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Conserved domains on  [gi|453232021|ref|NP_001255028|]
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Vacuolar protein sorting-associated protein 53 homolog [Caenorhabditis elegans]

Protein Classification

Vps53-like N-terminal domain-containing protein( domain architecture ID 140795)

Vps53-like N-terminal domain-containing protein similar to Arabidopsis thaliana vacuolar protein sorting-associated protein 53 B that is involved in retrograde transport from early and late endosomes to late Golgi, leading to the membrane fusion between late Golgi and endosomal vesicles

Gene Ontology:  GO:0015031

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Vps53_N super family cl20262
Vps53-like, N-terminal; Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex ...
1-166 1.58e-84

Vps53-like, N-terminal; Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events.


The actual alignment was detected with superfamily member pfam04100:

Pssm-ID: 427710  Cd Length: 372  Bit Score: 267.78  E-value: 1.58e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232021    1 MCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWLDKVDDRYKWFVRKLTDFERAgLSNIFPADWHMGRRLTSE 80
Cdd:pfam04100 204 ACRVADILDPSVKEELIKWFIDQQLEEYKEIFRENEEAAWLDKLDRRYAWFKRILNDFEEK-YGPIFPADWEMAERLTVE 282
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232021   81 FCTVTRDILYRIMTRRRQDLDWKLLGHAIQHTKMFEALLTKRF----PEKDGISFEKAIWSVFDTFLDVFINAQEKTLNE 156
Cdd:pfam04100 283 FCHQTRKDLAKILKRRDKEPSVKLLLFALQSTLEFEKFLDKRFskktPEPKELAFHGAISSCFEPHLTLYINSQEKTLSE 362
                         170
                  ....*....|
gi 453232021  157 FLDTCASKIR 166
Cdd:pfam04100 363 LFDKFVSEPK 372
 
Name Accession Description Interval E-value
Vps53_N pfam04100
Vps53-like, N-terminal; Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex ...
1-166 1.58e-84

Vps53-like, N-terminal; Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events.


Pssm-ID: 427710  Cd Length: 372  Bit Score: 267.78  E-value: 1.58e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232021    1 MCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWLDKVDDRYKWFVRKLTDFERAgLSNIFPADWHMGRRLTSE 80
Cdd:pfam04100 204 ACRVADILDPSVKEELIKWFIDQQLEEYKEIFRENEEAAWLDKLDRRYAWFKRILNDFEEK-YGPIFPADWEMAERLTVE 282
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232021   81 FCTVTRDILYRIMTRRRQDLDWKLLGHAIQHTKMFEALLTKRF----PEKDGISFEKAIWSVFDTFLDVFINAQEKTLNE 156
Cdd:pfam04100 283 FCHQTRKDLAKILKRRDKEPSVKLLLFALQSTLEFEKFLDKRFskktPEPKELAFHGAISSCFEPHLTLYINSQEKTLSE 362
                         170
                  ....*....|
gi 453232021  157 FLDTCASKIR 166
Cdd:pfam04100 363 LFDKFVSEPK 372
 
Name Accession Description Interval E-value
Vps53_N pfam04100
Vps53-like, N-terminal; Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex ...
1-166 1.58e-84

Vps53-like, N-terminal; Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events.


Pssm-ID: 427710  Cd Length: 372  Bit Score: 267.78  E-value: 1.58e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232021    1 MCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWLDKVDDRYKWFVRKLTDFERAgLSNIFPADWHMGRRLTSE 80
Cdd:pfam04100 204 ACRVADILDPSVKEELIKWFIDQQLEEYKEIFRENEEAAWLDKLDRRYAWFKRILNDFEEK-YGPIFPADWEMAERLTVE 282
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 453232021   81 FCTVTRDILYRIMTRRRQDLDWKLLGHAIQHTKMFEALLTKRF----PEKDGISFEKAIWSVFDTFLDVFINAQEKTLNE 156
Cdd:pfam04100 283 FCHQTRKDLAKILKRRDKEPSVKLLLFALQSTLEFEKFLDKRFskktPEPKELAFHGAISSCFEPHLTLYINSQEKTLSE 362
                         170
                  ....*....|
gi 453232021  157 FLDTCASKIR 166
Cdd:pfam04100 363 LFDKFVSEPK 372
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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