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAAT 557
PHA03247 PHA03247
large tegument protein UL36; Provisional
207-435 1.62e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 1.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  207 AAKSLPFLNAPTVKSKDALLGIPAPAvpRPVAGKPSTRSASTTGAARTRPAV-----PAVSAPRALTSRAPAGPARPTTT 281
Cdd:PHA03247 2834 AQPTAPPPPPGPPPPSLPLGGSVAPG--GDVRRRPPSRSPAAKPAAPARPPVrrlarPAVSRSTESFALPPDQPERPPQP 2911
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  282 RSATPATRTAvppRATAPPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQ----RAAPSKPASAV 357
Cdd:PHA03247 2912 QAPPPPQPQP---QPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAvprfRVPQPAPSREA 2988
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  358 SAPkATAPASTSSAPATAPEAS----RRDPNDVTIVLDDSLFPED----------FNQGSAPMDIVVIPPTPEPPRLEEA 423
Cdd:PHA03247 2989 PAS-STPPLTGHSLSRVSSWASslalHEETDPPPVSLKQTLWPPDdtedsdadslFDSDSERSDLEALDPLPPEPHDPFA 3067
                         250
                  ....*....|..
gi 392886985  424 RATHPKEPIVDA 435
Cdd:PHA03247 3068 HEPDPATPEAGA 3079
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
229-425 5.02e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 5.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 229 PAPAVPRPVAGKPSTRSAST--TGAARTRPAVPAVSAPRALTSRAPA-GPARPTTTRSATPATRTAVPPRATAPPKAAPA 305
Cdd:PRK12323 374 PATAAAAPVAQPAPAAAAPAaaAPAPAAPPAAPAAAPAAAAAARAVAaAPARRSPAPEALAAARQASARGPGGAPAPAPA 453
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 306 SKAptrAPIPA-RSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPN 384
Cdd:PRK12323 454 PAA---APAAAaRPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPA 530
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 392886985 385 DvtiVLDDSLFPEdfnQGSAPMDIVVIPPTPEPPRLEEARA 425
Cdd:PRK12323 531 T---ADPDDAFET---LAPAPAAAPAPRAAAATEPVVAPRP 565
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
232-378 7.53e-04

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 42.63  E-value: 7.53e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 232 AVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPASKAPTR 311
Cdd:PTZ00436 203 AAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAA 282
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392886985 312 APiPARSAPAPPRGAPAKAPKAEPIAqKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEA 378
Cdd:PTZ00436 283 AP-PAKAAAPPAKAAAAPAKAAAAPA-KAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPAKAAAA 347
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
235-373 8.92e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 8.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 235 RPVAGKPSTRSASTTGAARTRPAVPAVsAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPkaapASKAPTRAPI 314
Cdd:PRK14951 365 KPAAAAEAAAPAEKKTPARPEAAAPAA-APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP----AAAAPAAAPA 439
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 392886985 315 PARSAPAPPRGapakapkAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPA 373
Cdd:PRK14951 440 AAPAAVALAPA-------PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK10263 PRK10263
DNA translocase FtsK; Provisional
232-577 9.66e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 43.15  E-value: 9.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  232 AVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRAltsraPAGPARPTTTRSATPATRTAvppratappkaapaskAPTR 311
Cdd:PRK10263  315 PITEPVAVAAAATTATQSWAAPVEPVTQTPPVASV-----DVPPAQPTVAWQPVPGPQTG----------------EPVI 373
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  312 APIPaRSAPAPPRGAPAKAPKAEPIaQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPNDVTIVLD 391
Cdd:PRK10263  374 APAP-EGYPQQSQYAQPAVQYNEPL-QQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEE 451
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  392 -DSLF-PEDFNQGSAPMDIVVIPPTPE--PPRLEEARATHPkEPIVDAEDLAKaphevddvanladvedeipPPVDAFKK 467
Cdd:PRK10263  452 qQSTFaPQSTYQTEQTYQQPAAQEPLYqqPQPVEQQPVVEP-EPVVEETKPAR-------------------PPLYYFEE 511
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  468 PEPRpetnvaggsgEDRISEPVDAFKKPDPVELDDFDPLKPSHPDPSAPVVPSgdliiatpdpelpniVAAVPFIPPSPK 547
Cdd:PRK10263  512 VEEK----------RAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPP---------------VEAAAAVSPLAS 566
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 392886985  548 GPNDGLVKLDDELEKIAPGF------------EEPLIPQAPR 577
Cdd:PRK10263  567 GVKKATLATGAAATVAAPVFslansggprpqvKEGIGPQLPR 608
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
235-423 1.08e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 235 RPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPASKAPTRAPI 314
Cdd:PRK07003 354 RMLAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPP 433
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 315 PARSAPAPPRGAPAKAPKAEPIaqkkvagkvqRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPNDVTIVLDDSL 394
Cdd:PRK07003 434 ATADRGDDAADGDAPVPAKANA----------RASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT 503
                        170       180       190
                 ....*....|....*....|....*....|..
