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Conserved domains on  [gi|392890267|ref|NP_001254113|]
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protein of unknown function DB domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DB pfam01682
DB module; This domain has no known function. It is found in several C. elegans proteins. The ...
 400-502 1.07e-22

DB module; This domain has no known function. It is found in several C. elegans proteins. The domain contains 12 conserved cysteines that probably form six disulphide bridges. This domain is found associated with ig pfam00047 and fn3 pfam00041 domains, as well as in some lipases pfam00657.


:

Pssm-ID: 460293  Cd Length: 98  Bit Score: 92.59  E-value: 1.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  400 CCKGRKVHNSCERICSFDVLSKKVLtgMFLGTDACPQHHGlDLMQCAADNDDHTACCIDREVDktsagKKCLGFC---NM 476
Cdd:pfam01682   1 CCSEKGVPSSCLSLCSYDAINKDAL--LLFLAPRCPPELP-KILRCAADGRDHTPCCKRRGVP-----DKCLGFCpgnVD 72

                          90       100
                  ....*....|....*....|....*.
gi 392890267  477 KPGITFQADVSMLPCWSVLNDIKQCF 502
Cdd:pfam01682  73 LLSDVTPLDKSYLFCLSYFENIKQCF 98
PRK12757 super family cl36177
cell division protein FtsN; Provisional
 315-400 5.70e-07

cell division protein FtsN; Provisional


The actual alignment was detected with superfamily member PRK12757:

Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 50.81  E-value: 5.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 315 PPQQRTFVRPNEQFQ-QPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPrPVAPKSHLAQQPAPVTAPVAKPRTA 393
Cdd:PRK12757  98 QPTQLSEVPYNEQTPqVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQ-PQTPAPVRTQPAAPVTQAVEAPKVE 176

                         90
                 ....*....|...
gi 392890267 394 SAK------FLQC 400
Cdd:PRK12757 177 AEKekeqrwMVQC 189
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
 239-373 2.08e-03

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.84  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  239 RFIPTLKSLYSIDPPRPKNP------SYKPDEIIVDG--HRSYFedTQRTRPQSTKTRVQSVGGSVHSSSANIPRTS--- 307
Cdd:PRK10263  702 QFAQTQQQRYSGEQPAGANPfslddfEFSPMKALLDDgpHEPLF--TPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPqyq 779

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392890267  308 QPAAVVSPPQQrtfVRPNEQFQQPRVVRPQPQQQlTRPAPARPQTRRPVPQPQQATRPAPrPVAPK 373
Cdd:PRK10263  780 QPQQPVAPQPQ---YQQPQQPVAPQPQYQQPQQP-VAPQPQYQQPQQPVAPQPQYQQPQQ-PVAPQ 840
 
Name Accession Description Interval E-value
DB pfam01682
DB module; This domain has no known function. It is found in several C. elegans proteins. The ...
 400-502 1.07e-22

DB module; This domain has no known function. It is found in several C. elegans proteins. The domain contains 12 conserved cysteines that probably form six disulphide bridges. This domain is found associated with ig pfam00047 and fn3 pfam00041 domains, as well as in some lipases pfam00657.


Pssm-ID: 460293  Cd Length: 98  Bit Score: 92.59  E-value: 1.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  400 CCKGRKVHNSCERICSFDVLSKKVLtgMFLGTDACPQHHGlDLMQCAADNDDHTACCIDREVDktsagKKCLGFC---NM 476
Cdd:pfam01682   1 CCSEKGVPSSCLSLCSYDAINKDAL--LLFLAPRCPPELP-KILRCAADGRDHTPCCKRRGVP-----DKCLGFCpgnVD 72

                          90       100
                  ....*....|....*....|....*.
gi 392890267  477 KPGITFQADVSMLPCWSVLNDIKQCF 502
Cdd:pfam01682  73 LLSDVTPLDKSYLFCLSYFENIKQCF 98
PRK12757 PRK12757
cell division protein FtsN; Provisional
 315-400 5.70e-07

