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Conserved domains on  [gi|392901716|ref|NP_001255778|]
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Methanethiol oxidase [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SBP56 super family cl22313
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 1-164 1.52e-97

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


The actual alignment was detected with superfamily member pfam05694:

Pssm-ID: 461716  Cd Length: 453  Bit Score: 288.83  E-value: 1.52e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901716    1 MPALITDILISMDDRFLYVSCWLHGDIRQYDISDPLKVKLNSQVYIGGSVHTEsnvkvlegekpiEALYVKGRKIEGGPQ 80
Cdd:pfam05694 302 MPPLVTDILISLDDRFLYVSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA------------PHPAVKGRRLNGGPQ 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901716   81 MLQLSLDGKRLYVTTSLYKKWDDQFYPEHVKSGATMVQVNIDPESGKMEINRDFLIDFGKIEGGPYLAHEMRYPGGDCTS 160
Cdd:pfam05694 370 MVQLSLDGKRLYVTNSLYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSS 449


                  ....
gi 392901716  161 DIWI 164
Cdd:pfam05694 450 DIWC 453
 
Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 1-164 1.52e-97

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


Pssm-ID: 461716  Cd Length: 453  Bit Score: 288.83  E-value: 1.52e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901716    1 MPALITDILISMDDRFLYVSCWLHGDIRQYDISDPLKVKLNSQVYIGGSVHTEsnvkvlegekpiEALYVKGRKIEGGPQ 80
Cdd:pfam05694 302 MPPLVTDILISLDDRFLYVSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA------------PHPAVKGRRLNGGPQ 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901716   81 MLQLSLDGKRLYVTTSLYKKWDDQFYPEHVKSGATMVQVNIDPESGKMEINRDFLIDFGKIEGGPYLAHEMRYPGGDCTS 160
Cdd:pfam05694 370 MVQLSLDGKRLYVTNSLYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSS 449


                  ....
gi 392901716  161 DIWI 164
Cdd:pfam05694 450 DIWC 453
 
Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 1-164 1.52e-97

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


Pssm-ID: 461716  Cd Length: 453  Bit Score: 288.83  E-value: 1.52e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901716    1 MPALITDILISMDDRFLYVSCWLHGDIRQYDISDPLKVKLNSQVYIGGSVHTEsnvkvlegekpiEALYVKGRKIEGGPQ 80
Cdd:pfam05694 302 MPPLVTDILISLDDRFLYVSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA------------PHPAVKGRRLNGGPQ 369

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392901716   81 MLQLSLDGKRLYVTTSLYKKWDDQFYPEHVKSGATMVQVNIDPESGKMEINRDFLIDFGKIEGGPYLAHEMRYPGGDCTS 160
Cdd:pfam05694 370 MVQLSLDGKRLYVTNSLYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSS 449


                  ....
gi 392901716  161 DIWI 164
Cdd:pfam05694 450 DIWC 453
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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