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Conserved domains on  [gi|392887854|ref|NP_001252425|]
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Armadillo/beta-catenin-like repeat protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CTNNAbd_CTNNB1-like cd21719
alpha-catenin binding domain found in catenin beta-1 (CTNNB1), catenin gamma (CTNNG) and ...
40-103 1.19e-15

alpha-catenin binding domain found in catenin beta-1 (CTNNB1), catenin gamma (CTNNG) and similar proteins; This family includes alpha-catenin binding domain found in catenin beta-1 (CTNNB1), catenin gamma (CTNNG), as well as Drosophila melanogaster armadillo segment polarity protein (dArm). CTNNB1, also called beta-catenin, is a key downstream component of the canonical Wnt signaling pathway. It is involved in the regulation of cell adhesion, as component of an E-cadherin:catenin adhesion complex. It acts as a negative regulator of centrosome cohesion. It is involved in the CDK2/PTPN6/CTNNB1/CEACAM1 pathway of insulin internalization. It blocks anoikis of malignant kidney and intestinal epithelial cells, and promotes their anchorage-independent growth by down-regulating DAPK2. It disrupts PML function and PML-NB formation by inhibiting RANBP2-mediated sumoylation of PML. CTNNG, also called junction plakoglobin (JUP), or desmoplakin III, or desmoplakin-3 (DP3), is a common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. CTNNG acts as a substrate for VE-PTP and is required to stimulate VE-cadherin function in endothelial cells. It can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton. dArm, which shows high sequence similarity with CTNNB1, is a Drosophila catenin that plays a role during central nervous system development. It can associate with alpha-catenin. Its neural isoform may associate with CadN and participate in the transmission of developmental information. Its cytoplasmic isoform accumulates through Wingless (Wg) signaling; arm function in Wg signal transduction is required early in development for determination of neuroblast fate. Arm and Abl proteins function cooperatively at adherens junctions in both the CNS and epidermis. This model corresponds to a small region at the C-termini of dArm, CTNNB1 and CTNNG; in CTNNB1, this region is responsible for alpha-catenin binding.


:

Pssm-ID: 439240  Cd Length: 70  Bit Score: 71.93  E-value: 1.19e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392887854  40 DHEVETRTSRIRSAMFPDWIPPTSAAEAT---NSTTSIVEMMQMPTQQLKQSVMDLLTYEGSNDMSG 103
Cdd:cd21719    3 DQLTQTRAQRVRAAMFPETLDEGEEIPSTqfdPGRSTNVQRLAEPSQLLKTAVVNLINYQDDADLAT 69
HEAT COG1413
HEAT repeat [General function prediction only];
105-255 2.44e-05

HEAT repeat [General function prediction only];


:

Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 44.62  E-value: 2.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392887854 105 SLPDLVKLMCDHDESVVARAvhrAYMLSRedpnffnapgFDHRSFVEALMAASKSSNVNVRRNAIGALSHMSEQRGGPLL 184
Cdd:COG1413   17 AVPALIAALADEDPDVRAAA---ARALGR----------LGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAVPAL 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392887854 185 ifrsgglaeiIRMLYDSLESVVHYAVTTLRNLlmhvsdsraqaRALNAVEALTPHLHKTNPKLLAQVADGL 255
Cdd:COG1413   84 ----------IAALKDEDPEVRRAAAEALGRL-----------GDPAAVPALLEALKDPDWEVRRAAARAL 133
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
305-346 3.07e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 38.59  E-value: 3.07e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 392887854  305 CPSNKPALISLGCLPALyVELCTAKDERSQTAILVAMRNLSD 346
Cdd:pfam00514   1 SPENKQAVIEAGAVPPL-VRLLSSPDEEVQEEAAWALSNLAA 41
SRP1 super family cl34886
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
311-394 4.16e-03

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


The actual alignment was detected with superfamily member COG5064:

Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 40.26  E-value: 4.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392887854 311 ALISLGCLPALyVELCTAKDERSQTAILVAMRNLsdsATNEENLTQLIIK------LLEIIRVANDGMTACACGTLSNLT 384
Cdd:COG5064  280 AVLDVGIPGRL-VELLSHESAKIQTPALRSVGNI---VTGSDDQTQVIINcgalkaFRSLLSSPKENIRKEACWTISNIT 355
                         90
                 ....*....|
gi 392887854 385 CNNTRNKQTV 394
Cdd:COG5064  356 AGNTEQIQAV 365
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
387-429 5.03e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 35.12  E-value: 5.03e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 392887854  387 NTRNKQTVCSHGGIDALVTAIRrlPEVEEVTEPALCALRHCTA 429
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLS--SPDEEVQEEAAWALSNLAA 41
 