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 50.81  E-value: 5.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 315 PPQQRTFVRPNEQFQ-QPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPrPVAPKSHLAQQPAPVTAPVAKPRTA 393
Cdd:PRK12757  98 QPTQLSEVPYNEQTPqVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQ-PQTPAPVRTQPAAPVTQAVEAPKVE 176

                         90
                 ....*....|...
gi 392890267 394 SAK------FLQC 400
Cdd:PRK12757 177 AEKekeqrwMVQC 189
PHA03247 PHA03247
large tegument protein UL36; Provisional
 234-395 3.41e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 3.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  234 PPPPARFIPtlkslysiDPPrPKNPSYKPDEIiVDGHRSYFEDTQRTRPQSTKTRVQSVGGSVhsssanipRTSQPAAVV 313
Cdd:PHA03247 2616 PLPPDTHAP--------DPP-PPSPSPAANEP-DPHPPPTVPPPERPRDDPAPGRVSRPRRAR--------RLGRAAQAS 2677

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  314 SPPQqrtfvRPneqfqQPRVVRPqPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQPAPVTAPVAKPRTA 393
Cdd:PHA03247 2678 SPPQ-----RP-----RRRAARP-TVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746


                  ..
gi 392890267  394 SA 395
Cdd:PHA03247 2747 GP 2748
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 301-383 3.48e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.49  E-value: 3.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  301 ANIPRTSQPAAVVSPPQQRTFVRPNEQFQQPRVVR-PQPQQQLTRPAPARPQTRRPV-----PQPQQATRPAPRPVAPKS 374
Cdd:pfam09770 207 AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQqQQQPQQQPQQPQQHPGQGHPVtilqrPQSPQPDPAQPSIQPQAQ 286


                  ....*....
gi 392890267  375 HLAQQPAPV 383
Cdd:pfam09770 287 QFHQQPPPV 295
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 301-432 1.76e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.95  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  301 ANIPRTSQPAAvvspPQQRTFVRPNEQFQQPrvvrPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQP 380
Cdd:TIGR01628 420 SMMPTPMGPGG----PLRPNGLAPMNAVRAP----SRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNK 491

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 392890267  381 APVTAPVAKPRTASAKFLqcckGRKVHNSCERICSfdVLSKKVlTGMFLGTD 432
Cdd:TIGR01628 492 KLAQVLASATPQMQKQVL----GERLFPLVEAIEP--ALAAKI-TGMLLEMD 536
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 239-373 2.08e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.84  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  239 RFIPTLKSLYSIDPPRPKNP------SYKPDEIIVDG--HRSYFedTQRTRPQSTKTRVQSVGGSVHSSSANIPRTS--- 307
Cdd:PRK10263  702 QFAQTQQQRYSGEQPAGANPfslddfEFSPMKALLDDgpHEPLF--TPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPqyq 779

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392890267  308 QPAAVVSPPQQrtfVRPNEQFQQPRVVRPQPQQQlTRPAPARPQTRRPVPQPQQATRPAPrPVAPK 373
Cdd:PRK10263  780 QPQQPVAPQPQ---YQQPQQPVAPQPQYQQPQQP-VAPQPQYQQPQQPVAPQPQYQQPQQ-PVAPQ 840
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 306-396 2.51e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 40.22  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 306 TSQPAAVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQltrPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQ---PAP 382
Cdd:COG3266  264 ASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAV---ALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAApaaPAP 340

                         90
                 ....*....|....*
gi 392890267 383 -VTAPVAKPRTASAK 396
Cdd:COG3266  341 eAAAAAAAPAAPAVA 355
 
Name Accession Description Interval E-value
DB pfam01682
DB module; This domain has no known function. It is found in several C. elegans proteins. The ...
 400-502 1.07e-22

DB module; This domain has no known function. It is found in several C. elegans proteins. The domain contains 12 conserved cysteines that probably form six disulphide bridges. This domain is found associated with ig pfam00047 and fn3 pfam00041 domains, as well as in some lipases pfam00657.


