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Conserved domains on  [gi|392894612|ref|NP_001254891|]
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J domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14297 super family cl32988
molecular chaperone DnaJ;
17-109 4.77e-33

molecular chaperone DnaJ;


The actual alignment was detected with superfamily member PRK14297:

Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 126.82  E-value: 4.77e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLD------- 89
Cdd:PRK14297   5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAggfgsgg 84

                         90       100
                 ....*....|....*....|
gi 392894612  90 FEGFDVSEMGGVGRVFGALF 109
Cdd:PRK14297  85 FGGFDFSDMGGFGDIFDSFF 104
PLN02281 super family cl31857
chlorophyllide a oxygenase
 280-353 3.62e-03

chlorophyllide a oxygenase


The actual alignment was detected with superfamily member PLN02281:

Pssm-ID: 177920 [Multi-domain]  Cd Length: 536  Bit Score: 39.33  E-value: 3.62e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392894612 280 ITFLPVEPSAVEQLNEIQDTEKSISIIKKEMLDFQREFTEAKRKYDEAVAKLKvqddTILKALAHREELYNEVL 353
Cdd:PLN02281 100 LTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVS----TALDKLAHMEELVNDRL 169
 
Name Accession Description Interval E-value
PRK14297 PRK14297
molecular chaperone DnaJ;
17-109 4.77e-33

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 126.82  E-value: 4.77e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLD------- 89
Cdd:PRK14297   5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAggfgsgg 84

                         90       100
                 ....*....|....*....|
gi 392894612  90 FEGFDVSEMGGVGRVFGALF 109
Cdd:PRK14297  85 FGGFDFSDMGGFGDIFDSFF 104
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 17-109 2.02e-32

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 124.64  E-value: 2.02e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612   17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPnDAHAQEEFKKVSIAYSVLSDPNKRRQYDV-------SGPSENQLD 89
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQfghagfnGGGGGGGGG 79

                          90       100
                  ....*....|....*....|
gi 392894612   90 FEGFDVSEMGGVGRVFGALF 109
Cdd:TIGR02349  80 FNGFDIGFFGDFGDIFGDFF 99
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 17-79 2.63e-32

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 115.65  E-value: 2.63e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392894612   17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYD 79
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 17-82 2.52e-31

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 115.96  E-value: 2.52e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG 82
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYDRFG 66
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 17-71 5.76e-24

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 93.38  E-value: 5.76e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSD 71
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
16-74 1.41e-22

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 89.60  E-value: 1.41e-22
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612    16 MDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAH-AQEEFKKVSIAYSVLSDPNK 74
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEeAEEKFKEINEAYEVLSDPEK 60
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
17-95 5.62e-21

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 93.73  E-value: 5.62e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG----PSENQLDFEG 92
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN-KAPDAAEIFAEINEAYEVLSNPEKRANYDKYGhdgvDGEGGFGFDA 84


                 ...
gi 392894612  93 FDV 95
Cdd:NF037946  85 FDV 87
PLN02281 PLN02281
chlorophyllide a oxygenase
 280-353 3.62e-03

chlorophyllide a oxygenase


Pssm-ID: 177920 [Multi-domain]  Cd Length: 536  Bit Score: 39.33  E-value: 3.62e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392894612 280 ITFLPVEPSAVEQLNEIQDTEKSISIIKKEMLDFQREFTEAKRKYDEAVAKLKvqddTILKALAHREELYNEVL 353
Cdd:PLN02281 100 LTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVS----TALDKLAHMEELVNDRL 169
 
Name Accession Description Interval E-value
PRK14297 PRK14297
molecular chaperone DnaJ;
17-109 4.77e-33

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 126.82  E-value: 4.77e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLD------- 89
Cdd:PRK14297   5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAggfgsgg 84

                         90       100
                 ....*....|....*....|
gi 392894612  90 FEGFDVSEMGGVGRVFGALF 109
Cdd:PRK14297  85 FGGFDFSDMGGFGDIFDSFF 104
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 14-110 8.30e-33

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 126.03  E-value: 8.30e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  14 SEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDvsgpsenQLDFEGF 93
Cdd:PRK10767   2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYD-------QYGHAAF 74

                         90       100
                 ....*....|....*....|....
gi 392894612  94 DVSEMGG-------VGRVFGALFS 110
Cdd:PRK10767  75 EQGGGGGgfgggggFGDIFGDIFG 98
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 17-109 2.02e-32

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 124.64  E-value: 2.02e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612   17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPnDAHAQEEFKKVSIAYSVLSDPNKRRQYDV-------SGPSENQLD 89
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQfghagfnGGGGGGGGG 79

                          90       100
                  ....*....|....*....|
gi 392894612   90 FEGFDVSEMGGVGRVFGALF 109
Cdd:TIGR02349  80 FNGFDIGFFGDFGDIFGDFF 99
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 17-79 2.63e-32

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 115.65  E-value: 2.63e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392894612   17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYD 79
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 17-82 2.52e-31

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 115.96  E-value: 2.52e-31
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG 82
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYDRFG 66
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 17-109 2.91e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 113.61  E-value: 2.91e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAhAQEEFKKVSIAYSVLSDPNKRRQYDVSG-PSENQLDFEGFDV 95
Cdd:PRK14278   4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEE-AQEKFKEISVAYEVLSDPEKRRIVDLGGdPLESAGGGGGGFG 82

                         90
                 ....*....|....
gi 392894612  96 SEMGGVGRVFGALF 109
Cdd:PRK14278  83 GGFGGLGDVFEAFF 96
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 17-110 8.23e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 112.59  E-value: 8.23e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS------ENQLDF 90
Cdd:PRK14277   6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAafdpggFGQGGF 85

                         90       100
                 ....*....|....*....|....*.
gi 392894612  91 ------EGFDVSEMGGVGRVFGALFS 110
Cdd:PRK14277  86 gqggfgGGGFDFDFGGFGDIFEDIFG 111
PRK14279 PRK14279
molecular chaperone DnaJ;
10-113 5.16e-27

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 110.59  E-value: 5.16e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  10 QPKVSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVS-------- 81
Cdd:PRK14279   3 QREWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETrrlfaggg 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 392894612  82 ------------GPSENQLDFEGFDVSEM---------GGVGRVFGALFSKLG 113
Cdd:PRK14279  83 fggrrfdggggfGGFGTGGDGAEFNLNDLfdaagrgggGGIGDLFGGLFNRGG 135
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 17-77 5.80e-27

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 101.61  E-value: 5.80e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQ 77
Cdd:COG5407    1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDPKAEERFKEINEAYELLSDAEKRAR 61
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 17-109 1.08e-26

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 109.55  E-value: 1.08e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS--ENQLDFEG-F 93
Cdd:PRK14298   6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAgiDNQYSAEDiF 84

                         90
                 ....*....|....*.
gi 392894612  94 DVSEMGGVGRVFGALF 109
Cdd:PRK14298  85 RGADFGGFGDIFEMFF 100
PRK14295 PRK14295
molecular chaperone DnaJ;
15-113 4.20e-26

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 108.01  E-value: 4.20e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  15 EMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVS-----------GP 83
Cdd:PRK14295   8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEArslfgnggfrpGP 87

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 392894612  84 SENQLDFEGFDVSEM--------------GGVGRVFGALFSKLG 113
Cdd:PRK14295  88 GGGGGGGFNFDLGDLfgggaqggggagggGGLGDVFGGLFNRGG 131
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 14-109 1.11e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 106.36  E-value: 1.11e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  14 SEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS--ENQLDFE 91
Cdd:PRK14301   2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAgvNGNGGFG 81