Name Accession Description Interval E-value
CTNNAbd_CTNNB1-like cd21719
alpha-catenin binding domain found in catenin beta-1 (CTNNB1), catenin gamma (CTNNG) and ...
40-103 1.19e-15

alpha-catenin binding domain found in catenin beta-1 (CTNNB1), catenin gamma (CTNNG) and similar proteins; This family includes alpha-catenin binding domain found in catenin beta-1 (CTNNB1), catenin gamma (CTNNG), as well as Drosophila melanogaster armadillo segment polarity protein (dArm). CTNNB1, also called beta-catenin, is a key downstream component of the canonical Wnt signaling pathway. It is involved in the regulation of cell adhesion, as component of an E-cadherin:catenin adhesion complex. It acts as a negative regulator of centrosome cohesion. It is involved in the CDK2/PTPN6/CTNNB1/CEACAM1 pathway of insulin internalization. It blocks anoikis of malignant kidney and intestinal epithelial cells, and promotes their anchorage-independent growth by down-regulating DAPK2. It disrupts PML function and PML-NB formation by inhibiting RANBP2-mediated sumoylation of PML. CTNNG, also called junction plakoglobin (JUP), or desmoplakin III, or desmoplakin-3 (DP3), is a common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. CTNNG acts as a substrate for VE-PTP and is required to stimulate VE-cadherin function in endothelial cells. It can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton. dArm, which shows high sequence similarity with CTNNB1, is a Drosophila catenin that plays a role during central nervous system development. It can associate with alpha-catenin. Its neural isoform may associate with CadN and participate in the transmission of developmental information. Its cytoplasmic isoform accumulates through Wingless (Wg) signaling; arm function in Wg signal transduction is required early in development for determination of neuroblast fate. Arm and Abl proteins function cooperatively at adherens junctions in both the CNS and epidermis. This model corresponds to a small region at the C-termini of dArm, CTNNB1 and CTNNG; in CTNNB1, this region is responsible for alpha-catenin binding.


Pssm-ID: 439240  Cd Length: 70  Bit Score: 71.93  E-value: 1.19e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392887854  40 DHEVETRTSRIRSAMFPDWIPPTSAAEAT---NSTTSIVEMMQMPTQQLKQSVMDLLTYEGSNDMSG 103
Cdd:cd21719    3 DQLTQTRAQRVRAAMFPETLDEGEEIPSTqfdPGRSTNVQRLAEPSQLLKTAVVNLINYQDDADLAT 69
HEAT COG1413
HEAT repeat [General function prediction only];
105-255 2.44e-05

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 44.62  E-value: 2.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392887854 105 SLPDLVKLMCDHDESVVARAvhrAYMLSRedpnffnapgFDHRSFVEALMAASKSSNVNVRRNAIGALSHMSEQRGGPLL 184
Cdd:COG1413   17 AVPALIAALADEDPDVRAAA---ARALGR----------LGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAVPAL 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392887854 185 ifrsgglaeiIRMLYDSLESVVHYAVTTLRNLlmhvsdsraqaRALNAVEALTPHLHKTNPKLLAQVADGL 255
Cdd:COG1413   84 ----------IAALKDEDPEVRRAAAEALGRL-----------GDPAAVPALLEALKDPDWEVRRAAARAL 133
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
305-346 3.07e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 38.59  E-value: 3.07e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 392887854  305 CPSNKPALISLGCLPALyVELCTAKDERSQTAILVAMRNLSD 346
Cdd:pfam00514   1 SPENKQAVIEAGAVPPL-VRLLSSPDEEVQEEAAWALSNLAA 41
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
311-394 4.16e-03

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 40.26  E-value: 4.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392887854 311 ALISLGCLPALyVELCTAKDERSQTAILVAMRNLsdsATNEENLTQLIIK------LLEIIRVANDGMTACACGTLSNLT 384
Cdd:COG5064  280 AVLDVGIPGRL-VELLSHESAKIQTPALRSVGNI---VTGSDDQTQVIINcgalkaFRSLLSSPKENIRKEACWTISNIT 355
                         90
                 ....*....|
gi 392887854 385 CNNTRNKQTV 394
Cdd:COG5064  356 AGNTEQIQAV 365
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
387-429 5.03e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 35.12  E-value: 5.03e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 392887854  387 NTRNKQTVCSHGGIDALVTAIRrlPEVEEVTEPALCALRHCTA 429
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLS--SPDEEVQEEAAWALSNLAA 41
 
Name Accession Description Interval E-value
CTNNAbd_CTNNB1-like cd21719
alpha-catenin binding domain found in catenin beta-1 (CTNNB1), catenin gamma (CTNNG) and ...
40-103 1.19e-15

alpha-catenin binding domain found in catenin beta-1 (CTNNB1), catenin gamma (CTNNG) and similar proteins; This family includes alpha-catenin binding domain found in catenin beta-1 (CTNNB1), catenin gamma (CTNNG), as well as Drosophila melanogaster armadillo segment polarity protein (dArm). CTNNB1, also called beta-catenin, is a key downstream component of the canonical Wnt signaling pathway. It is involved in the regulation of cell adhesion, as component of an E-cadherin:catenin adhesion complex. It acts as a negative regulator of centrosome cohesion. It is involved in the CDK2/PTPN6/CTNNB1/CEACAM1 pathway of insulin internalization. It blocks anoikis of malignant kidney and intestinal epithelial cells, and promotes their anchorage-independent growth by down-regulating DAPK2. It disrupts PML function and PML-NB formation by inhibiting RANBP2-mediated sumoylation of PML. CTNNG, also called junction plakoglobin (JUP), or desmoplakin III, or desmoplakin-3 (DP3), is a common junctional plaque protein. The membrane-associated plaques are architectural elements in an important strategic position to influence the arrangement and function of both the cytoskeleton and the cells within the tissue. The presence of plakoglobin in both the desmosomes and in the intermediate junctions suggests that it plays a central role in the structure and function of submembranous plaques. CTNNG acts as a substrate for VE-PTP and is required to stimulate VE-cadherin function in endothelial cells. It can replace beta-catenin in E-cadherin/catenin adhesion complexes which are proposed to couple cadherins to the actin cytoskeleton. dArm, which shows high sequence similarity with CTNNB1, is a Drosophila catenin that plays a role during central nervous system development. It can associate with alpha-catenin. Its neural isoform may associate with CadN and participate in the transmission of developmental information. Its cytoplasmic isoform accumulates through Wingless (Wg) signaling; arm function in Wg signal transduction is required early in development for determination of neuroblast fate. Arm and Abl proteins function cooperatively at adherens junctions in both the CNS and epidermis. This model corresponds to a small region at the C-termini of dArm, CTNNB1 and CTNNG; in CTNNB1, this region is responsible for alpha-catenin binding.


Pssm-ID: 439240  Cd Length: 70  Bit Score: 71.93  E-value: 1.19e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392887854  40 DHEVETRTSRIRSAMFPDWIPPTSAAEAT---NSTTSIVEMMQMPTQQLKQSVMDLLTYEGSNDMSG 103
Cdd:cd21719    3 DQLTQTRAQRVRAAMFPETLDEGEEIPSTqfdPGRSTNVQRLAEPSQLLKTAVVNLINYQDDADLAT 69
CTNNAbd_dArm cd21726
alpha-catenin binding domain found in Drosophila melanogaster armadillo segment polarity ...
44-102 3.33e-06

alpha-catenin binding domain found in Drosophila melanogaster armadillo segment polarity protein (dArm) and similar proteins; dArm is a Drosophila catenin that plays a role during central nervous system development. It can associate with alpha-catenin. The neural isoform of dArm may associate with CadN and participate in the transmission of developmental information. Its cytoplasmic isoform accumulates through Wingless (Wg) signaling; arm function in Wg signal transduction is required early in development for determination of neuroblast fate. Arm and Abl proteins function cooperatively at adherens junctions in both the CNS and epidermis. This model corresponds to a small region at the C-terminus of dArm, which shows high sequence similarity with alpha-catenin binding domain of catenin beta-1 (CTNNB1).