Pssm-ID: 460293  Cd Length: 98  Bit Score: 92.59  E-value: 1.07e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  400 CCKGRKVHNSCERICSFDVLSKKVLtgMFLGTDACPQHHGlDLMQCAADNDDHTACCIDREVDktsagKKCLGFC---NM 476
Cdd:pfam01682   1 CCSEKGVPSSCLSLCSYDAINKDAL--LLFLAPRCPPELP-KILRCAADGRDHTPCCKRRGVP-----DKCLGFCpgnVD 72

                          90       100
                  ....*....|....*....|....*.
gi 392890267  477 KPGITFQADVSMLPCWSVLNDIKQCF 502
Cdd:pfam01682  73 LLSDVTPLDKSYLFCLSYFENIKQCF 98
PRK12757 PRK12757
cell division protein FtsN; Provisional
 315-400 5.70e-07

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 50.81  E-value: 5.70e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 315 PPQQRTFVRPNEQFQ-QPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPrPVAPKSHLAQQPAPVTAPVAKPRTA 393
Cdd:PRK12757  98 QPTQLSEVPYNEQTPqVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQ-PQTPAPVRTQPAAPVTQAVEAPKVE 176

                         90
                 ....*....|...
gi 392890267 394 SAK------FLQC 400
Cdd:PRK12757 177 AEKekeqrwMVQC 189
PHA03247 PHA03247
large tegument protein UL36; Provisional
 304-404 5.92e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.17  E-value: 5.92e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  304 PRTSQPAAVVSPPQQR----TFVRPNEQFQQPRvvrPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQ 379
Cdd:PHA03247 2870 SPAAKPAAPARPPVRRlarpAVSRSTESFALPP---DQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946

                          90       100
                  ....*....|....*....|....*
gi 392890267  380 PAPVTAPVAKPRTASAKFLQCCKGR 404
Cdd:PHA03247 2947 TDPAGAGEPSGAVPQPWLGALVPGR 2971
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
281-393 8.49e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.33  E-value: 8.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 281 RPQSTKTRVQSVGGSVHSSSANIPRTSQPAAVVSPPQQRTFVRPNEQFQQPRVVRPQP-----QQQLTRPAPARPQTRRP 355
Cdd:PRK12323 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlaaarQASARGPGGAPAPAPAP 454

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 392890267 356 VPQPQQATRPAPRPVAPKSHLAQQPAPVTAPVAKPRTA 393
Cdd:PRK12323 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 308-420 1.36e-05

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 48.16  E-value: 1.36e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  308 QPAAVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQ----PQQATRPAPRPVAPKSHLaQQPAPV 383
Cdd:PRK10263  758 PVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQqpvaPQPQYQQPQQPVAPQPQY-QQPQQP 836

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 392890267  384 TAPVAKPRTASAKFLQCCKGRKVHNSCERICSFDVLS 420
Cdd:PRK10263  837 VAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLT 873
PRK10927 PRK10927
cell division protein FtsN;
317-396 1.49e-05

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 46.98  E-value: 1.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 317 QQRTFVRPNEQFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATR---------PAPRPVAPKshlAQQPAPVTAPV 387
Cdd:PRK10927 157 RQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQqpyqdllqtPAHTTAQSK---PQQAAPVTRAA 233


                 ....*....
gi 392890267 388 AKPRTASAK 396
Cdd:PRK10927 234 DAPKPTAEK 242
PHA03247 PHA03247
large tegument protein UL36; Provisional
 234-395 3.41e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 3.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  234 PPPPARFIPtlkslysiDPPrPKNPSYKPDEIiVDGHRSYFEDTQRTRPQSTKTRVQSVGGSVhsssanipRTSQPAAVV 313
Cdd:PHA03247 2616 PLPPDTHAP--------DPP-PPSPSPAANEP-DPHPPPTVPPPERPRDDPAPGRVSRPRRAR--------RLGRAAQAS 2677

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  314 SPPQqrtfvRPneqfqQPRVVRPqPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQPAPVTAPVAKPRTA 393
Cdd:PHA03247 2678 SPPQ-----RP-----RRRAARP-TVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPA 2746