                         90       100
                 ....*....|....*....|
gi 392894612  92 GFDVSE--MGGVGRVFGALF 109
Cdd:PRK14301  82 GFSSAEdiFSHFSDIFGDLF 101
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 16-113 1.39e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 106.47  E-value: 1.39e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  16 MDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYD-------------VSG 82
Cdd:PRK14284   1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDrygkdgpfagaggFGG 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 392894612  83 PSENQLD-----FEGFDVSEMGGVGRVFGALFSKLG 113
Cdd:PRK14284  81 AGMGNMEdalrtFMGAFGGEFGGGGSFFEGLFGGLG 116
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 16-85 1.46e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 106.13  E-value: 1.46e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  16 MDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPnDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSE 85
Cdd:PRK14292   2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 17-109 8.48e-25

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 103.69  E-value: 8.48e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS--ENQ--LDFEG 92
Cdd:PRK14294   5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEglSGTgfSGFSG 84

                         90
                 ....*....|....*..
gi 392894612  93 FDvSEMGGVGRVFGALF 109
Cdd:PRK14294  85 FD-DIFSSFGDIFEDFF 100
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 15-109 2.58e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 102.86  E-value: 2.58e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  15 EMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDF---- 90
Cdd:PRK14276   3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFggga 81

                         90       100
                 ....*....|....*....|...
gi 392894612  91 ---EGFD-VSEMGGVGRVFGALF 109
Cdd:PRK14276  82 ggfGGFDgSGGFGGFEDIFSSFF 104
PRK14289 PRK14289
molecular chaperone DnaJ;
17-113 3.24e-24

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 102.60  E-value: 3.24e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYD------VSGPSENQlDF 90
Cdd:PRK14289   6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDqfghagVGGAAGGG-GF 84

                         90       100
                 ....*....|....*....|...
gi 392894612  91 EGFDVSeMGGVGRVFGALFSKLG 113
Cdd:PRK14289  85 SGEGMS-MEDIFSMFGDIFGGHG 106
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 17-113 3.85e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 102.16  E-value: 3.85e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNdAHAQEEFKKVSIAYSVLSDPNKRRQYD------VSGPSENQLDF 90
Cdd:PRK14291   4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDqfghaaFSGSGQQQQGQ 82

                         90       100
                 ....*....|....*....|...
gi 392894612  91 EGFDVSEMGGVGRVFGALFSKLG 113
Cdd:PRK14291  83 EGFSDFGGGNIEDILEDVFDIFG 105
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 17-71 5.76e-24

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 93.38  E-value: 5.76e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSD 71
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 17-107 1.70e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 100.65  E-value: 1.70e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDvsgpsenQLDFEGFDVS 96
Cdd:PRK14281   4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYD-------QFGHAGVGSS 76

                         90
                 ....*....|.
gi 392894612  97 EMGGVGRVFGA 107
Cdd:PRK14281  77 AASGGGPGYGG 87
PRK14293 PRK14293
molecular chaperone DnaJ;
17-113 2.30e-23

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 100.06  E-value: 2.30e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYD------VSGPSenqldf 90
Cdd:PRK14293   4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVLSDPETRARYDqfgeagVSGAA------ 76

                         90       100
                 ....*....|....*....|....
gi 392894612  91 eGF-DVSEMGGVGRVFGALFSKLG 113
Cdd:PRK14293  77 -GFpDMGDMGGFADIFETFFSGFG 99
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 13-109 3.38e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 99.29  E-value: 3.38e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  13 VSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDFEG 92
Cdd:PRK14286   1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGG 80

                         90       100
                 ....*....|....*....|....
gi 392894612  93 F------DVSEM-GGVGRVFGALF 109
Cdd:PRK14286  81 FgqgaytDFSDIfGDFGDIFGDFF 104
PRK14280 PRK14280
molecular chaperone DnaJ;
13-109 3.47e-23

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 99.41  E-value: 3.47e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  13 VSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDFEG 92
Cdd:PRK14280   1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDIN-KEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGG 79