gi 392886985 395 FP---EDFNQGSAPMDIVVIPPTPEPPRLEEA 423
Cdd:PRK07003 504 PAavpDARAPAAASREDAPAAAAPPAPEARPP 535
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
235-468 1.26e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 42.56  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 235 RPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAApaskaptrapi 314
Cdd:PRK12323 359 RMLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRS----------- 427
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 315 PARSAPApprgapakapkAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPNDVTIVLDDSL 394
Cdd:PRK12323 428 PAPEALA-----------AARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392886985 395 FPEDfnqgSAPMDIVVIPPTPEPPRLEEARATHPKEPIVDAEDLAKAPHEVDDVANLADVEDEIPPPVDAFKKP 468
Cdd:PRK12323 497 PPWE----ELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
227-580 1.61e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 1.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 227 GIPAPAVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTrsATPATRTAVPPRATAPPKAAPAS 306
Cdd:PRK07764 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA--PAPPSPAGNAPAGGAPSPPPAAA 461
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 307 KAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAgkvQRAAPSKPASAVSAPKATAPA--------STSSAPATAPEA 378
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP---AAPAAPAGADDAATLRERWPEilaavpkrSRKTWAILLPEA 538
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 379 SRRDPNDVTIVL--DDSLFPEDFNQGSAPMDIV---------------VIPPTPEPPRLEEARATHPKEPIVDAEDLAKA 441
Cdd:PRK07764 539 TVLGVRGDTLVLgfSTGGLARRFASPGNAEVLVtalaeelggdwqveaVVGPAPGAAGGEGPPAPASSGPPEEAARPAAP 618
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 442 PHEVDDVANLADVEDEIPPPVDAFKKPEPRPETNVAGGSGEDRISEPVDafkkPDPVELDDFDPLKPSHPDPSAPVVPSG 521
Cdd:PRK07764 619 AAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD----GWPAKAGGAAPAAPPPAPAPAAPAAPA 694
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392886985 522 DLIIATPDPELPNIVAAVPFI--PPSPKGPNDGLVKLDDELEKIAPGFEEPLIPQAPRDDG 580
Cdd:PRK07764 695 GAAPAQPAPAPAATPPAGQADdpAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAP 755
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
241-375 2.25e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 41.48  E-value: 2.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  241 PSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPatRTAVPPRATAPPkaapaskapTRAPIPARSAP 320
Cdd:pfam17823 100 PATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAP--RAAACRANASAA---------PRAAIAAASAP 168
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 392886985  321 APPRGAPAKAPKAEPIAQKKVAgkvqrAAPSKPASAVSAPKATAPASTSSAPATA 375
Cdd:pfam17823 169 HAASPAPRTAASSTTAASSTTA-----ASSAPTTAASSAPATLTPARGISTAATA 218
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
229-383 2.43e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 41.40  E-value: 2.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 229 PAPAVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRAT------APPKA 302
Cdd:PRK12323 428 PAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPppweelPPEFA 507
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 303 APASKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQR-AAPSKPASAVSAPKATAPASTSSAPATAPEASRR 381
Cdd:PRK12323 508 SPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRaAAATEPVVAPRPPRASASGLPDMFDGDWPALAAR 587

                 ..
gi 392886985 382 DP 383
Cdd:PRK12323 588 LP 589
PHA03247 PHA03247
large tegument protein UL36; Provisional
217-583 3.34e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 3.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  217 PTVKSKDALLGIPA----PAVPRPVAGKPSTRSASTTGAARTRPAVPAVSAPRALTSRAPAG---PARPTTTRSATPATR 289
Cdd:PHA03247 2580 PAVTSRARRPDAPPqsarPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHpppTVPPPERPRDDPAPG 2659
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  290 TAVPPRATAPPKAAPASKAPTRAPIParsapapPRGAPAKAPKAEpIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTS 369
Cdd:PHA03247 2660 RVSRPRRARRLGRAAQASSPPQRPRR-------RAARPTVGSLTS-LADPPPPPPTPEPAPHALVSATPLPPGPAAARQA 2731
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  370 SAPATAPEASRRDPNdvTIVLDDSLFPEDFNQGSAPmdivviPPTPEPPRLEEA----RATHPK-EPIVDAEDLAKAPHE 444
Cdd:PHA03247 2732 SPALPAAPAPPAVPA--GPATPGGPARPARPPTTAG------PPAPAPPAAPAAgpprRLTRPAvASLSESRESLPSPWD 2803
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985  445 VDDVANLADVEDEIPPPVDAFKKPEPRPETNV----AGGSGEDRISEPVDAFKKPDpvelDDFDPLKPSHPDPSAPVVPS 520
Cdd:PHA03247 2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQptapPPPPGPPPPSLPLGGSVAPG----GDVRRRPPSRSPAAKPAAPA 2879
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 392886985  521 GDLI--IATPDPELPNIVAAVPFIPPSPKGPNDGLVKLDDELEKIAPGFEEPLIPQAPRDDGTLA 583
Cdd:PHA03247 2880 RPPVrrLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
207-441 4.00e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 4.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 207 AAKSLPFLNAPTVKSKDALLGIPAPAVPRPVAGKPSTRSASTTGAArtRPAVPAVSAPRALTSRAPAGPARPTTTRSATP 286
Cdd:PRK07764 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAP--AEASAAPAPGVAAPEHHPKHVAVPDASDGGDG 668
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 287 ATRTAVPPRATAPPKAAPASKAPTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGkvQRAAPSKPASAVSAPKATAPA 366
Cdd:PRK07764 669 WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA--QGASAPSPAADDPVPLPPEPD 746
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 392886985 367 StSSAPATAPEASRRDPndvtivlddSLFPEDFNQGSAPmdivVIPPTPEPPRLEEARATHPKEPIVDAEDLAKA 441
Cdd:PRK07764 747 D-PPDPAGAPAQPPPPP---------APAPAAAPAAAPP----PSPPSEEEEMAEDDAPSMDDEDRRDAEEVAME 807
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
229-383 4.18e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.62  E-value: 4.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 229 PAPAVPRPVAGKPSTRSASTTGA-ARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPASK 307
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQAtAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKK 440
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 308 APTRAPIPARSAPAPPRGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAVSAPKATAPASTSS---------APATAPEA 378
Cdd:PRK07994 441 SEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKAlehektpelAAKLAAEA 520

                 ....*
gi 392886985 379 SRRDP 383
Cdd:PRK07994 521 IERDP 525
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
252-378 4.37e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 40.32  E-value: 4.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 252 ARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPASKAPTRAPiPARSAPAPPRGAPAKAP 331
Cdd:PTZ00436 188 ARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAA-PAKAAAPPAKAAAPPAK 266
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 392886985 332 KAEPIAqKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEA 378
Cdd:PTZ00436 267 AAAPPA-KAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAA 312
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
197-292 5.48e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.18  E-value: 5.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 197 LARIQQSLDKAAKSLPflNAPTVKSKDALLGIPAPAVPRPVAgkpSTRSASTTGAARTRPAVPAVSAPRALTSRAPAGPA 276
Cdd:PRK14950 353 LAVIEALLVPVPAPQP--AKPTAAAPSPVRPTPAPSTRPKAA---AAANIPPKEPVRETATPPPVPPRPVAPPVPHTPES 427
                         90
                 ....*....|....*.
gi 392886985 277 RPTTTRSATPATRTAV 292
Cdd:PRK14950 428 APKLTRAAIPVDEKPK 443
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
246-378 5.67e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 39.93  E-value: 5.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392886985 246 ASTTGAARTRPAVPAVSAPRALTSRAPAGPARPTTT--RSATPATRTAVPPRATAPPKAAPASKAPTRAPIPARSAPAPP 323
Cdd:PTZ00436 193 AAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAApaKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPA 272
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 392886985 324 RGAPAKAPKAEPIAQKKVAGKVQRAAPSKPASAvSAPKATAPASTSSAPATAPEA 378
Cdd:PTZ00436 273 KAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAA-PAKAAAAPAKAAAPPAKAAAP 326
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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