Pssm-ID: 439243  Cd Length: 75  Bit Score: 45.48  E-value: 3.33e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392887854  44 ETRTSRIRSAMFPDWIP-----PTSAAEATNSTTsiVEMMQMPTQQLKQSVMDLLTYEGSNDMS 102
Cdd:cd21726   12 QTRSQRVRAAMFPETLEegvqiPSTQFDPQQPTA--VQRLAEPSQMLKHAVVNLINYQDDADLA 73
HEAT COG1413
HEAT repeat [General function prediction only];
105-255 2.44e-05

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 44.62  E-value: 2.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392887854 105 SLPDLVKLMCDHDESVVARAvhrAYMLSRedpnffnapgFDHRSFVEALMAASKSSNVNVRRNAIGALSHMSEQRGGPLL 184
Cdd:COG1413   17 AVPALIAALADEDPDVRAAA---ARALGR----------LGDPRAVPALLEALKDPDPEVRAAAAEALGRIGDPEAVPAL 83
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392887854 185 ifrsgglaeiIRMLYDSLESVVHYAVTTLRNLlmhvsdsraqaRALNAVEALTPHLHKTNPKLLAQVADGL 255
Cdd:COG1413   84 ----------IAALKDEDPEVRRAAAEALGRL-----------GDPAAVPALLEALKDPDWEVRRAAARAL 133
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
305-346 3.07e-04

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 38.59  E-value: 3.07e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 392887854  305 CPSNKPALISLGCLPALyVELCTAKDERSQTAILVAMRNLSD 346
Cdd:pfam00514   1 SPENKQAVIEAGAVPPL-VRLLSSPDEEVQEEAAWALSNLAA 41
CTNNAbd_CTNNB1 cd21724
alpha-catenin binding domain found in catenin beta-1 (CTNNB1) and similar proteins; CTNNB1, ...
45-102 5.18e-04

alpha-catenin binding domain found in catenin beta-1 (CTNNB1) and similar proteins; CTNNB1, also called beta-catenin, is a key downstream component of the canonical Wnt signaling pathway. In the absence of Wnt, it forms a complex with AXIN1, AXIN2, APC, CSNK1A1 and GSK3B that promotes phosphorylation on N-terminal Ser and Thr residues, and ubiquitination of CTNNB1 via BTRC and its subsequent degradation by the proteasome. In the presence of Wnt ligand, CTNNB1 is not ubiquitinated and accumulates in the nucleus, where it acts as a coactivator for transcription factors of the TCF/LEF family, leading to activation of Wnt responsive genes. CTNNB1 is involved in the regulation of cell adhesion as a component of an E-cadherin:catenin adhesion complex. It acts as a negative regulator of centrosome cohesion. It is involved in the CDK2/PTPN6/CTNNB1/CEACAM1 pathway of insulin internalization. It blocks anoikis of malignant kidney and intestinal epithelial cells and promotes their anchorage-independent growth by down-regulating DAPK2. It disrupts PML function and PML-NB formation by inhibiting RANBP2-mediated sumoylation of PML. This model corresponds to a small region at the C-terminus of CTNNB1, which is responsible for alpha-catenin binding.


Pssm-ID: 439241  Cd Length: 74  Bit Score: 39.09  E-value: 5.18e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392887854  45 TRTSRIRSAMFPD------WIPPTS--AAEATNsttsiVEMMQMPTQQLKQSVMDLLTYEGSNDMS 102
Cdd:cd21724   12 TRAQRVRAAMFPEtldegmQIPSTQfdAAHPTN-----VQRLAEPSQMLKHAVVNLINYQDDAELA 72
SRP1 COG5064
Karyopherin (importin) alpha [Intracellular trafficking and secretion];
311-394 4.16e-03

Karyopherin (importin) alpha [Intracellular trafficking and secretion];


Pssm-ID: 227396 [Multi-domain]  Cd Length: 526  Bit Score: 40.26  E-value: 4.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392887854 311 ALISLGCLPALyVELCTAKDERSQTAILVAMRNLsdsATNEENLTQLIIK------LLEIIRVANDGMTACACGTLSNLT 384
Cdd:COG5064  280 AVLDVGIPGRL-VELLSHESAKIQTPALRSVGNI---VTGSDDQTQVIINcgalkaFRSLLSSPKENIRKEACWTISNIT 355
                         90
                 ....*....|
gi 392887854 385 CNNTRNKQTV 394
Cdd:COG5064  356 AGNTEQIQAV 365
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
387-429 5.03e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 35.12  E-value: 5.03e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 392887854  387 NTRNKQTVCSHGGIDALVTAIRrlPEVEEVTEPALCALRHCTA 429
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLS--SPDEEVQEEAAWALSNLAA 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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