                         90       100
                 ....*....|....*....|..
gi 392894612  93 F-----DVSEMGGVGRVFGALF 109
Cdd:PRK14280  80 GgfgggDFGGGFGFEDIFSSFF 101
DnaJ smart00271
DnaJ molecular chaperone homology domain;
16-74 1.41e-22

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 89.60  E-value: 1.41e-22
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612    16 MDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAH-AQEEFKKVSIAYSVLSDPNK 74
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEeAEEKFKEINEAYEVLSDPEK 60
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 17-113 6.02e-22

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 94.62  E-value: 6.02e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQL-------- 88
Cdd:PRK14299   5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAgwqgpppg 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 392894612  89 -----DFEGFDVSEM-----------GGVGRvFGALFSKLG 113
Cdd:PRK14299  84 ppgggDFSGFNVGDFsdffqqlfggrGGFGG-FGDLFGSVG 123
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 17-109 1.66e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 94.61  E-value: 1.66e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNP-NDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDFEGF-- 93
Cdd:PRK14290   4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPgNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFnw 83

                         90
                 ....*....|....*..
gi 392894612  94 -DVSEMGGVGRVFGALF 109
Cdd:PRK14290  84 dNFTHFSDINDIFNQIF 100
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 17-113 5.22e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 93.35  E-value: 5.22e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYD------VSGPSE----N 86
Cdd:PRK14283   6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVLSDDEKRQRYDqfghagMDGFSQedifN 84

                         90       100
                 ....*....|....*....|....*..
gi 392894612  87 QLDFEgfDVseMGGVGRVFGALFSKLG 113
Cdd:PRK14283  85 NINFE--DI--FQGFGFGIGNIFDMFG 107
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
17-95 5.62e-21

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 93.73  E-value: 5.62e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG----PSENQLDFEG 92
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN-KAPDAAEIFAEINEAYEVLSNPEKRANYDKYGhdgvDGEGGFGFDA 84


                 ...
gi 392894612  93 FDV 95
Cdd:NF037946  85 FDV 87
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
17-81 2.36e-20

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 84.77  E-value: 2.36e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPND-AHAQEEFKKVSIAYSVLSDPNKRRQYDVS 81
Cdd:COG2214    6 DHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELkALAEELFQRLNEAYEVLSDPERRAEYDRE 71
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 17-105 8.65e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 89.67  E-value: 8.65e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPS--ENQLDFEGFD 94
Cdd:PRK14285   4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTafEGGGGFEGFS 83

                         90
                 ....*....|.
gi 392894612  95 vSEMGGVGRVF 105
Cdd:PRK14285  84 -GGFSGFSDIF 93
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 13-109 3.57e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 87.76  E-value: 3.57e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  13 VSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSGPSENQLDFEG 92
Cdd:PRK14287   1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVN-KAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG 79

                         90
                 ....*....|....*..
gi 392894612  93 FDVSEMGGVGRVFGALF 109
Cdd:PRK14287  80 GGAGDFGGFSDIFDMFF 96
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 17-112 4.96e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 87.31  E-value: 4.96e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYD---------VSGPSENQ 87
Cdd:PRK14296   5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPDAHDKMVEINEAADVLLDKDKRKQYDqfghaafdgSSGFSSNF 83

                         90       100
                 ....*....|....*....|....*.
gi 392894612  88 LDFEGFdVSEMGGVGRV-FGALFSKL 112
Cdd:PRK14296  84 GDFEDL-FSNMGSSGFSsFTNIFSDF 108
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 17-82 3.20e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 85.23  E-value: 3.20e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNP-NDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG 82
Cdd:PRK14282   5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPeNRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 18-82 8.47e-17

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 81.41  E-value: 8.47e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 392894612  18 FYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNdahaQEEFKKVSIAYSVLSDPNKRRQYDVSG 82
Cdd:PTZ00037  30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYG 90
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 17-82 3.64e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 76.21  E-value: 3.64e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDrNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG 82
Cdd:PRK14300   4 DYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68
PRK14288 PRK14288
molecular chaperone DnaJ;
15-93 4.53e-15

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 75.88  E-value: 4.53e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  15 EMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYDVSG------PSENQL 88
Cdd:PRK14288   2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGkkglnqAGASQS 81


                 ....*
gi 392894612  89 DFEGF 93
Cdd:PRK14288  82 DFSDF 86
PRK10266 PRK10266
curved DNA-binding protein;
17-79 6.34e-14

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 71.78  E-value: 6.34e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNpNDAHAQEEFKKVSIAYSVLSDPNKRRQYD 79
Cdd:PRK10266   5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDEQRRAEYD 66
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
14-83 2.73e-10

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 55.96  E-value: 2.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  14 SEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRnpndaHAQ---EEFKKVSI--------AYSVLSDPnkrRQYDVSG 82
Cdd:COG1076    2 QLDDAFELLGLPPDADDAELKRAYRKLQREHHPDR-----LAAglpEEEQRLALqkaaaineAYETLKDP---RGIDLAA 73


                 .
gi 392894612  83 P 83
Cdd:COG1076   74 P 74
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 17-79 3.35e-08

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 54.65  E-value: 3.35e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 392894612  17 DFYQLLGVEKM---ASEAEIKSAYRKLALKYHPDRNPNDAH--AQEEFKKVSIAYSVLSDPNKRRQYD 79
Cdd:COG5269   44 DLYALLGLSKYrtkAIPPQILKAHKKKVYKYHPDKTAAGGNkgCDEFFKLIQKAREVLGDRKLRLQYD 111
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 13-82 2.64e-06

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 49.40  E-value: 2.64e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612   13 VSEMDFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAhAQEEFKKVSIAYSVLSDPNKRRQYDVSG 82
Cdd:PTZ00341  570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNE-GFHKFKKINEAYQILGDIDKKKMYNKFG 638
djlA PRK09430
co-chaperone DjlA;
17-47 4.10e-06

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 47.88  E-value: 4.10e-06
                         10        20        30
                 ....*....|....*....|....*....|.
gi 392894612  17 DFYQLLGVEKMASEAEIKSAYRKLALKYHPD 47
Cdd:PRK09430 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231
PHA03102 PHA03102
Small T antigen; Reviewed
 20-110 1.90e-04

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 41.58  E-value: 1.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392894612  20 QLLGVEKMA--SEAEIKSAYRKLALKYHPDRNPNdahaQEEFKKVSIAYSVLsdpnkrRQYDvsgPSENQLDFEGFDVSE 97
Cdd:PHA03102   9 DLLGLPRSAwgNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKF------RESV---KSLRDLDGEEDSSSE 75

                         90
                 ....*....|....
gi 392894612  98 MGGVG-RVFGALFS 110
Cdd:PHA03102  76 EEDVPsGYVGATFG 89
hscB PRK03578
Fe-S protein assembly co-chaperone HscB;
16-78 3.78e-04

Fe-S protein assembly co-chaperone HscB;


Pssm-ID: 235133 [Multi-domain]  Cd Length: 176  Bit Score: 40.77  E-value: 3.78e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 392894612  16 MDFYQLLGVEKM--ASEAEIKSAYRKLALKYHPDRNpndAHAQEEFKKVSI--------AYSVLSDPNKRRQY 78
Cdd:PRK03578   6 DDHFSLFGLPARfaLDEAALDAAYRTVQAQVHPDRF---AAAGDAEKRVAMqwatraneAYQTLRDPLKRARY 75
PLN02281 PLN02281
chlorophyllide a oxygenase
 280-353 3.62e-03

chlorophyllide a oxygenase


Pssm-ID: 177920 [Multi-domain]  Cd Length: 536  Bit Score: 39.33  E-value: 3.62e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 392894612 280 ITFLPVEPSAVEQLNEIQDTEKSISIIKKEMLDFQREFTEAKRKYDEAVAKLKvqddTILKALAHREELYNEVL 353
Cdd:PLN02281 100 LTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVS----TALDKLAHMEELVNDRL 169
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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