                  ..
gi 392890267  394 SA 395
Cdd:PHA03247 2747 GP 2748
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 305-395 1.13e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.98  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 305 RTSQPAAVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQLTRPAPARPQtrrPVPQPQQATRPAPRPVAPKSHLAQQPAPVT 384
Cdd:PRK07764 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ---PAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460

                         90
                 ....*....|.
gi 392890267 385 APVAKPRTASA 395
Cdd:PRK07764 461 APSAQPAPAPA 471
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 305-395 1.35e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 44.72  E-value: 1.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 305 RTSQPAaVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQltrPAPARPQTRRPVPQPQQATRPAPRP-VAPKSHLAQQP--- 380
Cdd:PHA03269  38 QKPDPA-PAPHQAASRAPDPAVAPTSAASRKPDLAQA---PTPAASEKFDPAPAPHQAASRAPDPaVAPQLAAAPKPdaa 113

                         90
                 ....*....|....*.
gi 392890267 381 -APVTAPVAKPRTASA 395
Cdd:PHA03269 114 eAFTSAAQAHEAPADA 129
PRK11633 PRK11633
cell division protein DedD; Provisional
 303-393 1.99e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 42.68  E-value: 1.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 303 IPRTSQPAAVVSPPQQRTFVRPNE---QFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPkshlaQQ 379
Cdd:PRK11633  56 MPAATQALPTQPPEGAAEAVRAGDaaaPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAP-----PA 130

                         90
                 ....*....|....
gi 392890267 380 PAPVTAPVAKPRTA 393
Cdd:PRK11633 131 PKPEPKPVVEEKAA 144
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 301-383 3.48e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.49  E-value: 3.48e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  301 ANIPRTSQPAAVVSPPQQRTFVRPNEQFQQPRVVR-PQPQQQLTRPAPARPQTRRPV-----PQPQQATRPAPRPVAPKS 374
Cdd:pfam09770 207 AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQqQQQPQQQPQQPQQHPGQGHPVtilqrPQSPQPDPAQPSIQPQAQ 286


                  ....*....
gi 392890267  375 HLAQQPAPV 383
Cdd:pfam09770 287 QFHQQPPPV 295
PRK13335 PRK13335
superantigen-like protein SSL3; Reviewed;
305-399 4.12e-04

superantigen-like protein SSL3; Reviewed;


Pssm-ID: 139494 [Multi-domain]  Cd Length: 356  Bit Score: 42.81  E-value: 4.12e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 305 RTSQPAAVVSPPQQRTFVRPNEQFQQPRvvrPQPQQQLTRPAPARPQTRRPVPQPqQATRPAPRPVAPKSHLAQQPAPVT 384
Cdd:PRK13335  72 RTPKLEKAPNTNEEKTSASKIEKISQPK---QEEQKSLNISATPAPKQEQSQTTT-ESTTPKTKVTTPPSTNTPQPMQST 147

                         90
                 ....*....|....*
gi 392890267 385 APvAKPRTASAKFLQ 399
Cdd:PRK13335 148 KS-DTPQSPTIKQAQ 161
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 304-381 5.28e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 5.28e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 304 PRTSQPAAVVSPPQQRTFVRPNEQFQQPRVVRPQPQ---QQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQP 380
Cdd:PRK07764 426 AAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAApsaQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505


                 .
gi 392890267 381 A 381
Cdd:PRK07764 506 A 506
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 281-380 5.79e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 42.72  E-value: 5.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  281 RPQSTKtRVQSVGGSVHSSSANIPRTSQPAAVVSPPQQRTFVRPNEQFQQPRVVRPQ--PQQQLTRP--APARPQTRRPV 356
Cdd:pfam09770 204 RAQAKK-PAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQghPVTILQRPqsPQPDPAQPSIQ 282

                          90       100
                  ....*....|....*....|....
gi 392890267  357 PQPQQATRPAPRPVAPKSHLAQQP 380
Cdd:pfam09770 283 PQAQQFHQQPPPVPVQPTQILQNP 306
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 305-405 1.23e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 41.65  E-value: 1.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 305 RTSQPAAVVSPPQQRtfvrpneqfqqprvVRPQPQqqltrPAPARPQTRRPVPQPQQATRPAPrpvapkshlaqqPAPVT 384
Cdd:PRK14965 390 GAPTPAAPAAPPPAA--------------APPVPP-----AAPARPAAARPAPAPAPPAAAAP------------PARSA 438

                         90       100
                 ....*....|....*....|...
gi 392890267 385 APVAKPRTAS--AKFLQCCKGRK 405
Cdd:PRK14965 439 DPAAAASAGDrwRAFVAFVKGKK 461
flhF PRK06995
flagellar biosynthesis protein FlhF;
304-396 1.51e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 41.11  E-value: 1.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 304 PRTSQPAAVVSPPQQRTFVRPNEQFQQPrVVRPQPQQQLTRPAPARPQtRRPVPQPQQATRPAPRPVAPKSHLAQQPAPV 383
Cdd:PRK06995  74 SRPAAPAAEPAPWLVEHAKRLTAQREQL-VARAAAPAAPEAQAPAAPA-ERAAAENAARRLARAAAAAPRPRVPADAAAA 151

                         90
                 ....*....|...
gi 392890267 384 TAPVAKPRTASAK 396
Cdd:PRK06995 152 VADAVKARIERIV 164
PRK10927 PRK10927
cell division protein FtsN;
314-393 1.73e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 40.43  E-value: 1.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 314 SPPQQRTFVRPNEQFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVA---PKSHLAQQPAPVTAPVAKP 390
Cdd:PRK10927 145 TPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPAStqqPYQDLLQTPAHTTAQSKPQ 224


                 ...
gi 392890267 391 RTA 393
Cdd:PRK10927 225 QAA 227
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 301-432 1.76e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.95  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  301 ANIPRTSQPAAvvspPQQRTFVRPNEQFQQPrvvrPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQP 380
Cdd:TIGR01628 420 SMMPTPMGPGG----PLRPNGLAPMNAVRAP----SRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNK 491

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 392890267  381 APVTAPVAKPRTASAKFLqcckGRKVHNSCERICSfdVLSKKVlTGMFLGTD 432
Cdd:TIGR01628 492 KLAQVLASATPQMQKQVL----GERLFPLVEAIEP--ALAAKI-TGMLLEMD 536
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 239-373 2.08e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.84  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  239 RFIPTLKSLYSIDPPRPKNP------SYKPDEIIVDG--HRSYFedTQRTRPQSTKTRVQSVGGSVHSSSANIPRTS--- 307
Cdd:PRK10263  702 QFAQTQQQRYSGEQPAGANPfslddfEFSPMKALLDDgpHEPLF--TPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPqyq 779

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392890267  308 QPAAVVSPPQQrtfVRPNEQFQQPRVVRPQPQQQlTRPAPARPQTRRPVPQPQQATRPAPrPVAPK 373
Cdd:PRK10263  780 QPQQPVAPQPQ---YQQPQQPVAPQPQYQQPQQP-VAPQPQYQQPQQPVAPQPQYQQPQQ-PVAPQ 840
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 311-390 2.43e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 40.56  E-value: 2.43e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 311 AVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQPAPVTAPVAKP 390
Cdd:PRK14950 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIP 437
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 306-396 2.51e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 40.22  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 306 TSQPAAVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQltrPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQ---PAP 382
Cdd:COG3266  264 ASAPATTSLGEQQEVSLPPAVAAQPAAAAAAQPSAV---ALPAAPAAAAAAAAPAEAAAPQPTAAKPVVTETAApaaPAP 340

                         90
                 ....*....|....*
gi 392890267 383 -VTAPVAKPRTASAK 396
Cdd:COG3266  341 eAAAAAAAPAAPAVA 355
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 304-395 2.94e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 2.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 304 PRTSQPAAVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQ---QP 380
Cdd:PRK07764 405 APAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAApapAP 484

                         90
                 ....*....|....*
gi 392890267 381 APVTAPVAKPRTASA 395
Cdd:PRK07764 485 PAAPAPAAAPAAPAA 499
PRK12757 PRK12757
cell division protein FtsN; Provisional
 306-373 3.23e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 39.26  E-value: 3.23e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392890267 306 TSQPAAVVSPPQQRTfvrpneqfQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPK 373
Cdd:PRK12757 120 QIQQQAQQQQPPATT--------AQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVEAEK 179
PRK11633 PRK11633
cell division protein DedD; Provisional
 308-383 3.74e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 38.83  E-value: 3.74e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392890267 308 QPAAVVSPPQQRTFVRPNEQfqqPRVVRPQPQQQlTRPAPARPQTRRPVPQPQQATRPAPRPvAPKSHLAQQPAPV 383
Cdd:PRK11633  76 RAGDAAAPSLDPATVAPPNT---PVEPEPAPVEP-PKPKPVEKPKPKPKPQQKVEAPPAPKP-EPKPVVEEKAAPT 146
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 304-390 4.04e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 39.79  E-value: 4.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 304 PRTSQPAAVVSPPQQRTfVRPNEQFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPqqatRPAPRPVAPKSHLAQQPAPV 383
Cdd:PRK14950 366 PQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP----VPHTPESAPKLTRAAIPVDE 440


                 ....*..
gi 392890267 384 TAPVAKP 390
Cdd:PRK14950 441 KPKYTPP 447
PRK05733 PRK05733
single-stranded DNA-binding protein; Provisional
 335-382 4.07e-03

single-stranded DNA-binding protein; Provisional


Pssm-ID: 235585 [Multi-domain]  Cd Length: 172  Bit Score: 38.37  E-value: 4.07e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 392890267 335 RPQPQQQLTR------PAPARPQTRRPVPQPQQATRPAPRPVAPkshlaqQPAP 382
Cdd:PRK05733 114 RPQGDDQGGQgggnynQSAPRQQAQRPQQAAQQQSRPAPQQPAP------QPAA 161
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
307-395 4.35e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.86  E-value: 4.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 307 SQPAAVVSPPQqrtfVRPNEQFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVA-----------PKSH 375
Cdd:PRK12323 372 AGPATAAAAPV----AQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlaaarqasargPGGA 447

                         90       100
                 ....*....|....*....|
gi 392890267 376 LAQQPAPVTAPVAKPRTASA 395
Cdd:PRK12323 448 PAPAPAPAAAPAAAARPAAA 467
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 309-395 4.56e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.85  E-value: 4.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 309 PAAVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPV-APKSHLAQQPAPVTAPV 387
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLlAARQQLQRAQGATKAKK 440


                 ....*...
gi 392890267 388 AKPRTASA 395
Cdd:PRK07994 441 SEPAAASR 448
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 304-395 5.08e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.70  E-value: 5.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 304 PRTSQPAAVVSPPqqRTFVRPNeqfQQPRVVRPQPQQQLTR-PAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQPAP 382
Cdd:PRK14951 366 PAAAAEAAAPAEK--KTPARPE---AAAPAAAPVAQAAAAPaPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA 440

                         90
                 ....*....|...
gi 392890267 383 VTAPVAKPRTASA 395
Cdd:PRK14951 441 APAAVALAPAPPA 453
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 304-390 5.80e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.46  E-value: 5.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 304 PRTSQPAAVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQLTRPAPARPQtrrpvPQPQQATRPAPRPVAPKSHLAQQPAPV 383
Cdd:PRK07994 395 QAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE-----PAAASRARPVNSALERLASVRPAPSAL 469


                 ....*..
gi 392890267 384 TAPVAKP 390
Cdd:PRK07994 470 EKAPAKK 476
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 234-396 6.10e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.30  E-value: 6.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  234 PPPPARFIPTLKSLYSIDPPRPKNPSYKPDEIIVDGHRSYFEDTQRTRPQSTKTRVQSVGGSVHSSSANIPRTS--QPAA 311
Cdd:PRK10263  381 PQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQStfAPQS 460

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  312 VVSPPQQRTF-VRPNEQFQQPRVVRPQ----PQQQLTRPAPARP--------QTRR------------PVPQPQQATRPA 366
Cdd:PRK10263  461 TYQTEQTYQQpAAQEPLYQQPQPVEQQpvvePEPVVEETKPARPplyyfeevEEKRarereqlaawyqPIPEPVKEPEPI 540

                         170       180       190
                  ....*....|....*....|....*....|
gi 392890267  367 pRPVAPKSHLAQQPAPVTAPVAKPRTASAK 396
Cdd:PRK10263  541 -KSSLKAPSVAAVPPVEAAAAVSPLASGVK 569
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 322-383 6.81e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.30  E-value: 6.81e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392890267  322 VRPNEQFQQPRVVRPQPQ--QQLTRPAPARPQTRRPVPQPQQATRPaPRPVAPKSHLAQQPAPV 383
Cdd:PRK10263  749 VEPVQQPQQPVAPQQQYQqpQQPVAPQPQYQQPQQPVAPQPQYQQP-QQPVAPQPQYQQPQQPV 811
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 244-372 6.93e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 39.30  E-value: 6.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267  244 LKSLYSIDPPRPK-NPSYKPDEIIVDGHRSYFEDTQRTRPQSTKTRVQSVGGSVHSSSANIPRTSQPAAVVSPPQQRTFV 322
Cdd:PRK10263  732 MKALLDDGPHEPLfTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPV 811

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 392890267  323 RPNEQFQQPRV-VRPQPQ-QQLTRPAPARPQTR--RPVPQPQQATRPAPRPVAP 372
Cdd:PRK10263  812 APQPQYQQPQQpVAPQPQyQQPQQPVAPQPQDTllHPLLMRNGDSRPLHKPTTP 865
ZipA COG3115
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ...
 271-395 7.75e-03

Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442349 [Multi-domain]  Cd Length: 298  Bit Score: 38.52  E-value: 7.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 271 RSYFEDTQRTRPQstkTRVQSVGGSVHSSSANIPRTSQPAAVVSPPQQRTfvRPNEQFQQPRVVRPQPQQQLTR-PAPAR 349
Cdd:COG3115   31 RSSFRDKPSKRDV---LLDDDGIGEVRVVAAEAPERVEPEASFDAEDEVR--EPDQEEVDPLLDDEADIEAAPAePVRWA 105

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 392890267 350 PQTRRPVPQPQQATRPAPRPVAPKShlAQQPAPVTAPVAKPRTASA 395
Cdd:COG3115  106 GTAAAVEPAPEQEAYEEAGPAGESA--EQEDAPAEEPEAEAPAEEA 149
flhF PRK06995
flagellar biosynthesis protein FlhF;
301-404 8.03e-03

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 38.79  E-value: 8.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 301 ANIPRTSQPAAVVSPPQQRTFVRPNEQFQQPRVVRPQPQQQLTRPAPARPQTRRPVPQPQQATRPAPRPVAPKSHLAQQP 380
Cdd:PRK06995  56 AAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPEAQAPAAPAERAAAENAARRLARA 135

                         90       100
                 ....*....|....*....|....
gi 392890267 381 APVTAPVAKPRTASAKFLQCCKGR 404
Cdd:PRK06995 136 AAAAPRPRVPADAAAAVADAVKAR 159
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 308-395 8.95e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 38.77  E-value: 8.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392890267 308 QPAAVVSPPQQRtfvrpneqfQQPRVVRPQPQQQLTRPAPARPqTRRPVPQPQQATRPAPrpvapkshlaQQPAPVTAPV 387
Cdd:PRK14954 381 APSPAGSPDVKK---------KAPEPDLPQPDRHPGPAKPEAP-GARPAELPSPASAPTP----------EQQPPVARSA 440


                 ....*...
gi 392890267 388 AKPRTASA 395
Cdd:PRK14954 441 PLPPSPQA 448
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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