NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|392918830|ref|NP_001256040|]
View 

Riboflavin transporter rft-2 [Caenorhabditis elegans]

Protein Classification

riboflavin transporter family protein( domain architecture ID 10533324)

riboflavin transporter family protein is a DUF1011 domain-containing protein; similar to Homo sapiens solute carrier family 52 member 1 (SLC52A1), a riboflavin transporter that is Na(+)-independent but moderately pH-sensitive

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF1011 pfam06237
Protein of unknown function (DUF1011); Family of uncharacterized eukaryotic proteins.
 293-389 6.59e-35

Protein of unknown function (DUF1011); Family of uncharacterized eukaryotic proteins.


:

Pssm-ID: 461856  Cd Length: 99  Bit Score: 125.35  E-value: 6.59e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392918830  293 KFTFLLFTTALVNAQMNGIITSVQSYAALPYSQATYHFAVTLSNVVSPLSSFLPFFISVRSIPVLAILTACSTAMTAFIV 372
Cdd:pfam06237   3 QYAYLLVLLAWVNALTNGVLPSVQSYSCLPYGNLAYHLSVTLSNIANPLACFLAMFLPVRSLVLLGVLSLLGTLFGAYIM 82

                          90
                  ....*....|....*..
gi 392918830  373 YLAALSPNLIFNSVTIG 389
Cdd:pfam06237  83 ALAALSPCPPLVGSTIG 99
 
Name Accession Description Interval E-value
DUF1011 pfam06237
Protein of unknown function (DUF1011); Family of uncharacterized eukaryotic proteins.
 293-389 6.59e-35

Protein of unknown function (DUF1011); Family of uncharacterized eukaryotic proteins.


Pssm-ID: 461856  Cd Length: 99  Bit Score: 125.35  E-value: 6.59e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392918830  293 KFTFLLFTTALVNAQMNGIITSVQSYAALPYSQATYHFAVTLSNVVSPLSSFLPFFISVRSIPVLAILTACSTAMTAFIV 372
Cdd:pfam06237   3 QYAYLLVLLAWVNALTNGVLPSVQSYSCLPYGNLAYHLSVTLSNIANPLACFLAMFLPVRSLVLLGVLSLLGTLFGAYIM 82

                          90
                  ....*....|....*..
gi 392918830  373 YLAALSPNLIFNSVTIG 389
Cdd:pfam06237  83 ALAALSPCPPLVGSTIG 99
 
Name Accession Description Interval E-value
DUF1011 pfam06237
Protein of unknown function (DUF1011); Family of uncharacterized eukaryotic proteins.
 293-389 6.59e-35

Protein of unknown function (DUF1011); Family of uncharacterized eukaryotic proteins.


Pssm-ID: 461856  Cd Length: 99  Bit Score: 125.35  E-value: 6.59e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 392918830  293 KFTFLLFTTALVNAQMNGIITSVQSYAALPYSQATYHFAVTLSNVVSPLSSFLPFFISVRSIPVLAILTACSTAMTAFIV 372
Cdd:pfam06237   3 QYAYLLVLLAWVNALTNGVLPSVQSYSCLPYGNLAYHLSVTLSNIANPLACFLAMFLPVRSLVLLGVLSLLGTLFGAYIM 82

                          90
                  ....*....|....*..
gi 392918830  373 YLAALSPNLIFNSVTIG 389
Cdd:pfam06237  83 ALAALSPCPPLVGSTIG 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH