|
Name |
Accession |
Description |
Interval |
E-value |
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
115-1686 |
0e+00 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 881.66 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 115 TQLELDTVSKNAF-AGVQFDD--AWANltendPLPNDFHFALRFPAELRTATIAIANTWLTmrlfptidlTGPRNEGDDD 191
Cdd:TIGR01257 535 TQRALSLLEENRFwAGVVFPDmyPWTS-----SLPPHVKYKIRMDIDVVEKTNKIKDRYWD---------SGPRADPVED 600
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 192 GGippgYLREGFLPLQHSLSMAYLRQKSGEQDLPNVVMKRYPFPAYIFDPLLEGMSSIMSLIILLSFIYPCTYITKYITA 271
Cdd:TIGR01257 601 FR----YIWGGFAYLQDMVEQGITRSQMQAEPPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVL 676
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 272 EKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISAILIAILVKINwsedvAVLTHANFTALVFFLIIYIVSSICFCFMM 351
Cdd:TIGR01257 677 EKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMHG-----RILHYSDPFILFLFLLAFSTATIMQCFLL 751
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 352 ATFFSRASTAAAVTGLIWFIAYIPYSFTINSYDDLSLSSKLGWSLISNTAMGFGIKLILGFEGTGEGLQWSNFFTPVSVD 431
Cdd:TIGR01257 752 STFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEG 831
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 432 DTLTLGAVMIMMLVSCVIYMIICLYVEQVMPGSFGVPRPWNFPFTREFW-----CGEREYTGVEDIPNGHVEQRDPKA-- 504
Cdd:TIGR01257 832 DEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWlggegCSTREERALEKTEPLTEEMEDPEHpe 911
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 505 ------FETEPEGKHIGLQMRHLKKRF--GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING 576
Cdd:TIGR01257 912 gindsfFERELPGLVPGVCVKNLVKIFepSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGG 991
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 577 SDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLS 656
Cdd:TIGR01257 992 KDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLS 1071
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 657 VCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQY 736
Cdd:TIGR01257 1072 VAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 737 GSGYRLICVKRD--------------------------------------DCETNEVTALLNKYIPGLK-PECdIGAELS 777
Cdd:TIGR01257 1152 GTGFYLTLVRKMkniqsqrggcegtcsctskgfstrcparvdeitpeqvlDGDVNELMDLVYHHVPEAKlVEC-IGQELI 1230
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 778 YQLPDS--ASAKFEEMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKDN----TGNIKDQHEIMNGGSGFRG--EDD 849
Cdd:TIGR01257 1231 FLLPNKnfKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSgslfAGGAQQKRENANLRHPCSGptEKA 1310
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 850 NESVQSDGIFSENRRLLQGLQLLS------------------NQWKAMLLKKFLYTWRNKLLLLIQNIMPVFFVVVTILI 911
Cdd:TIGR01257 1311 GQTPQASHTCSPGQPAAHPEGQPPpepedpgvplntgarlilQHVQALLVKRFQHTIRSHKDFLAQIVLPATFVFLALML 1390
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 912 IKTQGTFQELKPITIS-------------------------------------------LTQYPLA-------------- 934
Cdd:TIGR01257 1391 SIIIPPFGEYPALTLHpwmygqqytffsmdepnsehlevladvllnkpgfgnrclkeewLPEYPCGnstpwktpsvspni 1470
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 935 -------------------------VTVL----------------DRSN--VQNGTGYEIAN----KYEDLARS------ 961
Cdd:TIGR01257 1471 thlfqkqkwtaahpspscrcstrekLTMLpecpegagglpppqrtQRSTeiLQDLTDRNISDflvkTYPALIRSslkskf 1550
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 962 ------YGsnyGLELTGT--------QGFEDYILDLGKTIQV------RINSRYLVA---ATITESKITAWLNNQALHTA 1018
Cdd:TIGR01257 1551 wvneqrYG---GISIGGKlpaipitgEALVGFLSDLGQMMNVsggpvtREASKEMPDflkHLETEDNIKVWFNNKGWHAL 1627
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1019 PLTVNMVHNAIadkLFGSSVK--------IQVTNAPLPYTTSTLLSQLSTGNNLGTQLASNLCFCMCFVSSIYILFLIKE 1090
Cdd:TIGR01257 1628 VSFLNVAHNAI---LRASLPKdrdpeeygITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQE 1704
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1091 RESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTALIVVITIVCFQETGLSTFGELGRYYLLLLLFGFAVLPFIYIMSLF 1170
Cdd:TIGR01257 1705 RVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFL 1784
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1171 FREPATGFARVSIVNIFCGMALFIVVVVMssELFDTKDTADILGWIFR----IFPHFSLAMSLNKVYTNTATRNACAKAG 1246
Cdd:TIGR01257 1785 FDVPSTAYVALSCANLFIGINSSAITFVL--ELFENNRTLLRFNAMLRklliVFPHFCLGRGLIDLALSQAVTDVYAQFG 1862
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1247 alppillcelvpQCCNLKPyFAWEEPGvlPETVYMAVTGVVFFLIIIVLEFRlinelmFKIRQLISKPPPPPTEGQlDDD 1326
Cdd:TIGR01257 1863 ------------EEHSANP-FQWDLIG--KNLVAMAVEGVVYFLLTLLIQHH------FFLSRWIAEPAKEPIFDE-DDD 1920
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1327 VANERERILQMSSNelaTKNLVLDRVTKYYG--QFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAY 1404
Cdd:TIGR01257 1921 VAEERQRIISGGNK---TDILRLNELTKVYSgtSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1405 VQGLSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKR 1484
Cdd:TIGR01257 1998 VAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1485 KLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:TIGR01257 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1565 KNKFSKGLILKIKVrrnlealrqarlsggyaRNPDEQTVPaqmsqrDIDAVKEFVETEYPNSILQEEYQGILTFYIPLTG 1644
Cdd:TIGR01257 2158 KSKFGDGYIVTMKI-----------------KSPKDDLLP------DLNPVEQFFQGNFPGSVQRERHYNMLQFQVSSSS 2214
|
1770 1780 1790 1800
....*....|....*....|....*....|....*....|..
gi 442617143 1645 VkwSRIFGLMESNRDQLNVEDYSVSQTTLEEIFLEFAKYQRE 1686
Cdd:TIGR01257 2215 L--ARIFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTE 2254
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
516-733 |
4.47e-107 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 339.87 E-value: 4.47e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKM--VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIC 593
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEP 673
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 674 SSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLK 733
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
1347-1565 |
3.02e-101 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 323.69 E-value: 3.02e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFM--AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYC 1424
Cdd:cd03263 1 LQIRNLTKTYKKGTkpAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEP 1504
Cdd:cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 1505 TTGMDPAARRQLWNMVCRIRdSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLK 1565
Cdd:cd03263 161 TSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQELK 220
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
516-728 |
1.24e-77 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 256.91 E-value: 1.24e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 595
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 676 GMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:COG1131 161 GLDPEARRELWELLRELAAeGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGT 214
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
1347-1568 |
1.06e-76 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 254.22 E-value: 1.06e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQ 1426
Cdd:COG1131 1 IEVRGLTKRYGDKTALDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLLRPTSGEVRVLGEDVARDPAEVRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:COG1131 81 EPALYPDLTVRENLRFFARLYGLPRKEARERIDELLELFGLTDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPTS 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1507 GMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKF 1568
Cdd:COG1131 161 GLDPEARRELWELLRELAAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKARL 222
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
1347-1555 |
5.00e-60 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 203.78 E-value: 5.00e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQ 1426
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGREVLRifcmlrgvqesrirqlsedlaksfgfmkhidkqthaYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:cd03230 81 EPSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTS 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 1507 GMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:cd03230 125 GLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
1347-1565 |
1.21e-59 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 204.53 E-value: 1.21e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQ 1426
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1507 GMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLK 1565
Cdd:cd03265 161 GLDPQTRAHVWEYIEKLkEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
516-723 |
1.80e-59 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 202.24 E-value: 1.80e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 595
Cdd:cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIrffsrmkglrgkaveqevakylkmieledkanvassKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03230 81 EPSLYENLTVRENL------------------------------------KLSGGMKQRLALAQALLHDPELLILDEPTS 124
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 676 GMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03230 125 GLDPESRREFWELLRELKKeGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
516-733 |
9.82e-59 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 201.83 E-value: 9.82e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 595
Cdd:cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 676 GMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLK 733
Cdd:cd03265 161 GLDPQTRAHVWEYIEklKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
516-737 |
9.08e-58 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 200.08 E-value: 9.08e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 595
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:COG4555 82 ERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 676 GMDPSARRQLWDLLQQEK-VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYG 737
Cdd:COG4555 162 GLDVMARRLLREILRALKkEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIG 224
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
523-821 |
1.01e-57 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 202.23 E-value: 1.01e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 523 KRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDE 602
Cdd:TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 603 MSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSAR 682
Cdd:TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 683 RQLWDLLQQEK-VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYrLICVKRDDCETNEVTALLnk 761
Cdd:TIGR01188 161 RAIWDYIRALKeEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT-LESRPRDIQSLKVEVSML-- 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 762 yiPGLKPECDIGAELSYQLPDSASAKFEEMFGQLEEQSDELHLNGYGV-----GITSMEEVFMKV 821
Cdd:TIGR01188 238 --IAELGETGLGLLAVTVDSDRIKILVPDGDETVPEIVEAAIRNGIRIrsistERPSLDDVFLKL 300
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
1347-1570 |
1.43e-57 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 199.70 E-value: 1.43e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQ 1426
Cdd:COG4555 2 IEVENLSKKYGKVPALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLLKPDSGSILIDGEDVRKEPREARRQIGVLPD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:COG4555 82 ERGLYDRLTVRENIRYFAELYGLFDEELKKRIEELIELLGLEEFLDRRVGELSTGMKKKVALARALVHDPKVLLLDEPTN 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1507 GMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSK 1570
Cdd:COG4555 162 GLDVMARRLLREILRALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDELREEIGE 225
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
516-727 |
4.94e-50 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 176.61 E-value: 4.94e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNmFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 595
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLT-LGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 676 GMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:cd03264 160 GLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
516-727 |
6.99e-50 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 179.62 E-value: 6.99e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 595
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 676 GMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK13537 168 GLDPQARHLMWERLRSlLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
250-828 |
6.95e-48 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 189.45 E-value: 6.95e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 250 MSLIILLSFIyPCTYITkYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSFIMLTISA-ILIAILVKInwsEDVAVLTHA 328
Cdd:TIGR01257 1684 ICVIFAMSFV-PASFVL-YLIQERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAgLVVGIFIGF---QKKAYTSPE 1758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 329 NFTALVFFLIIYIVSSICFCFMMATFFSRASTA-AAVTGLIWFIAYIPYSFTI------NSYDDLSLSSKLGWSLISNTA 401
Cdd:TIGR01257 1759 NLPALVALLMLYGWAVIPMMYPASFLFDVPSTAyVALSCANLFIGINSSAITFvlelfeNNRTLLRFNAMLRKLLIVFPH 1838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 402 MGFGIKLI--------------LGFEGTGEGLQWSnfftpvsvddtlTLGAVMIMMLVSCVIYMIICLYVEQvmpgsfgv 467
Cdd:TIGR01257 1839 FCLGRGLIdlalsqavtdvyaqFGEEHSANPFQWD------------LIGKNLVAMAVEGVVYFLLTLLIQH-------- 1898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 468 prpwNFPFTRefWCGEREYTGVEDIPNGHVEQRdpKAFETEPEGKHIgLQMRHLKKRFG--NKMVVKGLSMNMFEDEITV 545
Cdd:TIGR01257 1899 ----HFFLSR--WIAEPAKEPIFDEDDDVAEER--QRIISGGNKTDI-LRLNELTKVYSgtSSPAVDRLCVGVRPGECFG 1969
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 546 LLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQ 625
Cdd:TIGR01257 1970 LLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEK 2049
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 626 EVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWD-LLQQEKVGRTLLLTTHF 704
Cdd:TIGR01257 2050 VANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNtIVSIIREGRAVVLTSHS 2129
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 705 MDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYrLICVK----RDDC--ETNEVTALLNKYIPGLKPECDIGAELSY 778
Cdd:TIGR01257 2130 MEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGY-IVTMKikspKDDLlpDLNPVEQFFQGNFPGSVQRERHYNMLQF 2208
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 442617143 779 QLPDSASAKfeeMFGQLEEQSDELHLNGYGVGITSMEEVFMKVGAEKDNT 828
Cdd:TIGR01257 2209 QVSSSSLAR---IFQLLISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTET 2255
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
516-824 |
9.36e-46 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 167.59 E-value: 9.36e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRtniEGARMSLGICPQ 595
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLD---PEDRRRIGYLPE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:COG4152 79 ERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 676 GMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSG-YRLicvkrddcETN 753
Cdd:COG4152 159 GLDPVNVELLKDVIRELAAkGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQFGRNtLRL--------EAD 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 754 EVTALLNKyIPGLKPECDIGAELSYQLPDSASAkfEEMFGQLEEQSDelhLNGYGVGITSMEEVF-MKVGAE 824
Cdd:COG4152 231 GDAGWLRA-LPGVTVVEEDGDGAELKLEDGADA--QELLRALLARGP---VREFEEVRPSLNEIFiEVVGEK 296
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
516-727 |
1.33e-44 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 161.38 E-value: 1.33e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNK----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLG 591
Cdd:cd03266 2 ITADALTKRFRDVkktvQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 672 EPSSGMDPSARRQLWDLLQQEK-VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRaLGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
514-721 |
2.16e-44 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 165.00 E-value: 2.16e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 514 IGLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIC 593
Cdd:PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEP 673
Cdd:PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 674 SSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDG 721
Cdd:PRK13536 200 TTGLDPHARHLIWERLRSlLARGKTILLTTHFMEEAERLCDRLCVLEAG 248
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
1347-1554 |
6.92e-44 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 159.46 E-value: 6.92e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYY----GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIG 1422
Cdd:cd03266 2 ITADALTKRFrdvkKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLD 1502
Cdd:cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1503 EPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03266 162 EPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGR 213
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
1347-1556 |
9.29e-44 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 158.51 E-value: 9.29e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVqEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQ 1426
Cdd:cd03264 1 LQLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 1507 GMDPAARRQLWNMVCRIrDSGKSIVLTSHSMEECEALCTRLAIMVNGEFK 1556
Cdd:cd03264 160 GLDPEERIRFRNLLSEL-GEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1347-1553 |
1.22e-43 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 161.90 E-value: 1.22e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQ 1426
Cdd:PRK13537 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 442617143 1507 GMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
516-727 |
4.29e-43 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 156.67 E-value: 4.29e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRtniEGARMSLGICPQ 595
Cdd:cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD---IAARNRIGYLPE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 676 GMDPSARRQLWDLLQQEK-VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:cd03269 158 GLDPVNVELLKDVIRELArAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
516-728 |
9.95e-42 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 153.64 E-value: 9.95e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRF-GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGARMSLGIC 593
Cdd:COG1122 1 IELENLSFSYpGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDItKKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQH--NVLFdEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:COG1122 81 FQNpdDQLF-APTVEEDVAFGPENLGLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVLVLD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 672 EPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:COG1122 160 EPTAGLDPRGRRELLELLKRlNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGT 217
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1347-1587 |
1.30e-41 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 155.65 E-value: 1.30e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESnmnSIYKMIGYCPQ 1426
Cdd:COG4152 2 LELKGLTKRFGDKTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAPDSGEVLWDGEPLDP---EDRRRIGYLPE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:COG4152 79 ERGLYPKMKVGEQLVYLARLKGLSKAEAKRRADEWLERLGLGDRANKKVEELSKGNQQKVQLIAALLHDPELLILDEPFS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1507 GMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFsKGLILKIKVRRNLEALR 1586
Cdd:COG4152 159 GLDPVNVELLKDVIRELAAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEIRRQF-GRNTLRLEADGDAGWLR 237
|
.
gi 442617143 1587 Q 1587
Cdd:COG4152 238 A 238
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
1352-1554 |
4.63e-41 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 150.89 E-value: 4.63e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1352 VTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESnmnSIYKMIGYCPQFDALL 1431
Cdd:cd03269 6 VTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNRIGYLPEERGLY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 DDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPA 1511
Cdd:cd03269 83 PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPV 162
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 442617143 1512 ARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03269 163 NVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
516-723 |
5.22e-41 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 150.45 E-value: 5.22e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARmSLGICPQ 595
Cdd:cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALR-RIGALIE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQevakYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDE----VLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 676 GMDPSARRQLWDLLQQE-KVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03268 156 GLDPDGIKELRELILSLrDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
516-728 |
1.85e-40 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 150.14 E-value: 1.85e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGN-KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR-TNIEGARMSLGIC 593
Cdd:cd03295 1 IEFENVTKRYGGgKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIReQDPVELRRKIGYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDK--ANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAefADRYPHELSGGQQQRVGVARALAADPPLLLMD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 672 EPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:cd03295 161 EPFGALDPITRDQLQEEFKrlQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGT 219
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
1352-1553 |
2.09e-40 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 148.90 E-value: 2.09e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1352 VTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNmNSIYKMIGYCPQFDALL 1431
Cdd:cd03268 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIGALIEAPGFY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 DDLTGREVLRIFCMLRGVQESRIRQLSEDLaksfGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPA 1511
Cdd:cd03268 85 PNLTARENLRLLARLLGIRKKRIDEVLDVV----GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442617143 1512 ARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:cd03268 161 GIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKG 202
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
516-728 |
3.64e-40 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 149.12 E-value: 3.64e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICP- 594
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRt 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 -QHNVLFDEMSV------------SNHIRFFSRMKGLRgkAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCAL 661
Cdd:cd03219 81 fQIPRLFPELTVlenvmvaaqartGSGLLLARARREER--EARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 662 CGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRErGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
516-715 |
2.72e-39 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 145.70 E-value: 2.72e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 595
Cdd:COG4133 3 LEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLGH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAkyLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:COG4133 83 ADGLKPELTVRENLRFWAALYGLRADREAIDEA--LEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFT 160
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 442617143 676 GMDPSARRQLWDLLQQEKV-GRTLLLTTHfmDEADVLGDRI 715
Cdd:COG4133 161 ALDAAGVALLAELIAAHLArGGAVLLTTH--QPLELAAARV 199
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
516-728 |
1.25e-38 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 144.69 E-value: 1.25e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMSLGICPQ 595
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI-TNLPPHKRPVNTVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 676 GMDPSARRQL---WDLLQQEkVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:cd03300 160 ALDLKLRKDMqleLKRLQKE-LGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
516-728 |
3.83e-38 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 144.03 E-value: 3.83e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrtniegARMS------ 589
Cdd:COG0411 5 LEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDI------TGLPphriar 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 590 LGICP--QHNVLFDEMSV----------SNHIRFFSRMKGLRG-----KAVEQEVAKYLKMIELEDKANVASSKLSGGMK 652
Cdd:COG0411 79 LGIARtfQNPRLFPELTVlenvlvaahaRLGRGLLAALLRLPRarreeREARERAEELLERVGLADRADEPAGNLSYGQQ 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 653 RKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEadVLG--DRIAIMCDGELKCQGT 728
Cdd:COG0411 159 RRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRlrDERGITILLIEHDMDL--VMGlaDRIVVLDFGRVIAEGT 236
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
516-728 |
5.50e-38 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 143.03 E-value: 5.50e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSL----G 591
Cdd:cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLrrrmG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKY-LKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEkLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 671 DEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:cd03261 161 DEPTAGLDPIASGVIDDLIRslKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1352-1553 |
5.92e-38 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 146.13 E-value: 5.92e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1352 VTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALL 1431
Cdd:PRK13536 47 VSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLD 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 DDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPA 1511
Cdd:PRK13536 127 LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH 206
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442617143 1512 ARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:PRK13536 207 ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAG 248
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
516-723 |
6.99e-38 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 141.89 E-value: 6.99e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMSLGICPQ 595
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV-TGVPPERRNIGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 676 GMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03259 160 ALDAKLREELREELKelQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
516-718 |
1.71e-37 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 141.07 E-value: 1.71e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNK----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGsdirTNIEGARMSLG 591
Cdd:cd03293 1 LEVRNVSKTYGGGggavTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDG----EPVTGPGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 672 EPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIM 718
Cdd:cd03293 157 EPFSALDALTREQLQEELLDiwRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
516-728 |
2.06e-37 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 141.27 E-value: 2.06e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSL----G 591
Cdd:COG1127 6 IEVRNLTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDITGLSEKELYELrrriG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHIRFFSRM-KGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:COG1127 86 MLFQGGALFDSLTVFENVAFPLREhTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLY 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 671 DEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:COG1127 166 DEPTAGLDPITSAVIDELIRelRDELGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGT 225
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
517-722 |
2.10e-37 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 138.15 E-value: 2.10e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 517 QMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGARMSLGICPQ 595
Cdd:cd00267 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIaKLPLEELRRRIGYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 hnvlfdemsvsnhirffsrmkglrgkaveqevakylkmieledkanvasskLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd00267 81 ---------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTS 109
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 442617143 676 GMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:cd00267 110 GLDPASRERLLELLRELAEeGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
516-723 |
5.92e-37 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 143.70 E-value: 5.92e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMSLGICPQ 595
Cdd:COG3842 6 LELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDGRDV-TGLPPEKRNVGMVFQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:COG3842 85 DYALFPHLTVAENVAFGLRMRGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQQRVALARALAPEPRVLLLDEPLS 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 676 GMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:COG3842 165 ALDAKLREEMREELRrlQRELGITFIYVTHDQEEALALADRIAVMNDGRI 214
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
531-675 |
2.61e-36 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 135.08 E-value: 2.61e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 531 VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGARMSLGICPQHNVLFDEMSVSNHI 609
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLtDDERKSLRKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 610 RFFSRMKGLRGKAVEQEVAKYLKMIELEDKAN----VASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGDLADrpvgERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
516-723 |
3.24e-36 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 137.24 E-value: 3.24e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKM----VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSL- 590
Cdd:cd03255 1 IELKNLSKTYGGGGekvqALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 ----GICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTK 666
Cdd:cd03255 81 rrhiGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 667 VVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADvLGDRIAIMCDGEL 723
Cdd:cd03255 161 IILADEPTGNLDSETGKEVMELLRElnKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
516-718 |
9.43e-36 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 137.14 E-value: 9.43e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRF----GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGsdirTNIEGARMSLG 591
Cdd:COG1116 8 LELRGVSKRFptggGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKPTSGEVLVDG----KPVTGPGPDRG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:COG1116 84 VVFQEPALLPWLTVLDNVALGLELRGVPKAERRERARELLELVGLAGFEDAYPHQLSGGMRQRVAIARALANDPEVLLMD 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 672 EPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIM 718
Cdd:COG1116 164 EPFGALDALTRERLQDELLRlwQETGKTVLFVTHDVDEAVFLADRVVVL 212
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
1348-1554 |
1.31e-35 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 135.29 E-value: 1.31e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1348 VLDRVTKYYGQFM--AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGYC 1424
Cdd:cd03225 1 ELKNLSFSYPDGArpALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLtKLSLKELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQF--DALLDDLTGREVlrIF-CMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:cd03225 81 FQNpdDQFFGPTVEEEV--AFgLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1502 DEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
526-722 |
1.37e-35 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 135.29 E-value: 1.37e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR-TNIEGARMSLGICPQH-------N 597
Cdd:cd03225 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTkLSLKELRRKVGLVFQNpddqffgP 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 598 VLFDEMSvsnhirfFS-RMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSG 676
Cdd:cd03225 92 TVEEEVA-------FGlENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 442617143 677 MDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:cd03225 165 LDPAGRRELLELLKKlKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
1347-1575 |
1.54e-35 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 135.54 E-value: 1.54e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVT-KYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGYC 1424
Cdd:COG1122 1 IELENLSfSYPGGTPALDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLLKPTSGEVLVDGKDItKKNLRELRRKVGLV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQF--DALLDDLTGREV---LRIFcmlrGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVI 1499
Cdd:COG1122 81 FQNpdDQLFAPTVEEDVafgPENL----GLPREEIRERVEEALELVGLEHLADRPPHELSGGQKQRVAIAGVLAMEPEVL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1500 YLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLknkFSKGLILK 1575
Cdd:COG1122 157 VLDEPTAGLDPRGRRELLELLKRLNKEGKTVIIVTHDLDLVAELADRVIVLDDGRIVADGTPREV---FSDYELLE 229
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
516-723 |
8.45e-35 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 132.76 E-value: 8.45e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMSLGICPQ 595
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV-TDLPPKDRDIAMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 676 GMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03301 160 NLDAKLRVQMRAELKrlQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
500-729 |
1.61e-34 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 133.92 E-value: 1.61e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 500 RDPKAFETEPEGKHIGLQmrhLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI 579
Cdd:cd03294 12 KNPQKAFKLLAKGKSKEE---ILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 580 RTNIEGA-----RMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRK 654
Cdd:cd03294 89 AAMSRKElrelrRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQR 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 655 LSVCCALCGDTKVVLCDEPSSGMDPSARRQLWD-LLQ-QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:cd03294 169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDeLLRlQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTP 245
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
516-728 |
1.97e-34 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 133.25 E-value: 1.97e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT--NIEGARMsLGIC 593
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDLASlsRRELARR-IAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSV--------SNHIRFFSRMkglrGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDT 665
Cdd:COG1120 81 PQEPPAPFGLTVrelvalgrYPHLGLFGRP----SAEDREAVEEALERTGLEHLADRPVDELSGGERQRVLIARALAQEP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 666 KVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:COG1120 157 PLLLLDEPTSHLDLAHQLEVLELLRRlaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGP 221
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
516-722 |
2.26e-34 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 130.38 E-value: 2.26e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI---RTNIEGARMSLGI 592
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLtdlEDELPPLRRRIGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSNHIRFfsrmkglrgkaveqevakylkmieledkanvassKLSGGMKRKLSVCCALCGDTKVVLCDE 672
Cdd:cd03229 81 VFQDFALFPHLTVLENIAL----------------------------------GLSGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 673 PSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:cd03229 127 PTSALDPITRREVRALLKSlqAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
516-723 |
6.39e-34 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 130.34 E-value: 6.39e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI---RTNIEGARMSLGI 592
Cdd:cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLtddKKNINELRQKVGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSNHIRFFSR-MKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:cd03262 81 VFQQFNLFPHLTVLENITLAPIkVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 672 EPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03262 161 EPTSALDPELVGEVLDVMKDlAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
516-729 |
6.63e-34 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 131.24 E-value: 6.63e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNI---EGARMSLGI 592
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDI-THLpmhERARLGIGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSNHIR-FFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:TIGR04406 81 LPQEASIFRKLTVEENIMaVLEIRKDLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILLD 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 672 EPSSGMDPSAR---RQLWDLLQQEKVGrtLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:TIGR04406 161 EPFAGVDPIAVgdiKKIIKHLKERGIG--VLITDHNVRETLDICDRAYIISDGKVLAEGTP 219
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
516-729 |
1.41e-33 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 129.97 E-value: 1.41e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNI---EGARMSLGI 592
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI-TKLpmhKRARLGIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDE 672
Cdd:cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 673 PSSGMDPSARRQLWDL---LQQEKVGrtLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:cd03218 160 PFAGVDPIAVQDIQKIikiLKDRGIG--VLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217
|
|
| galliderm_ABC |
TIGR03740 |
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 ... |
516-727 |
1.84e-33 |
|
gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit; Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Pssm-ID: 163452 [Multi-domain] Cd Length: 223 Bit Score: 129.44 E-value: 1.84e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSD-IRTNIEgarmSLGICP 594
Cdd:TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPwTRKDLH----KIGSLI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QHNVLFDEMSVSNHIRFFSRMKGLRgkavEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:TIGR03740 77 ESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 675 SGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:TIGR03740 153 NGLDPIGIQELRELIRSfPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQG 206
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
1347-1535 |
2.15e-33 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 128.75 E-value: 2.15e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQ 1426
Cdd:COG4133 3 LEAENLSCRRGERLLFSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLPPSAGEVLWNGEPIRDAREDYRRRLAYLGH 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGREVLRIFCMLRGVQESRIRQlsEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:COG4133 83 ADGLKPELTVRENLRFWAALYGLRADREAI--DEALEAVGLAGLADLPVRQLSAGQKRRVALARLLLSPAPLWLLDEPFT 160
|
170 180
....*....|....*....|....*....
gi 442617143 1507 GMDPAARRQLWNMVCRIRDSGKSIVLTSH 1535
Cdd:COG4133 161 ALDAAGVALLAELIAAHLARGGAVLLTTH 189
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
1347-1554 |
3.19e-33 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 129.09 E-value: 3.19e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKM-IGYC 1424
Cdd:cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGlPPHEIARLgIGRT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQFDALLDDLTGREVLRI---------FCMLRGV-QESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIG 1494
Cdd:cd03219 81 FQIPRLFPELTVLENVMVaaqartgsgLLLARARrEEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1495 SPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
515-729 |
4.12e-33 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 128.99 E-value: 4.12e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNI---EGARMSLG 591
Cdd:COG1137 3 TLEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDI-THLpmhKRARLGIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:COG1137 82 YLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFGITHLRKSKAYSLSGGERRRVEIARALATNPKFILLD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 672 EPSSGMDPSARRQLWDL---LQQEKVGrtLLLTTHFMDEAdvLG--DRIAIMCDGELKCQGTS 729
Cdd:COG1137 162 EPFAGVDPIAVADIQKIirhLKERGIG--VLITDHNVRET--LGicDRAYIISEGKVLAEGTP 220
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
1347-1554 |
6.69e-33 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 128.04 E-value: 6.69e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNsIYKM----IG 1422
Cdd:cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDI-TKLP-MHKRarlgIG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLD 1502
Cdd:cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1503 EPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGK 210
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
516-729 |
7.50e-33 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 135.42 E-value: 7.50e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNK-----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSL 590
Cdd:COG1123 261 LEVRNLSKRYPVRgkggvRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLRPTSGSILFDGKDLTKLSRRSLREL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 ----GICPQH--NVLFDEMSVSNHIRF-FSRMKGLRGKAVEQEVAKYLKMIEL-EDKANVASSKLSGGMKRKLSVCCALC 662
Cdd:COG1123 341 rrrvQMVFQDpySSLNPRMTVGDIIAEpLRLHGLLSRAERRERVAELLERVGLpPDLADRYPHELSGGQRQRVAIARALA 420
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 663 GDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:COG1123 421 LEPKLLILDEPTSALDVSVQAQILNLLRdlQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPT 489
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
518-728 |
9.28e-33 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 127.70 E-value: 9.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 518 MRHLKKRFGNKM----VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI----RTNIEGARMS 589
Cdd:cd03258 4 LKNVSKVFGDTGgkvtALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLtllsGKELRKARRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 590 LGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVL 669
Cdd:cd03258 84 IGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLL 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 670 CDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:cd03258 164 CDEATSALDPETTQSILALLRdiNRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
516-723 |
3.09e-32 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 126.08 E-value: 3.09e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNK----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLG 591
Cdd:cd03257 2 LEVKNLSVSFPTGggsvKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ----ICPQH--NVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSK---LSGGMKRKLSVCCALC 662
Cdd:cd03257 82 keiqMVFQDpmSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYpheLSGGQRQRVAIARALA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 663 GDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKklQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
516-723 |
3.64e-32 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 125.76 E-value: 3.64e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFP-----PTSGTAIINGSDIRT---NIEGAR 587
Cdd:cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDlipgaPDEGEVLLDGKDIYDldvDVLELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 588 MSLGICPQHNVLFDeMSVSNHIRFFSRMKGLRGKAV-EQEVAKYLKMIELED--KANVASSKLSGGMKRKLSVCCALCGD 664
Cdd:cd03260 81 RRVGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEElDERVEEALRKAALWDevKDRLHALGLSGGQQQRLCLARALANE 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 665 TKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
1349-1554 |
4.91e-32 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 123.12 E-value: 4.91e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIY-KMIGYCPQF 1427
Cdd:cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELrRRIGYVPQL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1428 dallddltgrevlrifcmlrgvqesrirqlsedlaksfgfmkhidkqthaySGGNKRKLSTAIAVIGSPSVIYLDEPTTG 1507
Cdd:cd00267 82 ---------------------------------------------------SGGQRQRVALARALLLNPDLLLLDEPTSG 110
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 442617143 1508 MDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd00267 111 LDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
516-728 |
2.64e-30 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 120.90 E-value: 2.64e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNkMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMSLGICPQ 595
Cdd:cd03299 1 LKVENLSKDWKE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI-TNLPPEKRDISYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 676 GMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:cd03299 159 ALDVRTKEKLREELKkiRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGK 213
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
516-743 |
3.83e-30 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 120.58 E-value: 3.83e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRtnieGARMSLGICPQ 595
Cdd:COG1121 7 IELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPR----RARRRIGYVPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HnVLFD-----------EMSVSNHIRFFSRmkglRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGD 664
Cdd:COG1121 83 R-AEVDwdfpitvrdvvLMGRYGRRGLFRR----PSRADREAVDEALERVGLEDLADRPIGELSGGQQQRVLLARALAQD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 665 TKVVLCDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMcDGELKCQG------TSFFLKKQYG 737
Cdd:COG1121 158 PDLLLLDEPFAGVDAATEEALYELLRELRReGKTILVVTHDLGAVREYFDRVLLL-NRGLVAHGppeevlTPENLSRAYG 236
|
....*.
gi 442617143 738 SGYRLI 743
Cdd:COG1121 237 GPVALL 242
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
502-728 |
9.34e-30 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 123.13 E-value: 9.34e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 502 PKAFETEPEGKHIgLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrT 581
Cdd:PRK09452 2 KKLNKQPSSLSPL-VELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDI-T 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 582 NIEGARMSLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCAL 661
Cdd:PRK09452 80 HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 662 CGDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKalQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
516-722 |
1.52e-29 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 118.82 E-value: 1.52e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGN-KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT----NIEGARMSL 590
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKlkgkALRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 GICPQHNVLFDEMSVS--------NHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALC 662
Cdd:cd03256 81 GMIFQQFNLIERLSVLenvlsgrlGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 663 GDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRinREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1347-1554 |
2.58e-29 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 118.60 E-value: 2.58e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNS--IYKM-IGY 1423
Cdd:COG0411 5 LEVRGLTKRFGGLVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGFYRPTSGRILFDGRDI-TGLPPhrIARLgIAR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1424 CPQFDALLDDLTGREVLRIFCMLRG---------------VQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLST 1488
Cdd:COG0411 84 TFQNPRLFPELTVLENVLVAAHARLgrgllaallrlprarREEREARERAEELLERVGLADRADEPAGNLSYGQQRRLEI 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1489 AIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRD-SGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:COG0411 164 ARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDeRGITILLIEHDMDLVMGLADRIVVLDFGR 230
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
515-728 |
3.41e-29 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 117.83 E-value: 3.41e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMSLGICP 594
Cdd:cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA-TDVPVQERNVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAK----YLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAkvheLLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 671 DEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:cd03296 161 DEPFGALDAKVRKELRRWLRRlhDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
1347-1564 |
5.49e-29 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 117.05 E-value: 5.49e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMnSIYKM----IG 1422
Cdd:COG1137 4 LEAENLVKSYGKRTVVKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGRIFLDGEDI-THL-PMHKRarlgIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGfMKHIDKQT-HAYSGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:COG1137 82 YLPQEASIFRKLTVEDNILAVLELRKLSKKEREERLEELLEEFG-ITHLRKSKaYSLSGGERRRVEIARALATNPKFILL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1502 DEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:COG1137 161 DEPFAGVDPIAVADIQKIIRHLKERGIGVLITDHNVRETLGICDRAYIISEGKVLAEGTPEEI 223
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
516-723 |
6.66e-29 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 115.68 E-value: 6.66e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICP 594
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLSAmPPPEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QHNVLFDEmSVSNHIRFFSRMKGLRGKavEQEVAKYLKMIELED---KANVasSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:COG4619 81 QEPALWGG-TVRDNLPFPFQLRERKFD--RERALELLERLGLPPdilDKPV--ERLSGGERQRLALIRALLLQPDVLLLD 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 672 EPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:COG4619 156 EPTSALDPENTRRVEELLREylAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
516-729 |
2.01e-28 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 114.84 E-value: 2.01e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNI---EGARMSLGI 592
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI-TGLpphERARAGIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSNHIrffsRM--KGLRGKAVEQEVAKYLKMI-ELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVL 669
Cdd:cd03224 80 VPEGRRIFPELTVEENL----LLgaYARRRAKRKARLERVYELFpRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLL 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 670 CDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:cd03224 156 LDEPSEGLAPKIVEEIFEAIRELRDeGVTILLVEQNARFALEIADRAYVLERGRVVLEGTA 216
|
|
| LPS_export_lptB |
TIGR04406 |
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ... |
1347-1566 |
6.89e-28 |
|
LPS export ABC transporter ATP-binding protein; Members of this fmaily are LptB, the ATP-binding cassette protein of an ABC transporter involved in lipopolysaccharide export. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 275199 [Multi-domain] Cd Length: 239 Bit Score: 113.91 E-value: 6.89e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNsIYKM----IG 1422
Cdd:TIGR04406 2 LVAENLIKSYKKRKVVNDVSLSVKSGEIVGLLGPNGAGKTTSFYMIVGLVRPDAGKILIDGQDI-THLP-MHERarlgIG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQFDALLDDLTGREVLRIFCMLRG-VQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:TIGR04406 80 YLPQEASIFRKLTVEENIMAVLEIRKdLDRAEREERLEALLEEFQISHLRDNKAMSLSGGERRRVEIARALATNPKFILL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1502 DEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKN 1566
Cdd:TIGR04406 160 DEPFAGVDPIAVGDIKKIIKHLKERGIGVLITDHNVRETLDICDRAYIISDGKVLAEGTPAEIVA 224
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
1347-1553 |
1.03e-27 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 112.61 E-value: 1.03e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNSIYKMIGYCPQ 1426
Cdd:cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDV-TGVPPERRNIGMVFQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 442617143 1507 GMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:cd03259 160 ALDAKLREELREELKELqRELGITTIYVTHDQEEALALADRIAVMNEG 207
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
516-723 |
1.23e-27 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 112.83 E-value: 1.23e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKM----VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGA----- 586
Cdd:COG1136 5 LELRNLTKSYGTGEgevtALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDISSLSERElarlr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 587 RMSLGICPQ-HNvLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDT 665
Cdd:COG1136 85 RRHIGFVFQfFN-LLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 666 KVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHfmdEADVLG--DRIAIMCDGEL 723
Cdd:COG1136 164 KLILADEPTGNLDSKTGEEVLELLRElnRELGTTIVMVTH---DPELAAraDRVIRLRDGRI 222
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1347-1563 |
1.52e-27 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 112.88 E-value: 1.52e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIykmiGYCPQ 1426
Cdd:COG1121 7 IELENLTVSYGGRPVLEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLPPTSGTVRLFGKPPRRARRRI----GYVPQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDD--LTGREV--------LRIFCMLRGVQESRIRQLsedLAKsFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSP 1496
Cdd:COG1121 83 RAEVDWDfpITVRDVvlmgrygrRGLFRRPSRADREAVDEA---LER-VGLEDLADRPIGELSGGQQQRVLLARALAQDP 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1497 SVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLaIMVNGEFKCIGSTQH 1563
Cdd:COG1121 159 DLLLLDEPFAGVDAATEEALYELLRELRREGKTILVVTHDLGAVREYFDRV-LLLNRGLVAHGPPEE 224
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
516-728 |
2.43e-27 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 118.47 E-value: 2.43e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRF--GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPT---SGTAIINGSDIRT---NIEGAR 587
Cdd:COG1123 5 LEVRDLSVRYpgGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGgriSGEVLLDGRDLLElseALRGRR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 588 MSLgicpqhnVLFDEMS------VSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCAL 661
Cdd:COG1123 85 IGM-------VFQDPMTqlnpvtVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMAL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 662 CGDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:COG1123 158 ALDPDLLIADEPTTALDVTTQAEILDLLRelQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGP 226
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
497-742 |
3.77e-27 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 118.72 E-value: 3.77e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 497 VEQRDPKAFETEPEG--KHIGLQMRHLkkRFG----NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSG 570
Cdd:COG4987 313 LDAPPAVTEPAEPAPapGGPSLELEDV--SFRypgaGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSG 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 571 TAIINGSDIRT-NIEGARMSLGICPQHNVLFDeMSVSNHIRFFsrmkglRGKAVEQEVAKYLKMIELEDKanVAS----- 644
Cdd:COG4987 391 SITLGGVDLRDlDEDDLRRRIAVVPQRPHLFD-TTLRENLRLA------RPDATDEELWAALERVGLGDW--LAAlpdgl 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 645 --------SKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADvLGDRIA 716
Cdd:COG4987 462 dtwlgeggRRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGRTVLLITHRLAGLE-RMDRIL 540
|
250 260
....*....|....*....|....*.
gi 442617143 717 IMCDGELKCQGTSFFLKKQYGSGYRL 742
Cdd:COG4987 541 VLEDGRIVEQGTHEELLAQNGRYRQL 566
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
503-727 |
4.01e-27 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 111.66 E-value: 4.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 503 KAFETEPEGKHIGLQMRHLKKR-FGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT 581
Cdd:cd03267 8 KSYRVYSKEPGLIGSLKSLFKRkYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 582 NIEG--ARMSLgICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCC 659
Cdd:cd03267 88 RRKKflRRIGV-VFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAA 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 660 ALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEynRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1314-1550 |
8.62e-27 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 119.07 E-value: 8.62e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1314 PPPPPTEgqlDDDVANErerilqmssnelaTKNLvldrvTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMT 1393
Cdd:NF033858 255 PPRPADD---DDEPAIE-------------ARGL-----TMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLT 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1394 GDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGREVL----RIFcmlrGVQESRIRQLSEDLAKSFGFMK 1469
Cdd:NF033858 314 GLLPASEGEAWLFGQPVDAGDIATRRRVGYMSQAFSLYGELTVRQNLelhaRLF----HLPAAEIAARVAEMLERFDLAD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1470 HIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEaLCTRLA 1548
Cdd:NF033858 390 VADALPDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELsREDGVTIFISTHFMNEAE-RCDRIS 468
|
..
gi 442617143 1549 IM 1550
Cdd:NF033858 469 LM 470
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
1347-1554 |
8.90e-27 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 110.22 E-value: 8.90e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNS--IYKM-IGY 1423
Cdd:cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDI-TGLPPheRARAgIGY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1424 CPQFDALLDDLTGREVLRIfcmlrGVQESRIRQLSEDLAKSFG-F-----MKHidKQTHAYSGGNKRKLSTAIAVIGSPS 1497
Cdd:cd03224 80 VPEGRRIFPELTVEENLLL-----GAYARRRAKRKARLERVYElFprlkeRRK--QLAGTLSGGEQQMLAIARALMSRPK 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGR 209
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
517-727 |
9.55e-27 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 109.93 E-value: 9.55e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 517 QMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSdirtNIEGARMSLGICPQH 596
Cdd:cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK----PLEKERKRIGYVPQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 597 -NVLFD---------EMSVSNHIRFFSRMKglrgKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTK 666
Cdd:cd03235 77 rSIDRDfpisvrdvvLMGLYGHKGLFRRLS----KADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 667 VVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMcDGELKCQG 727
Cdd:cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRElRREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
516-723 |
1.09e-26 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 109.80 E-value: 1.09e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMV-VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI----RTNIEGARMSL 590
Cdd:cd03292 1 IEFINVTKTYPNGTAaLDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsdlrGRAIPYLRRKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 GICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 671 DEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03292 161 DEPTGNLDPDTTWEIMNLLKKiNKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
517-727 |
1.27e-26 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 108.29 E-value: 1.27e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 517 QMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT--NIEGARMsLGICP 594
Cdd:cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASlsPKELARK-IAYVP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QhnvlfdemsvsnhirffsrmkglrgkaveqevakYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:cd03214 80 Q----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 675 SGMDPSARRQLWDLLQQEK--VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:cd03214 126 SHLDIAHQIELLELLRRLAreRGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
1332-1554 |
2.10e-26 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 109.34 E-value: 2.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1332 ERILQMSSNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLE 1411
Cdd:cd03267 7 SKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPW 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1412 SNMNSIYKMIGYC-PQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAI 1490
Cdd:cd03267 87 KRRKKFLRRIGVVfGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1491 AVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYnRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
516-723 |
2.62e-26 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 115.12 E-value: 2.62e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR-TNIEGARmSLGIC- 593
Cdd:COG1129 5 LEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGEPVRfRSPRDAQ-AAGIAi 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 -PQHNVLFDEMSVSNHIrFFSRMKGLRG----KAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVV 668
Cdd:COG1129 84 iHQELNLVPNLSVAENI-FLGREPRRGGlidwRAMRRRARELLARLGLDIDPDTPVGDLSVAQQQLVEIARALSRDARVL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 669 LCDEPSSGMDPSARRQLWDL---LQQEkvGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:COG1129 163 ILDEPTASLTEREVERLFRIirrLKAQ--GVAIIYISHRLDEVFEIADRVTVLRDGRL 218
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1347-1569 |
2.72e-26 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 109.51 E-value: 2.72e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQ----FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMI 1421
Cdd:COG1124 2 LEVRNLSVSYGQggrrVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERPWSGEVTFDGRPVtRRRRKAFRRRV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GYCPQ--FDAL-----LDDLTgREVLRIfcMLRGVQESRIRQLSED--LAKSFgfmkhIDKQTHAYSGGNKRKLSTAIAV 1492
Cdd:COG1124 82 QMVFQdpYASLhprhtVDRIL-AEPLRI--HGLPDREERIAELLEQvgLPPSF-----LDRYPHQLSGGQRQRVAIARAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 1493 IGSPSVIYLDEPTTGMDPAARRQLWNMVCRIR-DSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFS 1569
Cdd:COG1124 154 ILEPELLLLDEPTSALDVSVQAEILNLLKDLReERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLLAGPK 231
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
520-728 |
1.10e-25 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 110.56 E-value: 1.10e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 520 HLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrtniegARMS-----LGICP 594
Cdd:PRK10851 7 NIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV------SRLHardrkVGFVF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QHNVLFDEMSVSNHIRF----FSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:PRK10851 81 QHYALFRHMTVFDNIAFgltvLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 671 DEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK10851 161 DEPFGALDAQVRKELRRWLRQlhEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
1347-1559 |
1.34e-25 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 106.57 E-value: 1.34e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGlsleSNMNSIY---KMIGY 1423
Cdd:cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG----RDVTDLPpkdRDIAM 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1424 CPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDE 1503
Cdd:cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1504 PTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIG 1559
Cdd:cd03301 157 PLSNLDAKLRVQMRAELKRLqQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
517-728 |
1.49e-25 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 109.89 E-value: 1.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 517 QMRHLKKRFGNKM----VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI----RTNIEGARM 588
Cdd:PRK11153 3 ELKNISKVFPQGGrtihALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtalsEKELRKARR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 589 SLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVV 668
Cdd:PRK11153 83 QIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVL 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 669 LCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK11153 163 LCDEATSALDPATTRSILELLKDinRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
516-728 |
1.73e-25 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 109.78 E-value: 1.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNK----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEG-----A 586
Cdd:COG1135 2 IELENLSKTFPTKggpvTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDL-TALSErelraA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 587 RMSLGICPQH-NvLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDT 665
Cdd:COG1135 81 RRKIGMIFQHfN-LLSSRTVAENVALPLEIAGVPKAEIRKRVAELLELVGLSDKADAYPSQLSGGQKQRVGIARALANNP 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 666 KVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHfmdEADV---LGDRIAIMCDGELKCQGT 728
Cdd:COG1135 160 KVLLCDEATSALDPETTRSILDLLKDinRELGLTIVLITH---EMDVvrrICDRVAVLENGRIVEQGP 224
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
516-731 |
2.65e-25 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 106.23 E-value: 2.65e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI---RTNIEGARMSLGI 592
Cdd:COG1126 2 IEIENLHKSFGDLEVLKGISLDVEKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTITVDGEDLtdsKKDINKLRRKVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQH-NvLFDEMSVSNHIrffsrM------KGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDT 665
Cdd:COG1126 82 VFQQfN-LFPHLTVLENV-----TlapikvKKMSKAEAEERAMELLERVGLADKADAYPAQLSGGQQQRVAIARALAMEP 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 666 KVVLCDEPSSGMDP-------SARRQlwdlLQQEkvGRTLLLTTHFMDEA-DVlGDRIAIMCDGELKCQGTS--FF 731
Cdd:COG1126 156 KVMLFDEPTSALDPelvgevlDVMRD----LAKE--GMTMVVVTHEMGFArEV-ADRVVFMDGGRIVEEGPPeeFF 224
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
516-703 |
2.79e-25 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 105.90 E-value: 2.79e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGN-KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT----NIEGARMSL 590
Cdd:COG2884 2 IRFENVSKRYPGgREALSDVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDLSRlkrrEIPYLRRRI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 GICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVTGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRPELLLA 161
|
170 180 190
....*....|....*....|....*....|....
gi 442617143 671 DEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTH 703
Cdd:COG2884 162 DEPTGNLDPETSWEIMELLEEiNRRGTTVLIATH 195
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
1347-1554 |
2.80e-25 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 105.65 E-value: 2.80e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQ----FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNSIYKM-- 1420
Cdd:cd03255 1 IELKNLSKTYGGggekVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDI-SKLSEKELAaf 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 ----IGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSP 1496
Cdd:cd03255 80 rrrhIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1497 SVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEEcEALCTRLAIMVNGE 1554
Cdd:cd03255 160 KIILADEPTGNLDSETGKEVMELLRELnKEAGTTIVVVTHDPEL-AEYADRIIELRDGK 217
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1304-1564 |
2.92e-25 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 111.92 E-value: 2.92e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1304 MFKIRQLISKPPPPPTEGQLDDDVANERERILQmssnelatknlvLDRVTKYY-----GQFMAVNQVSLCVQEVECFGLL 1378
Cdd:COG1123 230 ILAAPQALAAVPRLGAARGRAAPAAAAAEPLLE------------VRNLSKRYpvrgkGGVRAVDDVSLTLRRGETLGLV 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1379 GVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIYKMIGYCPQ--FDALLDDLT-GREV---LRIFCMLRG 1448
Cdd:COG1123 298 GESGSGKSTLARLLLGLLRPTSGSILFDGKDLtklsRRSLRELRRRVQMVFQdpYSSLNPRMTvGDIIaepLRLHGLLSR 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1449 VQ-ESRIRQLSED--LAKSfgfmkHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRD 1525
Cdd:COG1123 378 AErRERVAELLERvgLPPD-----LADRYPHELSGGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQR 452
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 442617143 1526 S-GKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:COG1123 453 ElGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTEEV 492
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
516-723 |
3.73e-25 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 103.28 E-value: 3.73e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIcpq 595
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 hnvlfdEMsvsnhirffsrmkglrgkaVEQevakylkmieledkanvasskLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03216 78 ------AM-------------------VYQ---------------------LSVGERQMVEIARALARNARLLILDEPTA 111
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 676 GMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03216 112 ALTPAEVERLFKVIRRLRAqGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
516-729 |
4.12e-25 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 105.83 E-value: 4.12e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNI---EGARMSLGI 592
Cdd:COG0410 4 LEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDI-TGLpphRIARLGIGY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSNHIrffsRMkGLRGKAVEQEVAKYLKMI-----ELEDKANVASSKLSGGMKRKLSVCCALCGDTKV 667
Cdd:COG0410 83 VPEGRRIFPSLTVEENL----LL-GAYARRDRAEVRADLERVyelfpRLKERRRQRAGTLSGGEQQMLAIGRALMSRPKL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 668 VLCDEPSSGMDPSARRQLWDLLQQEK-VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:COG0410 158 LLLDEPSLGLAPLIVEEIFEIIRRLNrEGVTILLVEQNARFALEIADRAYVLERGRIVLEGTA 220
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
1362-1506 |
4.83e-25 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 102.73 E-value: 4.83e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIY-KMIGYCPQFDALLDDLTGREVL 1440
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSPTEGTILLDGQDLTDDERKSLrKEIGYVFQDPQLFPRLTVRENL 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1441 RIFCMLRGVQESRIRQLSEDLAKSFGFM----KHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:pfam00005 81 RLGLLLKGLSKREKDARAEEALEKLGLGdladRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPTA 150
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
1349-1559 |
5.40e-25 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 104.54 E-value: 5.40e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESnmnsIYKMIGYCPQFD 1428
Cdd:cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEK----ERKRIGYVPQRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1429 ALLDD--LTGREVLRIFCMLRGVQESRIRQLSEDLA----KSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLD 1502
Cdd:cd03235 78 SIDRDfpISVRDVVLMGLYGHKGLFRRLSKADKAKVdealERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1503 EPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRlAIMVNGEFKCIG 1559
Cdd:cd03235 158 EPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR-VLLLNRTVVASG 213
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1361-1586 |
6.47e-25 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 107.48 E-value: 6.47e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGderI---SSGAAYVQGLS----LESNMNSIYKMIGycpQFDALLDD 1433
Cdd:COG4586 37 AVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTG---IlvpTSGEVRVLGYVpfkrRKEFARRIGVVFG---QRSQLWWD 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1434 LTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQThaysggnkRKLS--------TAIAVIGSPSVIYLDEPT 1505
Cdd:COG4586 111 LPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPV--------RQLSlgqrmrceLAAALLHRPKILFLDEPT 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1506 TGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGefKCI--GSTQHLKNKFSKGLILKIKVRRNL 1582
Cdd:COG4586 183 IGLDVVSKEAIREFLKEYnRERGTTILLTSHDMDDIEALCDRVIVIDHG--RIIydGSLEELKERFGPYKTIVLELAEPV 260
|
....
gi 442617143 1583 EALR 1586
Cdd:COG4586 261 PPLE 264
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
542-728 |
6.75e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 106.67 E-value: 6.75e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI---RTNIEGARMSLGIC---PQHNvLFDEmSVSNHIRFFSRM 615
Cdd:PRK13637 34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDItdkKVKLSDIRKKVGLVfqyPEYQ-LFEE-TIEKDIAFGPIN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 616 KGLRGKAVEQEVAKYLKMIEL--EDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQ--Q 691
Cdd:PRK13637 112 LGLSEEEIENRVKRAMNIVGLdyEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKelH 191
|
170 180 190
....*....|....*....|....*....|....*..
gi 442617143 692 EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13637 192 KEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
516-722 |
7.43e-25 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 108.77 E-value: 7.43e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMSLGICPQ 595
Cdd:PRK11607 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-SHVPPYQRPINMMFQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 442617143 676 GMDPSARRQLW----DLLqqEKVGRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:PRK11607 179 ALDKKLRDRMQlevvDIL--ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
516-728 |
1.09e-24 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 104.81 E-value: 1.09e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIC-- 593
Cdd:COG4674 11 LYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDLTGLDEHEIARLGIGrk 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 -------PQHNVlFD--EMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGD 664
Cdd:COG4674 91 fqkptvfEELTV-FEnlELALKGDRGVFASLFARLTAEERDRIEEVLETIGLTDKADRLAGLLSHGQKQWLEIGMLLAQD 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 665 TKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:COG4674 170 PKLLLLDEPVAGMTDAETERTAELLKSLAGKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGS 233
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
1347-1555 |
1.20e-24 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 103.74 E-value: 1.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGYCP 1425
Cdd:COG4619 1 LELEGLSFRVGGKPILSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDPPTSGEIYLDGKPLsAMPPPEWRRQVAYVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1426 QFDALLDDlTGREVLRIFCMLRGVQESRIRQLseDLAKSFGFMKHI-DKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEP 1504
Cdd:COG4619 81 QEPALWGG-TVRDNLPFPFQLRERKFDRERAL--ELLERLGLPPDIlDKPVERLSGGERQRLALIRALLLQPDVLLLDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1505 TTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:COG4619 158 TSALDPENTRRVEELLREYLAEeGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
519-718 |
1.20e-24 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 112.14 E-value: 1.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 519 RHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTA-----IINGSDIRTniegaRMSLGIC 593
Cdd:NF033858 270 RGLTMRFGDFTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAwlfgqPVDAGDIAT-----RRRVGYM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSV-SN---HIRFFsrmkGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVL 669
Cdd:NF033858 345 SQAFSLYGELTVrQNlelHARLF----HLPAAEIAARVAEMLERFDLADVADALPDSLPLGIRQRLSLAVAVIHKPELLI 420
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 670 CDEPSSGMDPSARRQLWDLL----QQEKVgrTLLLTTHFMDEADvLGDRIAIM 718
Cdd:NF033858 421 LDEPTSGVDPVARDMFWRLLielsREDGV--TIFISTHFMNEAE-RCDRISLM 470
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
515-728 |
1.61e-24 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 108.20 E-value: 1.61e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGA------RM 588
Cdd:PRK10070 28 GLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDI-AKISDAelrevrRK 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 589 SLGICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVV 668
Cdd:PRK10070 107 KIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDIL 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 669 LCDEPSSGMDPSARRQLWDLL--QQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK10070 187 LMDEAFSALDPLIRTEMQDELvkLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
1331-1665 |
1.70e-24 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 107.13 E-value: 1.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1331 RERILQMSSNELATKNLVldrvtKYYGQFMAVNQVSLCVQEVECFGLLGVNGAG--KTTTFKMMTGDErisSGAAYVQGL 1408
Cdd:NF000106 3 RKTISNGARNAVEVRGLV-----KHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GPD---AGRRPWRF* 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1409 SLESNMNSIYKMIG-YCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLS 1487
Cdd:NF000106 75 TWCANRRALRRTIG*HRPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1488 TAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNK 1567
Cdd:NF000106 155 LAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTK 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1568 FSkGLILKIK------VRRNLEALRQARLSGGYARNPDEQ----TVPAQMSQRDIDAVKEFVETEYPNSILQEEYQGILT 1637
Cdd:NF000106 235 VG-GRTLQIRpahaaeLDRMVGAIAQAGLDGIAGATADHEdgvvNVPIVSDEQLSAVVGMLGERGFTISGHQHPSAQL*E 313
|
330 340 350
....*....|....*....|....*....|
gi 442617143 1638 FYIPLTGVKWSRIF--GLMESNRDQLNVED 1665
Cdd:NF000106 314 VFLAITGQKTSEAAdgGPQDGPQDQQGVQD 343
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
516-722 |
2.28e-24 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 101.31 E-value: 2.28e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKM--VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGI 592
Cdd:cd03228 1 IEFKNVSFSYPGRPkpVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDlDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDeMSVSNHIrffsrmkglrgkaveqevakylkmieledkanvasskLSGGMKRKLSVCCALCGDTKVVLCDE 672
Cdd:cd03228 81 VPQDPFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDE 122
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 673 PSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADvLGDRIAIMCDGE 722
Cdd:cd03228 123 ATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
1347-1554 |
2.34e-24 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 101.88 E-value: 2.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGlslesnmnsiykmigycpq 1426
Cdd:cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG------------------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 fdALLDDLTGRevlrifcmlRGVQESRIRQLSEDlaksFGFMKH---IDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDE 1503
Cdd:cd03229 62 --EDLTDLEDE---------LPPLRRRIGMVFQD----FALFPHltvLENIALGLSGGQQQRVALARALAMDPDVLLLDE 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1504 PTTGMDPAARRQLWNMVCRIRD-SGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03229 127 PTSALDPITRREVRALLKSLQAqLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
530-728 |
3.34e-24 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 104.39 E-value: 3.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 530 VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEG---ARMSLGICPQH--NVLFDEmS 604
Cdd:PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSlleVRKTVGIVFQNpdDQLFAP-T 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 605 VSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQ 684
Cdd:PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 442617143 685 LWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13639 176 IMKLLYDlNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
891-1294 |
4.49e-24 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 105.55 E-value: 4.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 891 KLLLLIQNIMPVFFVVVTILIIKTQGTFQElkpitisltqyPLAVTVLDRSNVQNGTGYEiankyEDLARSYGSNYGLEL 970
Cdd:pfam12698 1 KSFLIITLLLPILLILLLGLIFSNAVNDPE-----------ELPVAVVDEDNSSLSRQLV-----RALEASPTVNLVQYV 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 971 TGTQGFEDYILDLGKTIQVRINSRYL-VAATITESKITAWLNNQALHTAPLTVNMVHNAIADKL---FGSSVKIQVTNAP 1046
Cdd:pfam12698 65 DSEEEAKEALKNGKIDGLLVIPKGFSkDLLKGESATVTVYINSSNLLVSKLILNALQSLLQQLNasaLVLLLEALSTSAP 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1047 LPYTTSTLLSQLstgNNLGTQLASNL-CFCMCFVSSIYILFLIKERESRAKLLQFVGGVKVWTFWLSQFICDFASYIVTA 1125
Cdd:pfam12698 145 IPVESTPLFNPQ---SGYAYYLVGLIlMIIILIGAAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGDFLVGLLQL 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1126 LIvvITIVCFQEtgLSTFGELGRYYLLLLLFGFAVLPFIYIMSLFFREPATGFARVSIVNIFCgMALFIVVVVMSselfd 1205
Cdd:pfam12698 222 LI--ILLLLFGI--GIPFGNLGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIGIVILLL-SGFFGGLFPLE----- 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1206 tkDTADILGWIFRIFPHFSLAMSLNKVYTNtatrnacakagalppillcelvpqccnlkpYFAWEepgVLPETVYMAVTG 1285
Cdd:pfam12698 292 --DPPSFLQWIFSIIPFFSPIDGLLRLIYG------------------------------DSLWE---IAPSLIILLLFA 336
|
....*....
gi 442617143 1286 VVFFLIIIV 1294
Cdd:pfam12698 337 VVLLLLALL 345
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
526-724 |
4.76e-24 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 101.56 E-value: 4.76e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRtNIEGARMSlGICPQH--NVLFDEm 603
Cdd:cd03226 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK-AKERRKSI-GYVMQDvdYQLFTD- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 604 SVSNHIRFFSRMKGlrgkAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARR 683
Cdd:cd03226 88 SVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNME 163
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442617143 684 QLWDLLQQE-KVGRTLLLTTHFMDEADVLGDRIAIMCDGELK 724
Cdd:cd03226 164 RVGELIRELaAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
516-723 |
5.85e-24 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 102.93 E-value: 5.85e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTT---TISMLTGMFP--PTSGTAIINGSDI---RTNIEGAR 587
Cdd:PRK14239 6 LQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTllrSINRMNDLNPevTITGSIVYNGHNIyspRTDTVDLR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 588 MSLGICPQHNVLFdEMSVSNHIRFFSRMKGLRGKAV-EQEVAKYLKMI----ELEDKANVASSKLSGGMKRKLSVCCALC 662
Cdd:PRK14239 86 KEIGMVFQQPNPF-PMSIYENVVYGLRLKGIKDKQVlDEAVEKSLKGAsiwdEVKDRLHDSALGLSGGQQQRVCIARVLA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 663 GDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
1347-1550 |
9.22e-24 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 101.39 E-value: 9.22e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYG----QFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLesnmNSIYKMIG 1422
Cdd:cd03293 1 LEVRNVSKTYGggggAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPV----TGPGPDRG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLD 1502
Cdd:cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 1503 EPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIM 1550
Cdd:cd03293 157 EPFSALDALTREQLQEELLDIwRETGKTVLLVTHDIDEAVFLADRVVVL 205
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
1347-1554 |
9.87e-24 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 101.43 E-value: 9.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYY----GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG---LSLESNMNSIY- 1418
Cdd:cd03257 2 LEVKNLSVSFptggGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGkdlLKLSRRLRKIRr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1419 KMIGYCPQ------------FDALlddltgREVLRIFCMLRGVQESRIRQLSE----DLAKSFgfmkhIDKQTHAYSGGN 1482
Cdd:cd03257 82 KEIQMVFQdpmsslnprmtiGEQI------AEPLRIHGKLSKKEARKEAVLLLlvgvGLPEEV-----LNRYPHELSGGQ 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1483 KRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEElGLTLLFITHDLGVVAKIADRVAVMYAGK 223
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
1347-1564 |
1.15e-23 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 101.61 E-value: 1.15e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYY-GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTgdeRI---SSGAAYVQGLS-LESNMNSIYKMI 1421
Cdd:cd03295 1 IEFENVTKRYgGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN---RLiepTSGEIFIDGEDiREQDPVELRRKI 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGF--MKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVI 1499
Cdd:cd03295 78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLdpAEFADRYPHELSGGQQQRVGVARALAADPPLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1500 YLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:cd03295 158 LMDEPFGALDPITRDQLQEEFKRLqQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
528-728 |
1.35e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 102.38 E-value: 1.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 528 KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGARMSLGICPQH-NVLFDEMSV 605
Cdd:PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIsKENLKEIRKKIGIIFQNpDNQFIGATV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 606 SNHIRFfsrmkGLRGKAVE--------QEVAKYLKMIELEDKanvASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGM 677
Cdd:PRK13632 102 EDDIAF-----GLENKKVPpkkmkdiiDDLAKKVGMEDYLDK---EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 678 DPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEAdVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13632 174 DPKGKREIKKIMVdlRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGK 225
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1347-1560 |
1.42e-23 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 99.04 E-value: 1.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQglslesnmnsiykmigycpq 1426
Cdd:cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD-------------------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 fdallddltGREVLRifcmlRGVQESR------IRQLsedlaksfgfmkhidkqthaySGGNKRKLSTAIAVIGSPSVIY 1500
Cdd:cd03216 61 ---------GKEVSF-----ASPRDARragiamVYQL---------------------SVGERQMVEIARALARNARLLI 105
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1501 LDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGefKCIGS 1560
Cdd:cd03216 106 LDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDG--RVVGT 163
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
516-718 |
3.11e-23 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 101.09 E-value: 3.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGN----KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTniEGARMslG 591
Cdd:COG4525 4 LTVRHVSVRYPGggqpQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG--PGADR--G 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:COG4525 80 VVFQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAADPRFLLMD 159
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 672 EPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIM 718
Cdd:COG4525 160 EPFGALDALTREQMQELLLDvwQRTGKGVFLITHSVEEALFLATRLVVM 208
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1342-1564 |
3.26e-23 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 105.76 E-value: 3.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1342 LATKNLvldRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG----DERISsGAAYVQGLSL-ESNMNS 1416
Cdd:COG1123 5 LEVRDL---SVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGllphGGRIS-GEVLLDGRDLlELSEAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1417 IYKMIGYCPQ-FDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGS 1495
Cdd:COG1123 81 RGRRIGMVFQdPMTQLNPVTVGDQIAEALENLGLSRAEARARVLELLEAVGLERRLDRYPHQLSGGQRQRVAIAMALALD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1496 PSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:COG1123 161 PDLLIADEPTTALDVTTQAEILDLLRELqRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEI 230
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
1349-1564 |
5.27e-23 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 99.58 E-value: 5.27e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQ----FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIYKM 1420
Cdd:cd03258 4 LKNVSKVFGDtggkVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLtllsGKELRKARRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 IGYCPQFDALLDDLTGRE----VLRIFCMLRGVQESRIRQLSE--DLAksfgfmkhiDKQtHAY----SGGNKRKLSTAI 1490
Cdd:cd03258 84 IGMIFQHFNLLSSRTVFEnvalPLEIAGVPKAEIEERVLELLElvGLE---------DKA-DAYpaqlSGGQKQRVGIAR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1491 AVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:cd03258 154 ALANNPKVLLCDEATSALDPETTQSILALLRDInRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
1347-1554 |
6.60e-23 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 99.29 E-value: 6.60e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMnSIYKM----IG 1422
Cdd:COG0410 4 LEVENLHAGYGGIHVLHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLPPRSGSIRFDGEDI-TGL-PPHRIarlgIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQFDALLDDLTGREVLRIFCMLRGVQES-----------------RIRQLSEDLaksfgfmkhidkqthaySGGNKRK 1485
Cdd:COG0410 82 YVPEGRRIFPSLTVEENLLLGAYARRDRAEvradlervyelfprlkeRRRQRAGTL-----------------SGGEQQM 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1486 LSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:COG0410 145 LAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRLNREGVTILLVEQNARFALEIADRAYVLERGR 213
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
539-727 |
6.67e-23 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 98.52 E-value: 6.67e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 539 FEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING-----SDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFfs 613
Cdd:cd03297 21 LNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGtvlfdSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAF-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 614 RMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-- 691
Cdd:cd03297 99 GLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQik 178
|
170 180 190
....*....|....*....|....*....|....*.
gi 442617143 692 EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:cd03297 179 KNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1352-1566 |
1.38e-22 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 98.51 E-value: 1.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1352 VTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIYKMIGYCPQF 1427
Cdd:COG1127 11 LTKSFGDRVVLDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLRPDSGEILVDGQDItglsEKELYELRRRIGMLFQG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1428 DALLDDLTGRE-V---LRifcMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDE 1503
Cdd:COG1127 91 GALFDSLTVFEnVafpLR---EHTDLSEAEIRELVLEKLELVGLPGAADKMPSELSGGMRKRVALARALALDPEILLYDE 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1504 PTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKN 1566
Cdd:COG1127 168 PTAGLDPITSAVIDELIRELRDElGLTSVVVTHDLDSAFAIADRVAVLADGKIIAEGTPEELLA 231
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
516-738 |
1.47e-22 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 101.33 E-value: 1.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARmslGICP- 594
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR---DICMv 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 -QHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEP 673
Cdd:PRK11432 84 fQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 674 SSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGS 738
Cdd:PRK11432 164 LSNLDANLRRSMREKIRelQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
516-743 |
2.15e-22 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 104.53 E-value: 2.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFG--NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGI 592
Cdd:COG2274 474 IELENVSFRYPgdSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPTSGRILIDGIDLRQiDPASLRRQIGV 553
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFdEMSVSNHIRFFsrmkglRGKAVEQEVAKYLKMIELEDKAN---------VAS--SKLSGGMKRKLSVCCAL 661
Cdd:COG2274 554 VLQDVFLF-SGTIRENITLG------DPDATDEEIIEAARLAGLHDFIEalpmgydtvVGEggSNLSGGQRQRLAIARAL 626
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 662 CGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTH---FMDEAdvlgDRIAIMCDGELKCQGTSFFLKKQYGS 738
Cdd:COG2274 627 LRNPRILILDEATSALDAETEAIILENLRRLLKGRTVIIIAHrlsTIRLA----DRIIVLDKGRIVEDGTHEELLARKGL 702
|
....*
gi 442617143 739 GYRLI 743
Cdd:COG2274 703 YAELV 707
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1347-1564 |
2.94e-22 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 97.66 E-value: 2.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYV--QGLSLESNMNSIYKMIGYC 1424
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIddEDISLLPLHARARRGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQ----------FDALLDDLTGREVLrifcmlrgVQESRiRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIG 1494
Cdd:PRK10895 84 PQeasifrrlsvYDNLMAVLQIRDDL--------SAEQR-EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAA 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1495 SPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEI 224
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1330-1562 |
3.08e-22 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 102.96 E-value: 3.08e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1330 ERERILQMSSNELATKNlvldrVTKYY-----GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAY 1404
Cdd:TIGR03269 268 EKECEVEVGEPIIKVRN-----VSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVN 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1405 VQGLSLESNMNS--------IYKMIGYCPQFDAL------LDDLT---GREVLRIFCMLRGVQESRIRQLSEDLAKSFgf 1467
Cdd:TIGR03269 343 VRVGDEWVDMTKpgpdgrgrAKRYIGILHQEYDLyphrtvLDNLTeaiGLELPDELARMKAVITLKMVGFDEEKAEEI-- 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1468 mkhIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTR 1546
Cdd:TIGR03269 421 ---LDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEmEQTFIIVSHDMDFVLDVCDR 497
|
250
....*....|....*.
gi 442617143 1547 LAIMVNGEFKCIGSTQ 1562
Cdd:TIGR03269 498 AALMRDGKIVKIGDPE 513
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
516-735 |
3.10e-22 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 98.77 E-value: 3.10e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKM-VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI---RTNIEGARMSLG 591
Cdd:PRK13636 6 LKVEELNYNYSDGThALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIdysRKGLMKLRESVG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQH--NVLFdEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVL 669
Cdd:PRK13636 86 MVFQDpdNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 670 CDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT--SFFLKKQ 735
Cdd:PRK13636 165 LDEPTAGLDPMGVSEIMKLLVemQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNpkEVFAEKE 234
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
542-727 |
5.98e-22 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 96.02 E-value: 5.98e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMSLGICPQHNVLFDEMSVSNHIRFfSRMKGLRGK 621
Cdd:cd03298 25 EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV-TAAPPADRPVSMLFQENNLFAHLTVEQNVGL-GLSPGLKLT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 622 AVEQE-VAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDL---LQQEKvGRT 697
Cdd:cd03298 103 AEDRQaIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLvldLHAET-KMT 181
|
170 180 190
....*....|....*....|....*....|
gi 442617143 698 LLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:cd03298 182 VLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
1349-1566 |
9.39e-22 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 96.03 E-value: 9.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIYKMIGYC 1424
Cdd:cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIsglsEAELYRLRRRMGML 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQFDALLDDLTGRE-V---LRifcMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIY 1500
Cdd:cd03261 83 FQSGALFDSLTVFEnVafpLR---EHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1501 LDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKN 1566
Cdd:cd03261 160 YDEPTAGLDPIASGVIDDLIRSLKKElGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
516-728 |
9.56e-22 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 96.60 E-value: 9.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSdirtNIEG------ARMS 589
Cdd:PRK11300 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQ----HIEGlpghqiARMG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 590 LGICPQHNVLFDEMS------VSNH----IRFFS---RMKGLR---GKAVEQeVAKYLKMIELEDKANVASSKLSGGMKR 653
Cdd:PRK11300 82 VVRTFQHVRLFREMTvienllVAQHqqlkTGLFSgllKTPAFRraeSEALDR-AATWLERVGLLEHANRQAGNLAYGQQR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 654 KLSVccALCGDTK--VVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK11300 161 RLEI--ARCMVTQpeILMLDEPAAGLNPKETKELDELIAElrNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
1349-1538 |
1.27e-21 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 95.12 E-value: 1.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQ-FMAVNQVSLCVQEVE-CFgLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNS--IYKM---I 1421
Cdd:COG2884 4 FENVSKRYPGgREALSDVSLEIEKGEfVF-LTGPSGAGKSTLLKLLYGEERPTSGQVLVNGQDL-SRLKRreIPYLrrrI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GYCPQfDA-LLDDLTGRE----VLRIfcmlRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSP 1496
Cdd:COG2884 82 GVVFQ-DFrLLPDRTVYEnvalPLRV----TGKSRKEIRRRVREVLDLVGLSDKAKALPHELSGGEQQRVAIARALVNRP 156
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442617143 1497 SVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSME 1538
Cdd:COG2884 157 ELLLADEPTGNLDPETSWEIMELLEEINRRGTTVLIATHDLE 198
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
526-728 |
1.42e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 96.80 E-value: 1.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGARMSLGICPQH--NVLFDE 602
Cdd:PRK13652 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPItKENIREVRKFVGLVFQNpdDQIFSP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 603 mSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSAR 682
Cdd:PRK13652 95 -TVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGV 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 442617143 683 RQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13652 174 KELIDFLNDlpETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGT 221
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
546-739 |
1.81e-21 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 102.12 E-value: 1.81e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 546 LLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTniegARMSLGICPQ---------HNvLFDEMSVSNHIRFFSRMK 616
Cdd:NF033858 32 LIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMAD----ARHRRAVCPRiaympqglgKN-LYPTLSVFENLDFFGRLF 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 617 GLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDL---LQQEK 693
Cdd:NF033858 107 GQDAAERRRRIDELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELidrIRAER 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 442617143 694 VGRTLLLTTHFMDEADVLgDRIAIMCDGELKCQGTSFFLKKQYGSG 739
Cdd:NF033858 187 PGMSVLVATAYMEEAERF-DWLVAMDAGRVLATGTPAELLARTGAD 231
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
1362-1554 |
1.83e-21 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 93.77 E-value: 1.83e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG--DERISSGAAYVQGLSLEsnMNSIYKMIGYCPQFDALLDDLTGREV 1439
Cdd:cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPLD--KRSFRKIIGYVPQDDILHPTLTVRET 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1440 LRIFCMLRGVqesrirqlsedlaksfgfmkhidkqthaySGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNM 1519
Cdd:cd03213 103 LMFAAKLRGL-----------------------------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153
|
170 180 190
....*....|....*....|....*....|....*.
gi 442617143 1520 VCRIRDSGKSIVLTSHS-MEECEALCTRLAIMVNGE 1554
Cdd:cd03213 154 LRRLADTGRTIICSIHQpSSEIFELFDKLLLLSQGR 189
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
520-727 |
2.03e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 95.96 E-value: 2.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 520 HLKKRFGNKmVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGARMSLGICPQH-- 596
Cdd:PRK13647 11 HFRYKDGTK-ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVnAENEKWVRSKVGLVFQDpd 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 597 NVLFdEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSG 676
Cdd:PRK13647 90 DQVF-SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 677 MDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK13647 169 LDPRGQETLMEILDRlHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
516-707 |
2.20e-21 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 95.15 E-value: 2.20e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSG-TAIING--------SDIRTNIeG- 585
Cdd:COG1119 4 LELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGnDVRLFGerrggedvWELRKRI-Gl 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 586 --ARMSLGICPQHNVLfdEMSVSNhirFFSRMkGLRGKAVEQEVAK---YLKMIELEDKANVASSKLSGGMKRKLSVCCA 660
Cdd:COG1119 83 vsPALQLRFPRDETVL--DVVLSG---FFDSI-GLYREPTDEQRERareLLELLGLAHLADRPFGTLSQGEQRRVLIARA 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 661 LCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDE 707
Cdd:COG1119 157 LVKDPELLILDEPTAGLDLGARELLLALLDKlaAEGAPTLVLVTHHVEE 205
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
516-723 |
2.77e-21 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 92.88 E-value: 2.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLkkrfGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIC-- 593
Cdd:cd03215 5 LEVRGL----SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAyv 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 ---PQHNVLFDEMSVSNHIrffsrmkglrgkaveqevakylkmieledkanVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:cd03215 81 pedRKREGLVLDLSVAENI--------------------------------ALSSLLSGGNQQKVVLARWLARDPRVLIL 128
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 671 DEPSSGMDPSARRQLWDLLQQEK-VGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03215 129 DEPTRGVDVGAKAEIYRLIRELAdAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1345-1561 |
2.97e-21 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 94.76 E-value: 2.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1345 KNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG-----LSLESNMNSiyk 1419
Cdd:COG1134 25 KELLLRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNGrvsalLELGAGFHP--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1420 migycpqfdalldDLTGREVLRIFCMLRGVQESRIRQLSEDLAkSF---GfmKHIDKQTHAYSGGNKRKLSTAIAVIGSP 1496
Cdd:COG1134 102 -------------ELTGRENIYLNGRLLGLSRKEIDEKFDEIV-EFaelG--DFIDQPVKTYSSGMRARLAFAVATAVDP 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1497 SVIYLDEPTTGMDPAARRQlwnmvCR-----IRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGST 1561
Cdd:COG1134 166 DILLVDEVLAVGDAAFQKK-----CLarireLRESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDP 230
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
1347-1562 |
3.28e-21 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 94.73 E-value: 3.28e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNS--IYKMIGYC 1424
Cdd:COG1120 2 LEAENLSVGYGGRPVLDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLKPSSGEVLLDGRDL-ASLSRreLARRIAYV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQFDALLDDLTGREVLRifcMLRGVQESRIRQLS-EDLAK------SFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPS 1497
Cdd:COG1120 81 PQEPPAPFGLTVRELVA---LGRYPHLGLFGRPSaEDREAveealeRTGLEHLADRPVDELSGGERQRVLIARALAQEPP 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQ 1562
Cdd:COG1120 158 LLLLDEPTSHLDLAHQLEVLELLRRLaRERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGPPE 223
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
516-727 |
3.44e-21 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 99.47 E-value: 3.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR--TNIEGARMSLGIC 593
Cdd:PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNklDHKLAAQLGIGII 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSVSNHIrFFSRM--KGLRG------KAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDT 665
Cdd:PRK09700 86 YQELSVIDELTVLENL-YIGRHltKKVCGvniidwREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 666 KVVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK09700 165 KVIIMDEPTSSLTNKEVDYLFLIMNQlRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
1347-1567 |
4.01e-21 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 94.23 E-value: 4.01e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL------ESNMNSIYkm 1420
Cdd:cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDItnlpphKRPVNTVF-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 igycpQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIY 1500
Cdd:cd03300 79 -----QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLL 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 1501 LDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNK 1567
Cdd:cd03300 154 LDEPLGALDLKLRKDMQLELKRLQKElGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
516-718 |
4.77e-21 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 95.89 E-value: 4.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRF----GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPP---TSGTAIINGSDIRT------- 581
Cdd:COG0444 2 LEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPpgiTSGEILFDGEDLLKlsekelr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 582 NIEGARMSLgIcPQhnvlfDEMS-------VSNHIR-FFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASS---KLSGG 650
Cdd:COG0444 82 KIRGREIQM-I-FQ-----DPMTslnpvmtVGDQIAePLRIHGGLSKAEARERAIELLERVGLPDPERRLDRyphELSGG 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 651 MKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIM 718
Cdd:COG0444 155 MRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKdlQRELGLAILFITHDLGVVAEIADRVAVM 224
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
531-721 |
5.06e-21 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 93.68 E-value: 5.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 531 VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMslgICPQHNVLFDEMSVSNHIR 610
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI-TEPGPDRM---VVFQNYSLLPWLTVRENIA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 611 FF--SRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDL 688
Cdd:TIGR01184 77 LAvdRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156
|
170 180 190
....*....|....*....|....*....|....*
gi 442617143 689 LQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDG 721
Cdd:TIGR01184 157 LMQiwEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
1349-1559 |
6.06e-21 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 92.11 E-value: 6.06e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESnMNS--IYKMIGYCPQ 1426
Cdd:cd03214 2 VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS-LSPkeLARKIAYVPQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 fdALlddltgrEVLRIfcmlrgvqesrirqlsEDLAksfgfmkhiDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:cd03214 81 --AL-------ELLGL----------------AHLA---------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTS 126
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1507 GMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIG 1559
Cdd:cd03214 127 HLDIAHQIELLELLRRLaRERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
527-728 |
9.84e-21 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 94.38 E-value: 9.84e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 527 NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR--TNIEGARMSLGICPQH--NVLFDE 602
Cdd:PRK13633 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSdeENLWDIRNKAGMVFQNpdNQIVAT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 603 MsVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSAR 682
Cdd:PRK13633 102 I-VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGR 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 442617143 683 RQLWDLLQQ--EKVGRTLLLTTHFMDEAdVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13633 181 REVVNTIKElnKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGT 227
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
516-742 |
1.38e-20 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 92.65 E-value: 1.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNI--EGARMSLGIC 593
Cdd:PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPlhARARRGIGYL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSVSNHIRFFSRM-KGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDE 672
Cdd:PRK10895 84 PQEASIFRRLSVYDNLMAVLQIrDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 673 PSSGMDPSARRQLWDLLQQEK-VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT------SFFLKKQY-GSGYRL 742
Cdd:PRK10895 164 PFAGVDPISVIDIKRIIEHLRdSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTpteilqDEHVKRVYlGEDFRL 241
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
487-703 |
1.60e-20 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 97.43 E-value: 1.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 487 TGVEDIPNGHVEQRDPKAfETEPEGkHIGLQMRHLKKRF-GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMF 565
Cdd:TIGR02868 308 VEVLDAAGPVAEGSAPAA-GAVGLG-KPTLELRDLSAGYpGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 566 PPTSGTAIINGSDIRTNIEGA-RMSLGICPQHNVLFDEmSVSNHIRFfsrmkgLRGKAVEQEVAKYLKMIELED------ 638
Cdd:TIGR02868 386 DPLQGEVTLDGVPVSSLDQDEvRRRVSVCAQDAHLFDT-TVRENLRL------ARPDATDEELWAALERVGLADwlralp 458
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 639 -----KANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTH 703
Cdd:TIGR02868 459 dgldtVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
544-728 |
1.61e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 94.03 E-value: 1.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 544 TVLLGHNGAGKTTTISMLTGMFPPTSGTA-----IINGSDIRTNIEGARMSLGICPQ--HNVLFDEmSVSNHIRFFSRMK 616
Cdd:PRK13643 35 TALIGHTGSGKSTLLQHLNGLLQPTEGKVtvgdiVVSSTSKQKEIKPVRKKVGVVFQfpESQLFEE-TVLKDVAFGPQNF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 617 GLRGKAVEQEVAKYLKMIELEDKANVASS-KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-EKV 694
Cdd:PRK13643 114 GIPKEKAEKIAAEKLEMVGLADEFWEKSPfELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESiHQS 193
|
170 180 190
....*....|....*....|....*....|....
gi 442617143 695 GRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13643 194 GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
1345-1554 |
2.05e-20 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 91.83 E-value: 2.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1345 KNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGlslesnmnSIYKMIGYC 1424
Cdd:cd03220 21 KKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG--------RVSSLLGLG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQFDAlldDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEP 1504
Cdd:cd03220 93 GGFNP---ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 1505 TTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03220 170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGK 219
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
516-728 |
2.08e-20 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 92.77 E-value: 2.08e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR--TNIEGARmSLGIC 593
Cdd:PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISmlSSRQLAR-RLALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSV--------SNHIRFFSRMKGLRGKAVEQEVAKylkmIELEDKANVASSKLSGGMKRKLSVCCALCGDT 665
Cdd:PRK11231 82 PQHHLTPEGITVrelvaygrSPWLSLWGRLSAEDNARVNQAMEQ----TRINHLADRRLTDLSGGQRQRAFLAMVLAQDT 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 666 KVVLCDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTqGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
1352-1567 |
2.64e-20 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 92.02 E-value: 2.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1352 VTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNSIYKMIGYCPQFDALL 1431
Cdd:cd03296 8 VSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDA-TDVPVQERNVGFVFQHYALF 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 DDLTGREV----LRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTG 1507
Cdd:cd03296 87 RHMTVFDNvafgLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGA 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 1508 MDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNK 1567
Cdd:cd03296 167 LDAKVRKELRRWLRRLHDElHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1347-1555 |
3.22e-20 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 96.24 E-value: 3.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG--LSLESNMNSIYKMIGYC 1424
Cdd:COG1129 5 LEMRGISKSFGGVKALDGVSLELRPGEVHALLGENGAGKSTLMKILSGVYQPDSGEILLDGepVRFRSPRDAQAAGIAII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQFDALLDDLT-------GREVLRifcmlRG-VQESRIRQLSEDLAKSFGFmkHIDKQTHAysggnkRKLSTA------I 1490
Cdd:COG1129 85 HQELNLVPNLSvaeniflGREPRR-----GGlIDWRAMRRRARELLARLGL--DIDPDTPV------GDLSVAqqqlveI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1491 --AVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:COG1129 152 arALSRDARVLILDEPTASLTEREVERLFRIIRRLKAQGVAIIYISHRLDEVFEIADRVTVLRDGRL 218
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1347-1554 |
3.26e-20 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 91.26 E-value: 3.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQ----FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMN----SIY 1418
Cdd:COG1136 5 LELRNLTKSYGTgegeVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVLIDGQDI-SSLSerelARL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1419 --KMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSP 1496
Cdd:COG1136 84 rrRHIGFVFQFFNLLPELTALENVALPLLLAGVSRKERRERARELLERVGLGDRLDHRPSQLSGGQQQRVAIARALVNRP 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1497 SVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSmEECEALCTRLAIMVNGE 1554
Cdd:COG1136 164 KLILADEPTGNLDSKTGEEVLELLRELnRELGTTIVMVTHD-PELAARADRVIRLRDGR 221
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
544-728 |
3.38e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 92.78 E-value: 3.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 544 TVLLGHNGAGKTTTISMLTGMFPPTSGTAIInGSDIRT------NIEGARMSLGIC---PQHNvLFDEmSVSNHIRFFSR 614
Cdd:PRK13634 36 VAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITagkknkKLKPLRKKVGIVfqfPEHQ-LFEE-TVEKDICFGPM 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 615 MKGLRGKAVEQEVAKYLKMIELEDKANVASS-KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDL---LQ 690
Cdd:PRK13634 113 NFGVSEEDAKQKAREMIELVGLPEELLARSPfELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMfykLH 192
|
170 180 190
....*....|....*....|....*....|....*...
gi 442617143 691 QEKvGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13634 193 KEK-GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1347-1554 |
4.26e-20 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 91.68 E-value: 4.26e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGA-AYVQGLSLES-NMNSIYKMIGYC 1424
Cdd:COG1119 4 LELRNVTVRRGGKTILDDISWTVKPGEHWAILGPNGAGKSTLLSLITGDLPPTYGNdVRLFGERRGGeDVWELRKRIGLV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 -PQF-DALLDDLTGREV--------LRIFCMLRGVQESRIRQLsedlAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIG 1494
Cdd:COG1119 84 sPALqLRFPRDETVLDVvlsgffdsIGLYREPTDEQRERAREL----LELLGLAHLADRPFGTLSQGEQRRVLIARALVK 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 1495 SPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:COG1119 160 DPELLILDEPTAGLDLGARELLLALLDKLaAEGAPTLVLVTHHVEEIPPGITHVLLLKDGR 220
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1342-1603 |
5.15e-20 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 95.62 E-value: 5.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1342 LATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG---------LSLES 1412
Cdd:PRK09700 1 MATPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNinynkldhkLAAQL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1413 NMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAV 1492
Cdd:PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1493 IGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFskgl 1572
Cdd:PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDD---- 236
|
250 260 270
....*....|....*....|....*....|.
gi 442617143 1573 ILKIKVRRNLEALRQARLSGgyARNPDEQTV 1603
Cdd:PRK09700 237 IVRLMVGRELQNRFNAMKEN--VSNLAHETV 265
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
517-728 |
5.49e-20 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 91.30 E-value: 5.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 517 QMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT--NIEGARMsLGICP 594
Cdd:COG4604 3 EIKNVSKRYGGKVVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLPPDSGEVLVDGLDVATtpSRELAKR-LAILR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QHNVLFDEMSVSNHIRF--FSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDE 672
Cdd:COG4604 82 QENHINSRLTVRELVAFgrFPYSKGRLTAEDREIIDEAIAYLDLEDLADRYLDELSGGQRQRAFIAMVLAQDTDYVLLDE 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 673 PSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:COG4604 162 PLNNLDMKHSVQMMKLLRRlaDELGKTVVIVLHDINFASCYADHIVAMKDGRVVAQGT 219
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
530-727 |
7.54e-20 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 89.96 E-value: 7.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 530 VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTnIEGA--RMSLGICPQHNVLFDEmSVSN 607
Cdd:cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQ-LDPAdlRRNIGYVPQDVTLFYG-TLRD 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 608 HIRFFSR-------MKGLRGKAVEQEVAKYLKMIELEDKANVASskLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPS 680
Cdd:cd03245 97 NITLGAPladderiLRAAELAGVTDFVNKHPNGLDLQIGERGRG--LSGGQRQAVALARALLNDPPILLLDEPTSAMDMN 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 442617143 681 ARRQLWDLLQQEKVGRTLLLTTHFMdEADVLGDRIAIMCDGELKCQG 727
Cdd:cd03245 175 SEERLKERLRQLLGDKTLIIITHRP-SLLDLVDRIIVMDSGRIVADG 220
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
533-737 |
8.43e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 91.34 E-value: 8.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 533 GLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-----NIEGARMSLGICPQ--HNVLFDEmSV 605
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITStsknkDIKQIRKKVGLVFQfpESQLFEE-TV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 606 SNHIRFFSRMKGLRGKAVEQEVAKYLKMIEL-EDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQ 684
Cdd:PRK13649 104 LKDVAFGPQNFGVSQEEAEALAREKLALVGIsESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 685 LWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT--------SFFLKKQYG 737
Cdd:PRK13649 184 LMTLFKKlHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKpkdifqdvDFLEEKQLG 245
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
1354-1556 |
8.47e-20 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 89.62 E-value: 8.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1354 KYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNsiYKMIGYCPQ--FDALL 1431
Cdd:cd03226 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKER--RKSIGYVMQdvDYQLF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 DDLTGREvLRIFCMLRGVQESRIRQLSEDLaKSFGFMkhiDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPA 1511
Cdd:cd03226 86 TDSVREE-LLLGLKELDAGNEQAETVLKDL-DLYALK---ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 442617143 1512 ARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFK 1556
Cdd:cd03226 161 NMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
522-727 |
1.19e-19 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 89.64 E-value: 1.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 522 KKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPP---TSGTAIINGSDIrtNIEGARMSLGICPQHNV 598
Cdd:cd03234 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGggtTSGQILFNGQPR--KPDQFQKCVAYVRQDDI 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 599 LFDEMSVSNHIRFFSRMKGLR--GKAVEQEVAKYLKMIELEDK--ANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:cd03234 92 LLPGLTVRETLTYTAILRLPRksSDAIRKKRVEDVLLRDLALTriGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPT 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 675 SGMDPSARRQLWDLLQQ-EKVGRTLLLTTHfMDEADV--LGDRIAIMCDGELKCQG 727
Cdd:cd03234 172 SGLDSFTALNLVSTLSQlARRNRIVILTIH-QPRSDLfrLFDRILLLSSGEIVYSG 226
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
490-724 |
1.28e-19 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 94.75 E-value: 1.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 490 EDIPNGHVEQRDPKAF----ETEPEGKHIgLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMF 565
Cdd:COG0488 287 EKLEREEPPRRDKTVEirfpPPERLGKKV-LELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGEL 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 566 PPTSGTAIIngsdirtnieGARMSLGICPQHNVLFD-EMSVSNHIRffsrmkGLRGKAVEQEVAKYLKMIeL--EDKANV 642
Cdd:COG0488 366 EPDSGTVKL----------GETVKIGYFDQHQEELDpDKTVLDELR------DGAPGGTEQEVRGYLGRF-LfsGDDAFK 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 643 ASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKvGrTLLLTTH---FMDEadvLGDRIAIMC 719
Cdd:COG0488 429 PVGVLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEALDDFP-G-TVLLVSHdryFLDR---VATRILEFE 503
|
....*
gi 442617143 720 DGELK 724
Cdd:COG0488 504 DGGVR 508
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
516-708 |
1.72e-19 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 90.14 E-value: 1.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSdirtNIEGARMSLGICPQ 595
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK----PVEGPGAERGVVFQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLrGKAVEQEVA-KYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGV-EKMQRLEIAhQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156
|
170 180 190
....*....|....*....|....*....|....*.
gi 442617143 675 SGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEA 708
Cdd:PRK11248 157 GALDAFTREQMQTLLLKlwQETGKQVLLITHDIEEA 192
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
516-723 |
2.82e-19 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 93.55 E-value: 2.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRtnIEGAR--MSLGI- 592
Cdd:COG3845 6 LELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGKPVR--IRSPRdaIALGIg 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 -CPQHNVLFDEMSVSNHI--------RFFSRMKGLRgKAVEQEVAKY-LKmIELEDKAnvasSKLSGGMKRKLSVCCALC 662
Cdd:COG3845 84 mVHQHFMLVPNLTVAENIvlgleptkGGRLDRKAAR-ARIRELSERYgLD-VDPDAKV----EDLSVGEQQRVEILKALY 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 663 GDTKVVLCDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:COG3845 158 RGARILILDEPTAVLTPQEADELFEILRRLAAeGKSIIFITHKLREVMAIADRVTVLRRGKV 219
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
526-723 |
3.44e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 89.89 E-value: 3.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGL---SMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-----NIEGARMSLGICPQ-- 595
Cdd:PRK13641 15 GTPMEKKGLdniSFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPetgnkNLKKLRKKVSLVFQfp 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEmSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIEL-EDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:PRK13641 95 EAQLFEN-TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLsEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 675 SGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK13641 174 AGLDPEGRKEMMQLFKDyQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
518-743 |
3.88e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 90.53 E-value: 3.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 518 MRHL-KKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING-------SDIRTNIeGARMs 589
Cdd:COG4586 24 LKGLfRREYREVEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGILVPTSGEVRVLGyvpfkrrKEFARRI-GVVF- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 590 lGicpQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVL 669
Cdd:COG4586 102 -G---QRSQLWWDLPAIDSFRLLKAIYRIPDAEYKKRLDELVELLDLGELLDTPVRQLSLGQRMRCELAAALLHRPKILF 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 670 CDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSgYRLI 743
Cdd:COG4586 178 LDEPTIGLDVVSKEAIREFLKEynRERGTTILLTSHDMDDIEALCDRVIVIDHGRIIYDGSLEELKERFGP-YKTI 252
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
498-728 |
4.40e-19 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 93.28 E-value: 4.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 498 EQRDPKAFETEPEGKHIGLQMRHLKKRF-GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING 576
Cdd:COG4988 319 EPAAPAGTAPLPAAGPPSIELEDVSFSYpGGRPALDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLPPYSGSILING 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 577 SDIRT-NIEGARMSLGICPQHNVLFdEMSVSNHIRFFsrmkglRGKAVEQEVAKYLKmieledKANVAS----------- 644
Cdd:COG4988 399 VDLSDlDPASWRRQIAWVPQNPYLF-AGTIRENLRLG------RPDASDEELEAALE------AAGLDEfvaalpdgldt 465
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 645 ------SKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHfmDEADV-LGDRIAI 717
Cdd:COG4988 466 plgeggRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGRTVILITH--RLALLaQADRILV 543
|
250
....*....|.
gi 442617143 718 MCDGELKCQGT 728
Cdd:COG4988 544 LDDGRIVEQGT 554
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
1376-1553 |
4.58e-19 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 87.74 E-value: 4.58e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1376 GLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIY-----KMIGYCPQFDALLDDLTGREvlRIFCMLRGVQ 1450
Cdd:cd03297 27 GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINlppqqRKIGLVFQQYALFPHLNVRE--NLAFGLKRKR 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1451 ESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDS-GKS 1529
Cdd:cd03297 105 NREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNlNIP 184
|
170 180
....*....|....*....|....
gi 442617143 1530 IVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:cd03297 185 VIFVTHDLSEAEYLADRIVVMEDG 208
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1347-1568 |
1.02e-18 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 89.77 E-value: 1.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGlsleSNMNSI--YK-MIGY 1423
Cdd:COG3842 6 LELENVSKRYGDVTALDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFETPDSGRILLDG----RDVTGLppEKrNVGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1424 CPQFDALLDDLTGRE-V---LRIfcmlRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNK-RklsTAIA---VIgS 1495
Cdd:COG3842 82 VFQDYALFPHLTVAEnVafgLRM----RGVPKAEIRARVAELLELVGLEGLADRYPHQLSGGQQqR---VALAralAP-E 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 1496 PSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL----KNKF 1568
Cdd:COG3842 154 PRVLLLDEPLSALDAKLREEMREELRRLqRELGITFIYVTHDQEEALALADRIAVMNDGRIEQVGTPEEIyerpATRF 231
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
526-703 |
1.23e-18 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 85.68 E-value: 1.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTG--MFPPTSGTAIINGSDIRtnIEGARMSLGICPQHNVLFDEM 603
Cdd:cd03213 20 SGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGrrTGLGVSGEVLINGRPLD--KRSFRKIIGYVPQDDILHPTL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 604 SVSNHIRFFSRMKGlrgkaveqevakylkmieledkanvasskLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARR 683
Cdd:cd03213 98 TVRETLMFAAKLRG-----------------------------LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSAL 148
|
170 180
....*....|....*....|.
gi 442617143 684 QLWDLLQQE-KVGRTLLLTTH 703
Cdd:cd03213 149 QVMSLLRRLaDTGRTIICSIH 169
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
516-721 |
1.54e-18 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 86.69 E-value: 1.54e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR---TNIEGARMSLGI 592
Cdd:PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNdpkVDERLIRQEAGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSNHIRFFS-RMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:PRK09493 82 VFQQFYLFPHLTALENVMFGPlRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 442617143 672 EPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDG 721
Cdd:PRK09493 162 EPTSALDPELRHEVLKVMQDlAEEGMTMVIVTHEIGFAEKVASRLIFIDKG 212
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
516-723 |
1.66e-18 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 86.89 E-value: 1.66e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMF-----PPTSGTAIINGSDI-RTNIEGARMS 589
Cdd:PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIelypeARVSGEVYLDGQDIfKMDVIELRRR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 590 LGIC-----PQHNV-LFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCG 663
Cdd:PRK14247 84 VQMVfqipnPIPNLsIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 664 DTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK14247 164 QPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
530-743 |
1.84e-18 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 86.44 E-value: 1.84e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 530 VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDeMSVSNH 608
Cdd:cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDlNLRWLRSQIGLVSQEPVLFD-GTIAEN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 609 IRFfsrmkGlRGKAVEQEVAKYLKM-------IELEDKANV----ASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGM 677
Cdd:cd03249 97 IRY-----G-KPDATDEEVEEAAKKanihdfiMSLPDGYDTlvgeRGSQLSGGQKQRIAIARALLRNPKILLLDEATSAL 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 678 DPSARRQLWDLLQQEKVGRTLLLTTHFMdeADVLG-DRIAIMCDGELKCQGTSFFLKKQYGSGYRLI 743
Cdd:cd03249 171 DAESEKLVQEALDRAMKGRTTIVIAHRL--STIRNaDLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
1347-1568 |
2.64e-18 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 85.85 E-value: 2.64e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNqVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNSIYKMIGYCPQ 1426
Cdd:cd03299 1 LKVENLSKDWKEFKLKN-VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI-TNLPPEKRDISYVPQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALLDDLTGRE----VLRIFCMLRGVQESRIRQLSEDLaksfgfmkHIDKQTHAY----SGGNKRKLSTAIAVIGSPSV 1498
Cdd:cd03299 79 NYALFPHMTVYKniayGLKKRKVDKKEIERKVLEIAEML--------GIDHLLNRKpetlSGGEQQRVAIARALVVNPKI 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1499 IYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVL-TSHSMEECEALCTRLAIMVNGEFKCIGSTQ----HLKNKF 1568
Cdd:cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLhVTHDFEEAWALADKVAIMLNGKLIQVGKPEevfkKPKNEF 225
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
546-736 |
3.35e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 86.76 E-value: 3.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 546 LLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTN-----IEGARMSLGICPQ--HNVLFdEMSVSNHIRFFSRMKGL 618
Cdd:PRK13646 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKtkdkyIRPVRKRIGMVFQfpESQLF-EDTVEREIIFGPKNFKM 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 619 RGKAVEQEVAKYLkmIELEDKANVASS---KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEK 693
Cdd:PRK13646 117 NLDEVKNYAHRLL--MDLGFSRDVMSQspfQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKslQTD 194
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 442617143 694 VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT--SFFLKKQY 736
Cdd:PRK13646 195 ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSpkELFKDKKK 239
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
1377-1535 |
4.76e-18 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 83.83 E-value: 4.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1377 LLGVNGAGKTTTFKMMTGDERIS--SGAAYVQGLSLESNMNsiyKMIGYCPQFDALLDDLTGREVLRIFCMLRGVqesri 1454
Cdd:cd03232 38 LMGESGAGKTTLLDVLAGRKTAGviTGEILINGRPLDKNFQ---RSTGYVEQQDVHSPNLTVREALRFSALLRGL----- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1455 rqlsedlaksfgfmkhidkqthaySGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARrqlWNMVCRIR---DSGKSIV 1531
Cdd:cd03232 110 ------------------------SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAA---YNIVRFLKklaDSGQAIL 162
|
....
gi 442617143 1532 LTSH 1535
Cdd:cd03232 163 CTIH 166
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
526-703 |
5.52e-18 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 84.16 E-value: 5.52e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMS-LGicpQHNVLFDEMS 604
Cdd:PRK13539 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHyLG---HRNAMKPALT 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 605 VSNHIRFFSRMKGLRgkavEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQ 684
Cdd:PRK13539 90 VAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVAL 165
|
170 180
....*....|....*....|
gi 442617143 685 LWDLLQQE-KVGRTLLLTTH 703
Cdd:PRK13539 166 FAELIRAHlAQGGIVIAATH 185
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
516-727 |
5.98e-18 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 85.41 E-value: 5.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR--------------T 581
Cdd:PRK10619 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINlvrdkdgqlkvadkN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 582 NIEGARMSLGICPQHNVLFDEMSV-SNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVA-SSKLSGGMKRKLSVCC 659
Cdd:PRK10619 86 QLRLLRTRLTMVFQHFNLWSHMTVlENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKyPVHLSGGQQQRVSIAR 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 660 ALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK10619 166 ALAMEPEVLLFDEPTSALDPELVGEVLRIMQQlAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
534-728 |
1.00e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 85.19 E-value: 1.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 534 LSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQH--------NVLFD-EM 603
Cdd:PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDdNFEKLRKHIGIVFQNpdnqfvgsIVKYDvAF 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 604 SVSNHIRFFSRMKglrgkaveQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARR 683
Cdd:PRK13648 108 GLENHAVPYDEMH--------RRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 442617143 684 QLWDLLQQEKVGR--TLLLTTHFMDEAdVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13648 180 NLLDLVRKVKSEHniTIISITHDLSEA-MEADHVIVMNKGTVYKEGT 225
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
516-728 |
1.08e-17 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 84.82 E-value: 1.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR--TNIEGARMsLGIC 593
Cdd:PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAdwSPAELARR-RAVL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVL-FD-------EMSVSNHirffsrmkGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALC--- 662
Cdd:PRK13548 82 PQHSSLsFPftveevvAMGRAPH--------GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAqlw 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 663 ---GDTKVVLCDEPSSGMdpsarrqlwDLLQQEKVGRT------------------LLLTTHFmdeadvlGDRIAIMCDG 721
Cdd:PRK13548 154 epdGPPRWLLLDEPTSAL---------DLAHQHHVLRLarqlaherglavivvlhdLNLAARY-------ADRIVLLHQG 217
|
....*..
gi 442617143 722 ELKCQGT 728
Cdd:PRK13548 218 RLVADGT 224
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1361-1554 |
1.28e-17 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 88.15 E-value: 1.28e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG--LSLESNMNSIYKMIGYCP---QFDALLDDLT 1435
Cdd:COG1129 267 VVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADPADSGEIRLDGkpVRIRSPRDAIRAGIAYVPedrKGEGLVLDLS 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1436 GRE-----VLRIFCMLRGVQESRIRQLSEDLAKSFGF-MKHIDKQTHAYSGGNKRKlstaiAVIG-----SPSVIYLDEP 1504
Cdd:COG1129 347 IREnitlaSLDRLSRGGLLDRRRERALAEEYIKRLRIkTPSPEQPVGNLSGGNQQK-----VVLAkwlatDPKVLILDEP 421
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 1505 TTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:COG1129 422 TRGIDVGAKAEIYRLIRELAAEGKAVIVISSELPELLGLSDRILVMREGR 471
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
524-728 |
1.78e-17 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 83.43 E-value: 1.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 524 RFG---NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVL 599
Cdd:cd03253 7 TFAydpGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREvTLDSLRRAIGVVPQDTVL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 600 FDEmSVSNHIRFfsrmkGlRGKAVEQEVAKYLKMIELEDKANVASS-----------KLSGGMKRKLSVCCALCGDTKVV 668
Cdd:cd03253 87 FND-TIGYNIRY-----G-RPDATDEEVIEAAKAAQIHDKIMRFPDgydtivgerglKLSGGEKQRVAIARAILKNPPIL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 669 LCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEAdVLGDRIAIMCDGELKCQGT 728
Cdd:cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTI-VNADKIIVLKDGRIVERGT 218
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
516-760 |
1.79e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 84.78 E-value: 1.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFG---NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGARMSLG 591
Cdd:PRK13650 5 IEVKNLTFKYKedqEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLtEENVWDIRHKIG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQH-NVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:PRK13650 85 MVFQNpDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIIL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 671 DEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEAdVLGDRIAIMCDGELKCQGTSfflKKQYGSGYRLICVKRD 748
Cdd:PRK13650 165 DEATSMLDPEGRLELIKTIKgiRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTP---RELFSRGNDLLQLGLD 240
|
250
....*....|..
gi 442617143 749 DCETNEVTALLN 760
Cdd:PRK13650 241 IPFTTSLVQSLR 252
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
1360-1555 |
2.41e-17 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 81.71 E-value: 2.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1360 MAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG--LSLESNMNSIYKMIGYCP---QFDALLDDL 1434
Cdd:cd03215 14 GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGkpVTRRSPRDAIRAGIAYVPedrKREGLVLDL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1435 TGREVLRIFCMLrgvqesrirqlsedlaksfgfmkhidkqthaySGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARR 1514
Cdd:cd03215 94 SVAENIALSSLL--------------------------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKA 141
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 442617143 1515 QLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:cd03215 142 EIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
501-723 |
2.60e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 87.17 E-value: 2.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 501 DPKAFETEPEGKHIgLQMRHLKKRF-----GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAI-- 573
Cdd:TIGR03269 266 EVEKECEVEVGEPI-IKVRNVSKRYisvdrGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNvr 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 574 -----INGSDIRTNIEG-ARMSLGICPQ------HNVLFDEMSVSNHIRF---FSRMKG---LRGKAVEQEVAKylkmiE 635
Cdd:TIGR03269 345 vgdewVDMTKPGPDGRGrAKRYIGILHQeydlypHRTVLDNLTEAIGLELpdeLARMKAvitLKMVGFDEEKAE-----E 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 636 LEDKanvASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWD--LLQQEKVGRTLLLTTHFMDEADVLGD 713
Cdd:TIGR03269 420 ILDK---YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHsiLKAREEMEQTFIIVSHDMDFVLDVCD 496
|
250
....*....|
gi 442617143 714 RIAIMCDGEL 723
Cdd:TIGR03269 497 RAALMRDGKI 506
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
516-727 |
2.69e-17 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 81.21 E-value: 2.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFG--NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIC 593
Cdd:cd03247 1 LSINNVSFSYPeqEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEmSVSNHIrffsrmkGLRgkaveqevakylkmieledkanvasskLSGGMKRKLSVCCALCGDTKVVLCDEP 673
Cdd:cd03247 81 NQRPYLFDT-TLRNNL-------GRR---------------------------FSGGERQRLALARILLQDAPIVLLDEP 125
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 674 SSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLgDRIAIMCDGELKCQG 727
Cdd:cd03247 126 TVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
1361-1560 |
2.75e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 83.98 E-value: 2.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGL--SLESNMNSIYK---MIGYCP--QFDALL-- 1431
Cdd:PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLdtSDEENLWDIRNkagMVFQNPdnQIVATIve 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 -DDLTGREVLrifcmlrGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDP 1510
Cdd:PRK13633 105 eDVAFGPENL-------GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 442617143 1511 AARRQLWNMVCRI-RDSGKSIVLTSHSMEECeALCTRLAIMVNGEFKCIGS 1560
Cdd:PRK13633 178 SGRREVVNTIKELnKKYGITIILITHYMEEA-VEADRIIVMDSGKVVMEGT 227
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
516-723 |
2.79e-17 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 83.00 E-value: 2.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARM---SLGI 592
Cdd:PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDI-TDWQTAKImreAVAI 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSNHIR---FFSRMkglrgKAVEQEVAKYLKMI-ELEDKANVASSKLSGGMKRKLSVCCALCGDTKVV 668
Cdd:PRK11614 85 VPEGRRVFSRMTVEENLAmggFFAER-----DQFQERIKWVYELFpRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 669 LCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQlREQGMTIFLVEQNANQALKLADRGYVLENGHV 215
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
535-730 |
2.80e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 84.29 E-value: 2.80e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 535 SMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGA------RMSLGIC---PQHNvLFDEmSV 605
Cdd:PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIkevkrlRKEIGLVfqfPEYQ-LFQE-TI 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 606 SNHIRFFSRMKGLRGKAVEQEVAKYLKMIEL-EDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQ 684
Cdd:PRK13645 109 EKDIAFGPVNLGENKQEAYKKVPELLKLVQLpEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 442617143 685 LWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSF 730
Cdd:PRK13645 189 FINLFERlnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
516-740 |
2.89e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 81.80 E-value: 2.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGmFP---PTSGTAIINGSDIrTNI---EGARMS 589
Cdd:cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPkyeVTEGEILFKGEDI-TDLppeERARLG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 590 LGICPQHNVLFDEMSVSNHIRFFsrmkglrgkaveqevakylkmieledkaNVassKLSGGMKRKLSVCCALCGDTKVVL 669
Cdd:cd03217 79 IFLAFQYPPEIPGVKNADFLRYV----------------------------NE---GFSGGEKKRNEILQLLLLEPDLAI 127
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 670 CDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEAD-VLGDRIAIMCDGELKCQGTSFFLKKQYGSGY 740
Cdd:cd03217 128 LDEPDSGLDIDALRLVAEVINKlREEGKSVLIITHYQRLLDyIKPDRVHVLYDGRIVKSGDKELALEIEKKGY 200
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
509-703 |
5.06e-17 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 86.57 E-value: 5.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 509 PEGKHIGLQMRHLKKRFGNKM-VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGA 586
Cdd:TIGR02857 315 TAAPASSLEFSGVSVAYPGRRpALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADaDADSW 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 587 RMSLGICPQHNVLFdEMSVSNHIRFFsrmkglRGKAVEQEVAKYLKMIELEDKANVA-----------SSKLSGGMKRKL 655
Cdd:TIGR02857 395 RDQIAWVPQHPFLF-AGTIAENIRLA------RPDASDAEIREALERAGLDEFVAALpqgldtpigegGAGLSGGQAQRL 467
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 442617143 656 SVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTH 703
Cdd:TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTH 515
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
1349-1564 |
6.92e-17 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 81.46 E-value: 6.92e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG-----DERISSGAAYVQG---LSLESNMNSIYKM 1420
Cdd:cd03260 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRlndliPGAPDEGEVLLDGkdiYDLDVDVLELRRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 IGYCPQFDALLDdLTGREVLRIFCMLRGVQESR-IRQLSEDLAKSFGFMKHIDKQTHAY--SGGNKRKLSTAIAVIGSPS 1497
Cdd:cd03260 83 VGMVFQKPNPFP-GSIYDNVAYGLRLHGIKLKEeLDERVEEALRKAALWDEVKDRLHALglSGGQQQRLCLARALANEPE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRIRDSgKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:cd03260 162 VLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
506-737 |
1.01e-16 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 83.63 E-value: 1.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 506 ETEPEGKHIGLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTiSMLTGMFPPTSGTAIINGSDIRTNIEG 585
Cdd:NF000106 4 KTISNGARNAVEVRGLVKHFGEVKAVDGVDLDVREGTVLGVLGP*GAA**RG-ALPAHV*GPDAGRRPWRF*TWCANRRA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 586 ARMSLGIC-PQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGD 664
Cdd:NF000106 83 LRRTIG*HrPVR*GRRESFSGRENLYMIGR*LDLSRKDARARADELLERFSLTEAAGRAAAKYSGGMRRRLDLAASMIGR 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 665 TKVVLCDEPSSGMDPSARRQLWDLLQQE-KVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSFFLKKQYG 737
Cdd:NF000106 163 PAVLYLDEPTTGLDPRTRNEVWDEVRSMvRDGATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELKTKVG 236
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
526-728 |
1.02e-16 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 81.12 E-value: 1.02e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFdEMS 604
Cdd:cd03254 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVLQDTFLF-SGT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 605 VSNHIRFFsrmkglRGKAVEQEVAKYLKMIELED-----------KANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEP 673
Cdd:cd03254 93 IMENIRLG------RPNATDEEVIEAAKEAGAHDfimklpngydtVLGENGGNLSQGERQLLAIARAMLRDPKILILDEA 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 674 SSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMD---EAdvlgDRIAIMCDGELKCQGT 728
Cdd:cd03254 167 TSNIDTETEKLIQEALEKLMKGRTSIIIAHRLStikNA----DKILVLDDGKIIEEGT 220
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
1362-1554 |
1.03e-16 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 81.16 E-value: 1.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGdeRISSGAAYVQGLSLESNMNSIYKM---IGYCPQFDALLDDLTGRE 1438
Cdd:cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISG--RVEGGGTTSGQILFNGQPRKPDQFqkcVAYVRQDDILLPGLTVRE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1439 VLRIFCMLRGVQESRIRQLSEdLAKSFGfMKHI-DKQT-HAY----SGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAA 1512
Cdd:cd03234 101 TLTYTAILRLPRKSSDAIRKK-RVEDVL-LRDLaLTRIgGNLvkgiSGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 442617143 1513 RRQLWNMVCRIRDSGKSIVLTSHS-MEECEALCTRLAIMVNGE 1554
Cdd:cd03234 179 ALNLVSTLSQLARRNRIVILTIHQpRSDLFRLFDRILLLSSGE 221
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1347-1553 |
1.42e-16 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 81.08 E-value: 1.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNS--IYKMIGYC 1424
Cdd:PRK11614 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAkiMREAVAIV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQFDALLDDLTGREVLRI--FCMLRGVQESRIR-------QLSEDLAKSFGFMkhidkqthaySGGNKRKLSTAIAVIGS 1495
Cdd:PRK11614 86 PEGRRVFSRMTVEENLAMggFFAERDQFQERIKwvyelfpRLHERRIQRAGTM----------SGGEQQMLAIGRALMSQ 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 1496 PSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENG 213
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
526-728 |
1.82e-16 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 84.83 E-value: 1.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDeMS 604
Cdd:COG1132 351 GDRPVLKDISLTIPPGETVALVGPSGSGKSTLVNLLLRFYDPTSGRILIDGVDIRDlTLESLRRQIGVVPQDTFLFS-GT 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 605 VSNHIRFFsrmkglRGKAVEQEVAKYLKMIELEDkaNVAS-------------SKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:COG1132 430 IRENIRYG------RPDATDEEVEEAAKAAQAHE--FIEAlpdgydtvvgergVNLSGGQRQRIAIARALLKDPPILILD 501
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 672 EPSSGMDPSARRQLWDLLQQEKVGRTLLLTTH------FMdeadvlgDRIAIMCDGELKCQGT 728
Cdd:COG1132 502 EATSALDTETEALIQEALERLMKGRTTIVIAHrlstirNA-------DRILVLDDGRIVEQGT 557
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1336-1593 |
2.09e-16 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 83.35 E-value: 2.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1336 QMSSNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMN 1415
Cdd:PRK11607 9 QAKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL-SHVP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1416 SIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGS 1495
Cdd:PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1496 PSVIYLDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGST----QHLKNKFSK 1570
Cdd:PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERvGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPeeiyEHPTTRYSA 247
|
250 260
....*....|....*....|...
gi 442617143 1571 GLILKIKVrrnLEALRQARLSGG 1593
Cdd:PRK11607 248 EFIGSVNV---FEGVLKERQEDG 267
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
515-729 |
2.34e-16 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 80.44 E-value: 2.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGS--DIRTNIEGARMSL-- 590
Cdd:COG4161 2 SIQLKNINCFYGSHQALFDINLECPSGETLVLLGPSGAGKSSLLRVLNLLETPDSGQLNIAGHqfDFSQKPSEKAIRLlr 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 ---GICPQHNVLFDEMSV-SNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTK 666
Cdd:COG4161 82 qkvGMVFQQYNLWPHLTVmENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKADRFPLHLSGGQQQRVAIARALMMEPQ 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 667 VVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:COG4161 162 VLLFDEPTAALDPEITAQVVEIIRElSQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGDA 225
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
516-728 |
2.57e-16 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 81.21 E-value: 2.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGN--KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGS--------DIRTNIeg 585
Cdd:PRK13635 6 IRVEHISFRYPDaaTYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMvlseetvwDVRRQV-- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 586 armslGICPQH-NVLFDEMSVSNHIRFfsrmkGLRGKAVEQE-----VAKYLKMIELEDKANVASSKLSGGMKRKLSVCC 659
Cdd:PRK13635 84 -----GMVFQNpDNQFVGATVQDDVAF-----GLENIGVPREemverVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAG 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 660 ALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEAdVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQlkEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGT 223
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
513-728 |
2.74e-16 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 79.86 E-value: 2.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 513 HIGLQMRHLKKRF--GNKM--VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARM 588
Cdd:PRK11629 3 KILLQCDNLCKRYqeGSVQtdVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 589 S-----LGICPQ-HNVLFDEMSVSNhirffSRMKGLRGKAVEQEVAK----YLKMIELEDKANVASSKLSGGMKRKLSVC 658
Cdd:PRK11629 83 ElrnqkLGFIYQfHHLLPDFTALEN-----VAMPLLIGKKKPAEINSraleMLAAVGLEHRANHRPSELSGGERQRVAIA 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 659 CALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKV--GRTLLLTTHFMDEADVLgDRIAIMCDGELKCQGT 728
Cdd:PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRlqGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELS 228
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1342-1562 |
3.30e-16 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 80.70 E-value: 3.30e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1342 LATKNLVLDRVT-KYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSiyKM 1420
Cdd:PRK15056 2 MQQAGIVVNDVTvTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQK--NL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 IGYCPQ-------FDALLDDLTGREVLRIFCMLRgVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVI 1493
Cdd:PRK15056 80 VAYVPQseevdwsFPVLVEDVVMMGRYGHMGWLR-RAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1494 GSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTrLAIMVNGEFKCIGSTQ 1562
Cdd:PRK15056 159 QQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD-YTVMVKGTVLASGPTE 226
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
1357-1564 |
3.55e-16 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 80.38 E-value: 3.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1357 GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNSI------YKMIGYCPQFDAL 1430
Cdd:cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDI-AAMSRKelrelrRKKISMVFQSFAL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1431 LDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDP 1510
Cdd:cd03294 114 LPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDP 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1511 AARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:cd03294 194 LIRREMQDELLRLqAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
524-727 |
3.90e-16 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 80.44 E-value: 3.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 524 RFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEG---ARMSLGIC---PQHN 597
Cdd:PRK13638 10 RYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGllaLRQQVATVfqdPEQQ 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 598 VLFDEmsVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGM 677
Cdd:PRK13638 90 IFYTD--IDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGL 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 442617143 678 DPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK13638 168 DPAGRTQMIAIIRRiVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
1346-1553 |
4.05e-16 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 79.17 E-value: 4.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1346 NLVLDRVTKYY--GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIG 1422
Cdd:cd03245 2 RIEFRNVSFSYpnQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIrQLDPADLRRNIG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQfDALLDDLTGREVLRIFC-------MLRGVQESRIRQLSEDLAKSFGFMkhIDKQTHAYSGGNKRKLSTAIAVIGS 1495
Cdd:cd03245 82 YVPQ-DVTLFYGTLRDNITLGApladderILRAAELAGVTDFVNKHPNGLDLQ--IGERGRGLSGGQRQAVALARALLND 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1496 PSVIYLDEPTTGMDPAARRQLwnmVCRIRD--SGKSIVLTSH--SMEEceaLCTRLAIMVNG 1553
Cdd:cd03245 159 PPILLLDEPTSAMDMNSEERL---KERLRQllGDKTLIIITHrpSLLD---LVDRIIVMDSG 214
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
508-723 |
5.18e-16 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 79.11 E-value: 5.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 508 EPEGKHIGLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSdIRTNIEgar 587
Cdd:cd03220 15 GGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR-VSSLLG--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 588 MSLGICPqhnvlfdEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKV 667
Cdd:cd03220 91 LGGGFNP-------ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 668 VLCDEPSSGMDPSARRQLWDLLQQE-KVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:cd03220 164 LLIDEVLAVGDAAFQEKCQRRLRELlKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
528-728 |
5.62e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 80.23 E-value: 5.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 528 KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGT-AIINGSDIRTNIEGA---RMSLGICPQH-NVLFDE 602
Cdd:PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPnSKITVDGITLTAKTVwdiREKVGIVFQNpDNQFVG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 603 MSVSNHIRFfsrmkGLRGKAVEQE-----VAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGM 677
Cdd:PRK13640 100 ATVGDDVAF-----GLENRAVPRPemikiVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 678 DPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEAdVLGDRIAIMCDGELKCQGT 728
Cdd:PRK13640 175 DPAGKEQILKLIRklKKKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGS 226
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
531-723 |
6.14e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 80.14 E-value: 6.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 531 VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQH-NVLFDEMSVSNH 608
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAeNVWNLRRKIGMVFQNpDNQFVGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 609 IRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDL 688
Cdd:PRK13642 103 VAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRV 182
|
170 180 190
....*....|....*....|....*....|....*..
gi 442617143 689 LQQ--EKVGRTLLLTTHFMDEAdVLGDRIAIMCDGEL 723
Cdd:PRK13642 183 IHEikEKYQLTVLSITHDLDEA-ASSDRILVMKAGEI 218
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
522-723 |
1.14e-15 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 77.99 E-value: 1.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 522 KKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI----RTNIEGARMSLGICPQ-H 596
Cdd:PRK10908 9 KAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDItrlkNREVPFLRRQIGMIFQdH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 597 NVLFDEmSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSG 676
Cdd:PRK10908 89 HLLMDR-TVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGN 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 442617143 677 MDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK10908 168 LDDALSEGILRLFEEfNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
515-722 |
1.26e-15 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 78.93 E-value: 1.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTS-----GTAIINGSDI---RTNIEGA 586
Cdd:PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESevrveGRVEFFNQNIyerRVNLNRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 587 RMSLGIC-PQHNVLfdEMSVSNHIRFFSRMKGLRGKA-VEQEVAKYLKMIELED----KANVASSKLSGGMKRKLSVCCA 660
Cdd:PRK14258 87 RRQVSMVhPKPNLF--PMSVYDNVAYGVKIVGWRPKLeIDDIVESALKDADLWDeikhKIHKSALDLSGGQQQRLCIARA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 661 LCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGR--TLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSelTMVIVSHNLHQVSRLSDFTAFFKGNE 228
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
1358-1570 |
1.29e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 79.44 E-value: 1.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1358 QFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESN-----MNSIYKMIGYCPQF--DAL 1430
Cdd:PRK13646 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKtkdkyIRPVRKRIGMVFQFpeSQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1431 LDDLTGREVL---RIFCM-LRGVQESRIRQLSEdlaksFGFMKHIDKQT-HAYSGGNKRKLSTAIAVIGSPSVIYLDEPT 1505
Cdd:PRK13646 99 FEDTVEREIIfgpKNFKMnLDEVKNYAHRLLMD-----LGFSRDVMSQSpFQMSGGQMRKIAIVSILAMNPDIIVLDEPT 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1506 TGMDPAARRQLWNMVCRIR-DSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSK 1570
Cdd:PRK13646 174 AGLDPQSKRQVMRLLKSLQtDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKK 239
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1361-1560 |
1.41e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 79.32 E-value: 1.41e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES---NMNSIYKMIGYCPQF-------DAL 1430
Cdd:PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDkkvKLSDIRKKVGLVFQYpeyqlfeETI 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1431 LDD---------LTGREVlrifcmlrgvqESRIRQLSEDLAKSFGFMKhiDKQTHAYSGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:PRK13637 102 EKDiafgpinlgLSEEEI-----------ENRVKRAMNIVGLDYEDYK--DKSPFELSGGQKRRVAIAGVVAMEPKILIL 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1502 DEPTTGMDPAARRQLWNMVCRIRDSGK-SIVLTSHSMEECEALCTRLAIMVNGEFKCIGS 1560
Cdd:PRK13637 169 DEPTAGLDPKGRDEILNKIKELHKEYNmTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
542-742 |
1.63e-15 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 77.66 E-value: 1.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDEmSVSNHIRFfsrmkGLRG 620
Cdd:cd03251 29 ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDyTLASLRRQIGLVSQDVFLFND-TVAENIAY-----GRPG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 621 kAVEQEVAKYLKM-------IELED--KANVAS--SKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLL 689
Cdd:cd03251 103 -ATREEVEEAARAanahefiMELPEgyDTVIGErgVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 690 QQEKVGRTLLLTTH----FMDeadvlGDRIAIMCDGELKCQGTSFFLKKQYGSGYRL 742
Cdd:cd03251 182 ERLMKNRTTFVIAHrlstIEN-----ADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
516-703 |
1.79e-15 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 76.63 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 595
Cdd:TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENILYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKylkmIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAA----VGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWILDEPTT 156
|
170 180
....*....|....*....|....*....
gi 442617143 676 GMDPSARRQLWDLLQQE-KVGRTLLLTTH 703
Cdd:TIGR01189 157 ALDKAGVALLAGLLRAHlARGGIVLLTTH 185
|
|
| ABC2_membrane_3 |
pfam12698 |
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ... |
247-453 |
1.96e-15 |
|
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.
Pssm-ID: 463674 [Multi-domain] Cd Length: 345 Bit Score: 79.74 E-value: 1.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 247 SSIMSLIILLSFIYPCTYITKYITAEKEKQLKEVMKIMGLSNWLHWTAWFVKSF-IMLTISAILIAILVKINwsedvavL 325
Cdd:pfam12698 161 YYLVGLILMIIILIGAAIIAVSIVEEKESRIKERLLVSGVSPLQYWLGKILGDFlVGLLQLLIILLLLFGIG-------I 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 326 THANFTALVFFLIIYIVSSICFCFMMATFFSRASTAAAVTGLIWFIAYIPYSFTINSYDdlsLSSKLGW--SLISNTAMG 403
Cdd:pfam12698 234 PFGNLGLLLLLFLLYGLAYIALGYLLGSLFKNSEDAQSIIGIVILLLSGFFGGLFPLED---PPSFLQWifSIIPFFSPI 310
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 404 FGIKLILgfegtgeglqwsnfftpvSVDDTLTLGAVMIMMLVSCVIYMII 453
Cdd:pfam12698 311 DGLLRLI------------------YGDSLWEIAPSLIILLLFAVVLLLL 342
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
516-729 |
2.07e-15 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 78.27 E-value: 2.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI----RTNIEGARMSLG 591
Cdd:PRK11831 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIpamsRSRLYTVRKRMS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHIRF-FSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:PRK11831 88 MLFQSGALFTDMNVFDNVAYpLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 671 DEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:PRK11831 168 DEPFVGQDPITMGVLVKLISElnSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSA 228
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
519-727 |
2.16e-15 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 77.31 E-value: 2.16e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 519 RHLKKRFgnkmvvkglSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDiRTNIEGARMSLGICPQHNV 598
Cdd:PRK10771 12 HHLPMRF---------DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD-HTTTPPSRRPVSMLFQENN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 599 LFDEMSVSNHIRfFSRMKGLRGKAVEQE-VAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGM 677
Cdd:PRK10771 82 LFSHLTVAQNIG-LGLNPGLKLNAAQREkLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 678 DPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK10771 161 DPALRQEMLTLVSQvcQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDG 212
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1347-1554 |
2.40e-15 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 80.84 E-value: 2.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG--LSLESNMNSIYKMIGYC 1424
Cdd:COG3845 6 LELRGITKRFGGVVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGLYQPDSGEILIDGkpVRIRSPRDAIALGIGMV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQ-FdALLDDLT-------GREVLRIFCMLRGVQESRIRQLSEDlaksFGFmkHIDKQTHAYSggnkrkLSTAI------ 1490
Cdd:COG3845 86 HQhF-MLVPNLTvaenivlGLEPTKGGRLDRKAARARIRELSER----YGL--DVDPDAKVED------LSVGEqqrvei 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1491 --AVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:COG3845 153 lkALYRGARILILDEPTAVLTPQEADELFEILRRLAAEGKSIIFITHKLREVMAIADRVTVLRRGK 218
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
1354-1578 |
2.44e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 78.11 E-value: 2.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1354 KYYGQF-MAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGYC---P--Q 1426
Cdd:PRK13632 16 SYPNSEnNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKeNLKEIRKKIGIIfqnPdnQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FDALL--DDLT-GREVlrifcmlRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDE 1503
Cdd:PRK13632 96 FIGATveDDIAfGLEN-------KKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1504 PTTGMDPAARRQLWNMVCRIRDSG-KSIVLTSHSMEECeALCTRLAIMVNGEFKCIGSTQHLKNkfSKGLILKIKV 1578
Cdd:PRK13632 169 STSMLDPKGKREIKKIMVDLRKTRkKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEILN--NKEILEKAKI 241
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
515-711 |
2.49e-15 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 76.75 E-value: 2.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPP---TSGTAIINGSDIRT-NIEGARmsL 590
Cdd:COG4136 1 MLSLENLTITLGGRPLLAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPafsASGEVLLNGRRLTAlPAEQRR--I 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 GICPQHNVLFDEMSVSNHIRFFSRmKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:COG4136 79 GILFQDDLLFPHLSVGENLAFALP-PTIGRAQRRARVEQALEEAGLAGFADRDPATLSGGQRARVALLRALLAEPRALLL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 442617143 671 DEPSSGMDPSARRQL----WDLLQQEKVgrTLLLTTHfmDEADVL 711
Cdd:COG4136 158 DEPFSKLDAALRAQFrefvFEQIRQRGI--PALLVTH--DEEDAP 198
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
1365-1559 |
3.31e-15 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 76.74 E-value: 3.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1365 VSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSiyKMIGYcpQFDALLDDLTGRE--VLRI 1442
Cdd:TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD--RMVVF--QNYSLLPWLTVREniALAV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1443 FCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCR 1522
Cdd:TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159
|
170 180 190
....*....|....*....|....*....|....*...
gi 442617143 1523 I-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIG 1559
Cdd:TIGR01184 160 IwEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
516-727 |
3.32e-15 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 77.10 E-value: 3.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTN---------IEGA 586
Cdd:PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTArslsqqkglIRQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 587 RMSLGICPQHNVLFDEMSV-SNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDT 665
Cdd:PRK11264 84 RQHVGFVFQNFNLFPHRTVlENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRP 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 666 KVVLCDEPSSGMDP-------SARRQlwdlLQQEKvgRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK11264 164 EVILFDEPTSALDPelvgevlNTIRQ----LAQEK--RTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
516-721 |
5.02e-15 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 80.09 E-value: 5.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSdIRTNIEGARM-SLGI-- 592
Cdd:PRK15439 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN-PCARLTPAKAhQLGIyl 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSNHIRFfsrmkGL-RGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:PRK15439 91 VPQEPLLFPNLSVKENILF-----GLpKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 672 EPSSGMDPSARRQLW---DLLQQEKVGrtLLLTTHFMDEADVLGDRIAIMCDG 721
Cdd:PRK15439 166 EPTASLTPAETERLFsriRELLAQGVG--IVFISHKLPEIRQLADRISVMRDG 216
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
1342-1554 |
7.18e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 76.65 E-value: 7.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1342 LATKNLVLdrvtKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKM- 1420
Cdd:PRK13639 2 LETRDLKY----SYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVr 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 --IGYCPQF-DALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPS 1497
Cdd:PRK13639 78 ktVGIVFQNpDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGK 214
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
542-728 |
8.21e-15 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 77.84 E-value: 8.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING-----SDIRTNIEGARMSLGICPQHNVLFDEMSVSNHIRFfsRMK 616
Cdd:TIGR02142 24 GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGrtlfdSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRY--GMK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 617 GLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKV 694
Cdd:TIGR02142 102 RARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERlhAEF 181
|
170 180 190
....*....|....*....|....*....|....
gi 442617143 695 GRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:TIGR02142 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
525-749 |
1.00e-14 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 76.18 E-value: 1.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 525 FGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR--TNIEGARmSLGICPQHNVLFDE 602
Cdd:PRK10253 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQhyASKEVAR-RIGLLAQNATTPGD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 603 MSVSN--------HIRFFSRMKglrgKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:PRK10253 96 ITVQElvargrypHQPLFTRWR----KEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPT 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 675 SGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG------TSFFLKKQYGsgyrLICVK 746
Cdd:PRK10253 172 TWLDISHQIDLLELLSElnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGapkeivTAELIERIYG----LRCMI 247
|
...
gi 442617143 747 RDD 749
Cdd:PRK10253 248 IDD 250
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
516-727 |
1.21e-14 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 75.64 E-value: 1.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSD-----IRTNIEGARMSL 590
Cdd:TIGR02323 4 LQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSgaeleLYQLSEAERRRL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 -----GICPQHNVLFDEMSVSNHIRFFSRMK--GLR--GKaVEQEVAKYLKMIELE-DKANVASSKLSGGMKRKLSVCCA 660
Cdd:TIGR02323 84 mrtewGFVHQNPRDGLRMRVSAGANIGERLMaiGARhyGN-IRATAQDWLEEVEIDpTRIDDLPRAFSGGMQQRLQIARN 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 661 LCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGlvRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
1347-1550 |
1.28e-14 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 77.02 E-value: 1.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYY----GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG---DERISSGAAYVQG---LSL-ESNMN 1415
Cdd:COG0444 2 LEVRNLKVYFptrrGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGllpPPGITSGEILFDGedlLKLsEKELR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1416 SIY-KMIGYCPQ--FDALldD--LT-GR---EVLRIFcmlRGVQESRIRQLSEDLAKSFGF---MKHIDKQTHAYSGGNK 1483
Cdd:COG0444 82 KIRgREIQMIFQdpMTSL--NpvMTvGDqiaEPLRIH---GGLSKAEARERAIELLERVGLpdpERRLDRYPHELSGGMR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 1484 RKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIM 1550
Cdd:COG0444 157 QRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRElGLAILFITHDLGVVAEIADRVAVM 224
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1322-1556 |
1.35e-14 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 78.57 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1322 QLDDDVANERERILQMS---SNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERI 1398
Cdd:COG0488 288 KLEREEPPRRDKTVEIRfppPERLGKKVLELEGLSKSYGDKTLLDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGELEP 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1399 SSGaAYVQGLSLEsnmnsiykmIGYCPQ-FDALLDDLTGREVLRIFcmLRGVQESRIRQlsedLAKSFGFM-KHIDKQTH 1476
Cdd:COG0488 368 DSG-TVKLGETVK---------IGYFDQhQEELDPDKTVLDELRDG--APGGTEQEVRG----YLGRFLFSgDDAFKPVG 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1477 AYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMvcrIRD-SGkSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:COG0488 432 VLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETLEALEEA---LDDfPG-TVLLVSHDRYFLDRVATRILEFEDGGV 507
|
.
gi 442617143 1556 K 1556
Cdd:COG0488 508 R 508
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
509-730 |
1.45e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 76.81 E-value: 1.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 509 PEGKHIGLQMRHLKKRFGNKM-----VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTA----IINGSDI 579
Cdd:PRK13631 15 PLSDDIILRVKNLYCVFDEKQenelvALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIqvgdIYIGDKK 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 580 RT-------------NIEGARMSLGIC---PQHNVLFDemSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIEL-EDKANV 642
Cdd:PRK13631 95 NNhelitnpyskkikNFKELRRRVSMVfqfPEYQLFKD--TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLdDSYLER 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 643 ASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDL-LQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDG 721
Cdd:PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLiLDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252
|
....*....
gi 442617143 722 ELKCQGTSF 730
Cdd:PRK13631 253 KILKTGTPY 261
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
1362-1554 |
1.64e-14 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 73.02 E-value: 1.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGYCPQFDALLDDLTGREVL 1440
Cdd:cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGYLPQDDELFSGSIAENIL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1441 rifcmlrgvqesrirqlsedlaksfgfmkhidkqthaySGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMV 1520
Cdd:cd03246 98 --------------------------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
|
170 180 190
....*....|....*....|....*....|....
gi 442617143 1521 CRIRDSGKSIVLTSHSMEECEAlCTRLAIMVNGE 1554
Cdd:cd03246 140 AALKAAGATRIVIAHRPETLAS-ADRILVLEDGR 172
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1355-1564 |
2.24e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 75.22 E-value: 2.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1355 YYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGYCPQF--DALL 1431
Cdd:PRK13652 13 YSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPItKENIREVRKFVGLVFQNpdDQIF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 DDLTGREVLRIFCMLrGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPA 1511
Cdd:PRK13652 93 SPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1512 ARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK13652 172 GVKELIDFLNDLPETyGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
515-728 |
2.45e-14 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 74.07 E-value: 2.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHlkkRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGIC 593
Cdd:cd03244 7 NVSLRY---RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKiGLHDLRSRISII 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFdemsvSNHIRF----FSR---------MKGLRGKAVEQEVAKYLKMIELEDKANvasskLSGGMKRKLSVCCA 660
Cdd:cd03244 84 PQDPVLF-----SGTIRSnldpFGEysdeelwqaLERVGLKEFVESLPGGLDTVVEEGGEN-----LSVGQRQLLCLARA 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 661 LCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTH----FMDEadvlgDRIAIMCDGELKCQGT 728
Cdd:cd03244 154 LLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHrldtIIDS-----DRILVLDKGRVVEFDS 220
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
1347-1554 |
3.39e-14 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 74.14 E-value: 3.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQ-FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIYKMI 1421
Cdd:cd03256 1 IEVENLSKTYPNgKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDInklkGKALRQLRRQI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GY-------CPQFDALLDDLTGR--EVLRIFCMLRGVQESRIRQLSEDLAKsFGFMKHIDKQTHAYSGGNKRKLSTAIAV 1492
Cdd:cd03256 81 GMifqqfnlIERLSVLENVLSGRlgRRSTWRSLFGLFPKEEKQRALAALER-VGLLDKAYQRADQLSGGQQQRVAIARAL 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1493 IGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRInREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
1347-1564 |
4.38e-14 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 77.11 E-value: 4.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYY--GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGY 1423
Cdd:COG4987 334 LELEDVSFRYpgAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLDPQSGSITLGGVDLRDlDEDDLRRRIAV 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1424 CPQ----FDAllddlTGREVLRIFC----------MLRGVQ-ESRIRQLSEDLaksfgfmkhidkQTH------AYSGGN 1482
Cdd:COG4987 414 VPQrphlFDT-----TLRENLRLARpdatdeelwaALERVGlGDWLAALPDGL------------DTWlgeggrRLSGGE 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1483 KRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDsGKSIVLTSHSMEECEAlCTRLAIMVNGEFKCIGSTQ 1562
Cdd:COG4987 477 RRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALA-GRTVLLITHRLAGLER-MDRILVLEDGRIVEQGTHE 554
|
..
gi 442617143 1563 HL 1564
Cdd:COG4987 555 EL 556
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
531-730 |
4.50e-14 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 73.56 E-value: 4.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 531 VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPP----TSGTAIINGSDIRTN-IEGARMSLGICPQHNVLFDEMSV 605
Cdd:TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPgltqTSGEILLDGRPLLPLsIRGRHIATIMQNPRTAFNPLFTM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 606 SNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASS---KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSAR 682
Cdd:TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKypfQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQ 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 683 RQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTSF 730
Cdd:TIGR02770 162 ARVLKLLRelRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVK 211
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
1351-1564 |
4.99e-14 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 75.53 E-value: 4.99e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1351 RVTKYYGQFMAvnQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIY-----KMIGYCP 1425
Cdd:TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFlppekRRIGYVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1426 QFDALLDDLTGREVLRI---FCM--LRGVQESRIRQLsedlaksFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIY 1500
Cdd:TIGR02142 82 QEARLFPHLSVRGNLRYgmkRARpsERRISFERVIEL-------LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1501 LDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEfGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
527-729 |
5.81e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 73.93 E-value: 5.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 527 NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFP------PTSGTAIINGSDI-RTNIEGARMSLGICPQHNVL 599
Cdd:PRK14246 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEiydskiKVDGKVLYFGKDIfQIDAIKLRKEVGMVFQQPNP 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 600 FDEMSVSNHIRFFSRMKGLR-----GKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:PRK14246 102 FPHLSIYDNIAYPLKSHGIKekreiKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPT 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 675 SGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:PRK14246 182 SMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1362-1571 |
5.87e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 74.00 E-value: 5.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGYC---P--QF--DALLDD 1433
Cdd:PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLtEENVWDIRHKIGMVfqnPdnQFvgATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1434 LT-GREVlrifcmlRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAA 1512
Cdd:PRK13650 103 VAfGLEN-------KGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1513 RRQLWNMVCRIRDSGKSIVLT-SHSMEECeALCTRLAIMVNGEFKCIGSTQHLknkFSKG 1571
Cdd:PRK13650 176 RLELIKTIKGIRDDYQMTVISiTHDLDEV-ALSDRVLVMKNGQVESTSTPREL---FSRG 231
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
1349-1567 |
5.97e-14 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 77.47 E-value: 5.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCV---QEVecfGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES--NMNSIYKMIGY 1423
Cdd:NF033858 4 LEGVSHRYGKTVALDDVSLDIpagCMV---GLIGPDGVGKSSLLSLIAGARKIQQGRVEVLGGDMADarHRRAVCPRIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1424 CPQF--DALLDDLTGREVL----RIFCMLRGVQESRIrqlsEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPS 1497
Cdd:NF033858 81 MPQGlgKNLYPTLSVFENLdffgRLFGQDAAERRRRI----DELLRATGLAPFADRPAGKLSGGMKQKLGLCCALIHDPD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRIRDS--GKS-IVLTSHsMEECEAlCTRLAIMVNGEFKCIGSTQHLKNK 1567
Cdd:NF033858 157 LLILDEPTTGVDPLSRRQFWELIDRIRAErpGMSvLVATAY-MEEAER-FDWLVAMDAGRVLATGTPAELLAR 227
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
1347-1554 |
6.80e-14 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 71.26 E-value: 6.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFM--AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGY 1423
Cdd:cd03228 1 IEFKNVSFSYPGRPkpVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLrDLDLESLRKNIAY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1424 CPQFDALLDDlTGRE-VLrifcmlrgvqesrirqlsedlaksfgfmkhidkqthaySGGNKRKLSTAIAVIGSPSVIYLD 1502
Cdd:cd03228 81 VPQDPFLFSG-TIREnIL--------------------------------------SGGQRQRIAIARALLRDPPILILD 121
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1503 EPTTGMDPAARRQLWNMVCRIRDsGKSIVLTSHSMEECEaLCTRLAIMVNGE 1554
Cdd:cd03228 122 EATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIR-DADRIIVLDDGR 171
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
516-721 |
7.18e-14 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 76.49 E-value: 7.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQ 595
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 HNVL--FDEMSVSNHI---RFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:PRK11288 85 YQELhlVPEMTVAENLylgQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAF 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 671 DEPSSGMdpSAR--RQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDG 721
Cdd:PRK11288 165 DEPTSSL--SAReiEQLFRVIRELRAeGRVILYVSHRMEEIFALCDAITVFKDG 216
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
1347-1554 |
7.84e-14 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 72.44 E-value: 7.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYY-GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIYKMI 1421
Cdd:cd03292 1 IEFINVTKTYpNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVsdlrGRAIPYLRRKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1502 DEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGK 213
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
514-723 |
9.84e-14 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 73.17 E-value: 9.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 514 IGLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGtAIINGS--------DIRTNIEG 585
Cdd:PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-ELLAGTaplaeareDTRLMFQD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 586 ARMslgiCPQHNVLfDEMSVsnhirffsrmkGLRGKAVEQEVaKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDT 665
Cdd:PRK11247 90 ARL----LPWKKVI-DNVGL-----------GLKGQWRDAAL-QALAAVGLADRANEWPAALSGGQKQRVALARALIHRP 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 666 KVVLCDEPSSGMDPSARRQLWDL---LQQEKvGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK11247 153 GLLLLDEPLGALDALTRIEMQDLiesLWQQH-GFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
1344-1566 |
1.05e-13 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 75.07 E-value: 1.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1344 TKNLVLDRVtkyyGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIY- 1418
Cdd:PRK10070 30 SKEQILEKT----GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIakisDAELREVRr 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1419 KMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSV 1498
Cdd:PRK10070 106 KKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1499 IYLDEPTTGMDPAARRQLWNMVCRIR-DSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKN 1566
Cdd:PRK10070 186 LLMDEAFSALDPLIRTEMQDELVKLQaKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
516-729 |
1.69e-13 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 72.51 E-value: 1.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKM---------VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING-----SDIRT 581
Cdd:PRK15112 5 LEVRNLSKTFRYRTgwfrrqtveAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDhplhfGDYSY 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 582 NIEGARMslgicpqhnvLFDEMSVSNHIR--------FFSRMK-GLRGKAVEQEVAKYLKMIEL-EDKANVASSKLSGGM 651
Cdd:PRK15112 85 RSQRIRM----------IFQDPSTSLNPRqrisqildFPLRLNtDLEPEQREKQIIETLRQVGLlPDHASYYPHMLAPGQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 652 KRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLL--QQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMleLQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGST 234
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1362-1558 |
1.85e-13 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 75.21 E-value: 1.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG--LSLESNMNSIYKMIGYC----------PQFD- 1428
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGkdISPRSPLDAVKKGMAYItesrrdngffPNFSi 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1429 ----ALLDDL-TGRevlrifcmLRG----VQESRIRQLSEDLAKSFGFMKH-IDKQTHAYSGGNKRKLSTAIAVIGSPSV 1498
Cdd:PRK09700 359 aqnmAISRSLkDGG--------YKGamglFHEVDEQRTAENQRELLALKCHsVNQNITELSGGNQQKVLISKWLCCCPEV 430
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1499 IYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCI 1558
Cdd:PRK09700 431 IIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
1349-1505 |
2.40e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 74.72 E-value: 2.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQ-GLSlesnmnsiykmIGYCPQF 1427
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPkGLR-----------IGYLPQE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1428 DALLDDLTGREVlrifcMLRGVQE-----SRIRQLSEDLAKSFGFMKHI------------------------------- 1471
Cdd:COG0488 70 PPLDDDLTVLDT-----VLDGDAElraleAELEELEAKLAEPDEDLERLaelqeefealggweaearaeeilsglgfpee 144
|
170 180 190
....*....|....*....|....*....|....*.
gi 442617143 1472 --DKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPT 1505
Cdd:COG0488 145 dlDRPVSELSGGWRRRVALARALLSEPDLLLLDEPT 180
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
516-716 |
2.46e-13 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 72.12 E-value: 2.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTI---SMLTGMFPP--TSGTAIINGSDI---RTNIEGAR 587
Cdd:PRK14243 11 LRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILrcfNRLNDLIPGfrVEGKVTFHGKNLyapDVDPVEVR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 588 MSLGICPQHNVLFDEmSVSNHIRFFSRMKGLRG---KAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGD 664
Cdd:PRK14243 91 RRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGdmdELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 665 TKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIA 716
Cdd:PRK14243 170 PEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTA 221
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
1351-1553 |
2.62e-13 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 71.28 E-value: 2.62e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1351 RVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLS------------LESNMnsIY 1418
Cdd:PRK09493 6 NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKvndpkvderlirQEAGM--VF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1419 KMIGYCPQFDALLDDLTG-REVlrifcmlRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPS 1497
Cdd:PRK09493 84 QQFYLFPHLTALENVMFGpLRV-------RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPK 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKG 212
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
525-727 |
2.73e-13 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 73.72 E-value: 2.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 525 FGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR-TNIEGARMSLGICPQHNVL---F 600
Cdd:PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEaLSARAASRRVASVPQDTSLsfeF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 601 D-----EMSVSNHIRFFSRMKGLRGKAVEQEVAKylkmIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:PRK09536 93 DvrqvvEMGRTPHRSRFDTWTETDRAAVERAMER----TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 676 GMDpsARRQLWDL-LQQEKV--GRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK09536 169 SLD--INHQVRTLeLVRRLVddGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1342-1556 |
2.80e-13 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 70.96 E-value: 2.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1342 LATKNLV-LDRVTKYYGQ----FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNS 1416
Cdd:PRK10584 1 MPAENIVeVHHLKKSVGQgeheLSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL-HQMDE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1417 ------IYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAI 1490
Cdd:PRK10584 80 earaklRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 1491 AVIGSPSVIYLDEPTTGMDpaarRQLWNMVCRI-----RDSGKSIVLTSHSmEECEALCTRLAIMVNGEFK 1556
Cdd:PRK10584 160 AFNGRPDVLFADEPTGNLD----RQTGDKIADLlfslnREHGTTLILVTHD-LQLAARCDRRLRLVNGQLQ 225
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
530-703 |
2.83e-13 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 70.96 E-value: 2.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 530 VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDEmSVSNH 608
Cdd:cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQyEHKYLHSKVSLVGQEPVLFAR-SLQDN 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 609 IRFfsrmkGLRGKAVEqevakylKMIELEDKANVAS-----------------SKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:cd03248 108 IAY-----GLQSCSFE-------CVKEAAQKAHAHSfiselasgydtevgekgSQLSGGQKQRVAIARALIRNPQVLILD 175
|
170 180 190
....*....|....*....|....*....|..
gi 442617143 672 EPSSGMDPSARRQLWDLLQQEKVGRTLLLTTH 703
Cdd:cd03248 176 EATSALDAESEQQVQQALYDWPERRTVLVIAH 207
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
516-729 |
3.39e-13 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 71.20 E-value: 3.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGS--DIRTN-----IEGARM 588
Cdd:PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNhfDFSKTpsdkaIRELRR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 589 SLGICPQHNVLFDEMSV-SNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKV 667
Cdd:PRK11124 83 NVGMVFQQYNLWPHLTVqQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 668 VLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:PRK11124 163 LLFDEPTAALDPEITAQIVSIIRElAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
|
| COG4674 |
COG4674 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
1337-1566 |
3.69e-13 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443710 [Multi-domain] Cd Length: 250 Bit Score: 71.30 E-value: 3.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1337 MSSNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNS 1416
Cdd:COG4674 1 MSLDTMHGPILYVEDLTVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTLMDVITGKTRPDSGSVLFGGTDL-TGLDE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1417 --IYKM-IGYCPQFDALLDDLTGREVLRI------------FCMLRGVQESRIrqlsEDLAKSFGFMKHIDKQTHAYSGG 1481
Cdd:COG4674 80 heIARLgIGRKFQKPTVFEELTVFENLELalkgdrgvfaslFARLTAEERDRI----EEVLETIGLTDKADRLAGLLSHG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1482 NKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRdSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGST 1561
Cdd:COG4674 156 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETERTAELLKSLA-GKHSVVVVEHDMEFVRQIARKVTVLHQGSVLAEGSL 234
|
....*
gi 442617143 1562 QHLKN 1566
Cdd:COG4674 235 DEVQA 239
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
515-718 |
3.88e-13 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 73.14 E-value: 3.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINgsDIRTN-IEGARMSLGIC 593
Cdd:PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG--EKRMNdVPPAERGVGMV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSVSNHIRFFSRM----KGLRGKAVEQeVAKYLKMIELEDKANVAsskLSGGMKRKLSVCCALCGDTKVVL 669
Cdd:PRK11000 81 FQSYALYPHLSVAENMSFGLKLagakKEEINQRVNQ-VAEVLQLAHLLDRKPKA---LSGGQRQRVAIGRTLVAEPSVFL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 442617143 670 CDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIM 718
Cdd:PRK11000 157 LDEPLSNLDAALRVQMRIEISrlHKRLGRTMIYVTHDQVEAMTLADKIVVL 207
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
1344-1560 |
4.74e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 71.58 E-value: 4.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1344 TKNLVLDRVTKYYG-----QFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSI- 1417
Cdd:PRK13645 4 SKDIILDNVSYTYAkktpfEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIk 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1418 -----YKMIGYCPQFD--ALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAI 1490
Cdd:PRK13645 84 evkrlRKEIGLVFQFPeyQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 1491 AVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGS 1560
Cdd:PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLnKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1361-1564 |
5.04e-13 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 71.20 E-value: 5.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGYC---P--QF--DALLD 1432
Cdd:PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLsEETVWDVRRQVGMVfqnPdnQFvgATVQD 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1433 D----LTGREVLRIFcMLRGVQESrIRQLsedlaksfGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGM 1508
Cdd:PRK13635 102 DvafgLENIGVPREE-MVERVDQA-LRQV--------GMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1509 DPAARRQLWNMVCRIRDSGKSIVLT-SHSMEECeALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK13635 172 DPRGRREVLETVRQLKEQKGITVLSiTHDLDEA-AQADRVIVMNKGEILEEGTPEEI 227
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
531-723 |
6.58e-13 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 73.13 E-value: 6.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 531 VKGLSMN-MFED--------EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGI--CP---QH 596
Cdd:COG1129 259 VEGLSVGgVVRDvsfsvragEILGIAGLVGAGRTELARALFGADPADSGEIRLDGKPVRIRSPRDAIRAGIayVPedrKG 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 597 NVLFDEMSVSNHI-----RFFSRMKGLRGKAVEQEVAKYLKmiELEDKA---NVASSKLSGGMKRKlsVCCA--LCGDTK 666
Cdd:COG1129 339 EGLVLDLSIRENItlaslDRLSRGGLLDRRRERALAEEYIK--RLRIKTpspEQPVGNLSGGNQQK--VVLAkwLATDPK 414
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 667 VVLCDEPSSGMDPSARRQLWDLLQQ--EKvGRTLLLTTHFMDEadVLG--DRIAIMCDGEL 723
Cdd:COG1129 415 VLILDEPTRGIDVGAKAEIYRLIRElaAE-GKAVIVISSELPE--LLGlsDRILVMREGRI 472
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
516-723 |
6.82e-13 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 70.64 E-value: 6.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMF-----PPTSGTAIINGSDIRTN----IEgA 586
Cdd:PRK14267 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLelneeARVEGEVRLFGRNIYSPdvdpIE-V 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 587 RMSLGICPQHNVLFDEMSVSNHIRFFSRMKGL-RGKAVEQEVAKY-LKMI----ELEDKANVASSKLSGGMKRKLSVCCA 660
Cdd:PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLvKSKKELDERVEWaLKKAalwdEVKDRLNDYPSNLSGGQRQRLVIARA 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 661 LCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
1325-1535 |
7.15e-13 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 73.71 E-value: 7.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1325 DDVAN---ERERILQMSSNELATKNLVLDRVTKYYGQF--MAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERIS 1399
Cdd:COG2274 449 DDILDlppEREEGRSKLSLPRLKGDIELENVSFRYPGDspPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYEPT 528
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1400 SGAAYVQGLSLES-NMNSIYKMIGYCPQFDALLDDlTGREVLRIFCmlRGVQESRIRQlsedLAKSFGFMKHIDKQTHAY 1478
Cdd:COG2274 529 SGRILIDGIDLRQiDPASLRRQIGVVLQDVFLFSG-TIRENITLGD--PDATDEEIIE----AARLAGLHDFIEALPMGY 601
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 1479 -----------SGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRdSGKSIVLTSH 1535
Cdd:COG2274 602 dtvvgeggsnlSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLL-KGRTVIIIAH 668
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
518-707 |
7.79e-13 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 73.18 E-value: 7.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 518 MRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGsdirtnieGARMslGICPQHN 597
Cdd:COG0488 1 LENLSKSFGGRPLLDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEPDSGEVSIPK--------GLRI--GYLPQEP 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 598 VLFDEMSVSNHIrffsrMKGLRG-KAVEQEVAK-----------YLKMIELEDK----------ANVAS----------- 644
Cdd:COG0488 71 PLDDDLTVLDTV-----LDGDAElRALEAELEEleaklaepdedLERLAELQEEfealggweaeARAEEilsglgfpeed 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 645 -----SKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKvGrTLLLTTH---FMDE 707
Cdd:COG0488 146 ldrpvSELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLESIEWLEEFLKNYP-G-TVLVVSHdryFLDR 214
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
1347-1550 |
8.54e-13 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 70.28 E-value: 8.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFM----AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESnmnsiykmig 1422
Cdd:COG4525 4 LTVRHVSVRYPGGGqpqpALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLAPSSGEITLDGVPVTG---------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 ycP--------QFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIG 1494
Cdd:COG4525 74 --PgadrgvvfQKDALLPWLNVLDNVAFGLRLRGVPKAERRARAEELLALVGLADFARRRIWQLSGGMRQRVGIARALAA 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1495 SPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIM 1550
Cdd:COG4525 152 DPRFLLMDEPFGALDALTREQMQELLLDVwQRTGKGVFLITHSVEEALFLATRLVVM 208
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
528-727 |
9.05e-13 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 70.11 E-value: 9.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 528 KMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPP----TSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDEM 603
Cdd:PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAgvrqTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 604 -SVSNHIRFFSRMKGlrGKAVEQEVAKYLKMIELEDKANVASS---KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDP 679
Cdd:PRK10418 96 hTMHTHARETCLALG--KPADDATLTAALEAVGLENAARVLKLypfEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 680 SARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK10418 174 VAQARILDLLESivQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
516-742 |
1.31e-12 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 69.44 E-value: 1.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFG--NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGI 592
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEmSVSNHIRFfsrmkGLRGKAVEQ--EVAKY-------LKMIELEDK-ANVASSKLSGGMKRKLSVCCALC 662
Cdd:cd03252 81 VLQENVLFNR-SIRDNIAL-----ADPGMSMERviEAAKLagahdfiSELPEGYDTiVGEQGAGLSGGQRQRIAIARALI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 663 GDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMdEADVLGDRIAIMCDGELKCQGTSFFLKKQYGSGYRL 742
Cdd:cd03252 155 HNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRL-STVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
516-707 |
1.86e-12 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 66.32 E-value: 1.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTaIINGSDIRtniegarmslgicpq 595
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTVK--------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 hnvlfdemsvsnhIRFFsrmkglrgkaveqevakylkmieledkanvasSKLSGGMKRKLSVCCALCGDTKVVLCDEPSS 675
Cdd:cd03221 65 -------------IGYF--------------------------------EQLSGGEKMRLALAKLLLENPNLLLLDEPTN 99
|
170 180 190
....*....|....*....|....*....|....*
gi 442617143 676 GMDPSARRQLWDLLQQEKvgRTLLLTTH---FMDE 707
Cdd:cd03221 100 HLDLESIEALEEALKEYP--GTVILVSHdryFLDQ 132
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
518-728 |
2.07e-12 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 68.95 E-value: 2.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 518 MRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGsdirtniegaRMS--LGIcpq 595
Cdd:COG1134 29 LRRRRTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEPTSGRVEVNG----------RVSalLEL--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 596 hNVLFD-EMSVSNHIRFFSRMKGLRgkavEQEVAKYLKMI----ELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:COG1134 96 -GAGFHpELTGRENIYLNGRLLGLS----RKEIDEKFDEIvefaELGDFIDQPVKTYSSGMRARLAFAVATAVDPDILLV 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 671 DEPSSGMDPS----ARRQLWDLLQQekvGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:COG1134 171 DEVLAVGDAAfqkkCLARIRELRES---GRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGD 229
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1310-1559 |
2.08e-12 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 72.20 E-value: 2.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1310 LISKPPPPPTEGQLDDDVANERERILQMSS--NELATKNLVLDRVTKyygQFMAVNQVSLCVQEVECFGLLGVNGAGKTT 1387
Cdd:PRK10261 289 LISLEHPAKQEPPIEQDTVVDGEPILQVRNlvTRFPLRSGLLNRVTR---EVHAVEKVSFDLWPGETLSLVGESGSGKST 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1388 TFKMMTGDERISSGAAYVQGLSLE----SNMNSIYKMIGYCPQfD--ALLD-----DLTGREVLRIFCMLRGvqESRIRQ 1456
Cdd:PRK10261 366 TGRALLRLVESQGGEIIFNGQRIDtlspGKLQALRRDIQFIFQ-DpyASLDprqtvGDSIMEPLRVHGLLPG--KAAAAR 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1457 LSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSH 1535
Cdd:PRK10261 443 VAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLqRDFGIAYLFISH 522
|
250 260
....*....|....*....|....
gi 442617143 1536 SMEECEALCTRLAIMVNGEFKCIG 1559
Cdd:PRK10261 523 DMAVVERISHRVAVMYLGQIVEIG 546
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
530-728 |
2.54e-12 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 71.78 E-value: 2.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 530 VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGArmslgicpqhnvLFDEMS-VSNH 608
Cdd:PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAA------------LRQAISvVSQR 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 609 IRFFSrmKGLRG-------KAVEQEVAKYLKMIELEDKANVASS----------KLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:PRK11160 423 VHLFS--ATLRDnlllaapNASDEALIEVLQQVGLEKLLEDDKGlnawlgeggrQLSGGEQRRLGIARALLHDAPLLLLD 500
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 672 EPSSGMDPSARRQLWDLLQQEKVGRTLLLTTH---FMDEAdvlgDRIAIMCDGELKCQGT 728
Cdd:PRK11160 501 EPTEGLDAETERQILELLAEHAQNKTVLMITHrltGLEQF----DRICVMDNGQIIEQGT 556
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
516-729 |
2.56e-12 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 71.37 E-value: 2.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGM--FPPTSGTAI-------------------- 573
Cdd:TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMdqYEPTSGRIIyhvalcekcgyverpskvge 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 574 ----------------INGSD-IRTNIegaRMSLGICPQHN-VLFDEMSV-SNHIRFFSRMkGLRGKAVEQEVAKYLKMI 634
Cdd:TIGR03269 81 pcpvcggtlepeevdfWNLSDkLRRRI---RKRIAIMLQRTfALYGDDTVlDNVLEALEEI-GYEGKEAVGRAVDLIEMV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 635 ELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLG 712
Cdd:TIGR03269 157 QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEavKASGISMVLTSHWPEVIEDLS 236
|
250
....*....|....*..
gi 442617143 713 DRIAIMCDGELKCQGTS 729
Cdd:TIGR03269 237 DKAIWLENGEIKEEGTP 253
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
526-723 |
2.92e-12 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 66.86 E-value: 2.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDEmS 604
Cdd:cd03246 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQwDPNELGDHVGYLPQDDELFSG-S 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 605 VSNHIrffsrmkglrgkaveqevakylkmieledkanvasskLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQ 684
Cdd:cd03246 92 IAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 442617143 685 LWDLLQQEKV-GRTLLLTTHFMdEADVLGDRIAIMCDGEL 723
Cdd:cd03246 135 LNQAIAALKAaGATRIVIAHRP-ETLASADRILVLEDGRV 173
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
517-728 |
2.97e-12 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 71.53 E-value: 2.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 517 QMRHLKKRFGNK-MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICP 594
Cdd:PRK13657 336 EFDDVSFSYDNSrQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTvTRASLRRNIAVVF 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QHNVLFDEmSVSNHIRFfsrmkglrGK--AVEQEVAKYLKMIELED---------KANVAS--SKLSGGMKRKLSVCCAL 661
Cdd:PRK13657 416 QDAGLFNR-SIEDNIRV--------GRpdATDEEMRAAAERAQAHDfierkpdgyDTVVGErgRQLSGGERQRLAIARAL 486
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 662 CGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMD---EAdvlgDRIAIMCDGELKCQGT 728
Cdd:PRK13657 487 LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLStvrNA----DRILVFDNGRVVESGS 552
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
516-722 |
2.98e-12 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 71.01 E-value: 2.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFP--PTSGTAIINGSDIR-TNI-EGARMSLG 591
Cdd:TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhgTWDGEIYWSGSPLKaSNIrDTERAGIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHIrFFSRMKGLRGK-----AVEQEVAKYLKMIELEDKANVAS-SKLSGGMKRKLSVCCALCGDT 665
Cdd:TIGR02633 82 IIHQELTLVPELSVAENI-FLGNEITLPGGrmaynAMYLRAKNLLRELQLDADNVTRPvGDYGGGQQQLVEIAKALNKQA 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 666 KVVLCDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAhGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
1363-1571 |
3.43e-12 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 71.23 E-value: 3.43e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1363 NQVSLCVQEVECFGLLGVNGAGKTT-----TFKMMTGDERisSGAAYVQGLSLESNMnsIYKMIGYCPQFDALLDDLTGR 1437
Cdd:TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTlmnalAFRSPKGVKG--SGSVLLNGMPIDAKE--MRAISAYVQQDDLFIPTLTVR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1438 EVLRIFCMLR-------GVQESRIRQLSEDLA---------KSFGFMKHIdkqthaySGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:TIGR00955 118 EHLMFQAHLRmprrvtkKEKRERVDEVLQALGlrkcantriGVPGRVKGL-------SGGERKRLAFASELLTDPPLLFC 190
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1502 DEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSH--SMEECEaLCTRLAIMVNGEFKCIGSTQHLKNKFSKG 1571
Cdd:TIGR00955 191 DEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHqpSSELFE-LFDKIILMAEGRVAYLGSPDQAVPFFSDL 261
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
516-743 |
3.72e-12 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 68.50 E-value: 3.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFP----PTS-----GTAIINGSDIRTNIEGA 586
Cdd:PRK09984 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITgdksAGShiellGRTVQREGRLARDIRKS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 587 RMSLGICPQHNVLFDEMSVSNHI---------------RFFSRMKglrgkavEQEVAKYLKMIELEDKANVASSKLSGGM 651
Cdd:PRK09984 85 RANTGYIFQQFNLVNRLSVLENVligalgstpfwrtcfSWFTREQ-------KQRALQALTRVGMVHFAHQRVSTLSGGQ 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 652 KRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:PRK09984 158 QQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRdiNQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
250
....*....|....*
gi 442617143 730 -FFLKKQYGSGYRLI 743
Cdd:PRK09984 238 qQFDNERFDHLYRSI 252
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1361-1553 |
3.76e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 68.72 E-value: 3.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKM---IGYCPQF-DALLDDLTG 1436
Cdd:PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLresVGMVFQDpDNQLFSASV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1437 REVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQL 1516
Cdd:PRK13636 101 YQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
|
170 180 190
....*....|....*....|....*....|....*...
gi 442617143 1517 WNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:PRK13636 181 MKLLVEMqKELGLTIIIATHDIDIVPLYCDNVFVMKEG 218
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1356-1559 |
4.02e-12 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 70.26 E-value: 4.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1356 YGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGYCPQFDALLDDL 1434
Cdd:PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAlSARAASRRVASVPQDTSLSFEF 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1435 TGREVLRifcMLRGVQESRI-------RQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTG 1507
Cdd:PRK09536 93 DVRQVVE---MGRTPHRSRFdtwtetdRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTAS 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1508 MDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIG 1559
Cdd:PRK09536 170 LDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
1347-1536 |
4.75e-12 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 70.47 E-value: 4.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVT-KYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGYC 1424
Cdd:TIGR02868 335 LELRDLSaGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSlDQDEVRRRVSVC 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQfDALLDDLTGREVLRIFC----------MLRGVQ-ESRIRQLSEDLAKSFGFMkhidkqTHAYSGGNKRKLSTAIAVI 1493
Cdd:TIGR02868 415 AQ-DAHLFDTTVRENLRLARpdatdeelwaALERVGlADWLRALPDGLDTVLGEG------GARLSGGERQRLALARALL 487
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 442617143 1494 GSPSVIYLDEPTTGMDPAARRQLWNMVcRIRDSGKSIVLTSHS 1536
Cdd:TIGR02868 488 ADAPILLLDEPTEHLDAETADELLEDL-LAALSGRTVVLITHH 529
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1347-1555 |
4.99e-12 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 70.33 E-value: 4.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGL---------SLESNMNSI 1417
Cdd:PRK11288 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQemrfasttaALAAGVAII 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1418 YKMIGYCPqfdalldDLTGREVLrifcML-----RG--VQESRIRQLSEDLAKSFGFmkHIDKQTH-AY-SGGNKRKLST 1488
Cdd:PRK11288 85 YQELHLVP-------EMTVAENL----YLgqlphKGgiVNRRLLNYEAREQLEHLGV--DIDPDTPlKYlSIGQRQMVEI 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1489 AIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:PRK11288 152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRY 218
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
1376-1554 |
5.44e-12 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 68.11 E-value: 5.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1376 GLLGVNGAGKTTTFKMMTGDERISSGAAYVQG----------LSLESNMNSIYKMigycPQFDALLDDLTGRevlrIFCM 1445
Cdd:PRK13638 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGkpldyskrglLALRQQVATVFQD----PEQQIFYTDIDSD----IAFS 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1446 LR--GVQESRIRQLSEDlAKSFGFMKHIDKQ-THAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCR 1522
Cdd:PRK13638 103 LRnlGVPEAEITRRVDE-ALTLVDAQHFRHQpIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
|
170 180 190
....*....|....*....|....*....|..
gi 442617143 1523 IRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK13638 182 IVAQGNHVIISSHDIDLIYEISDAVYVLRQGQ 213
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1334-1560 |
5.76e-12 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 69.59 E-value: 5.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1334 ILQMSSNELATKNLV-LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-- 1410
Cdd:PRK09452 1 SKKLNKQPSSLSPLVeLRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIth 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1411 ----ESNMNSIYkmigycpQFDALLDDLTGRE-V---LRifcmLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGN 1482
Cdd:PRK09452 81 vpaeNRHVNTVF-------QSYALFPHMTVFEnVafgLR----MQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1483 KRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGS 1560
Cdd:PRK09452 150 QQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALqRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
519-723 |
5.99e-12 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 68.57 E-value: 5.99e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 519 RHLKKRFGNKM-----VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT------------ 581
Cdd:PRK13651 6 KNIVKIFNKKLptelkALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNkkktkekekvle 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 582 -------------NIEGARMSLGICPQ--HNVLFdEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIEL-EDKANVASS 645
Cdd:PRK13651 86 klviqktrfkkikKIKEIRRRVGVVFQfaEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLdESYLQRSPF 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 646 KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK13651 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNlNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
1359-1572 |
6.54e-12 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 67.92 E-value: 6.54e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1359 FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGlslESNMNSIYKmigycpqfdALLDDLTGRE 1438
Cdd:PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG---EVSVIAISA---------GLSGQLTGIE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1439 VLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWN 1518
Cdd:PRK13546 105 NIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1519 MVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNKFSKGL 1572
Cdd:PRK13546 185 KIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFL 238
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
531-723 |
7.34e-12 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 70.03 E-value: 7.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 531 VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIC-----PQHNVLFDEMSV 605
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVyisedRKRDGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 606 SNH-----IRFFSRMKG-LRGKAVEQEVAKYLKMIELEDKA-NVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMD 678
Cdd:PRK10762 348 KENmsltaLRYFSRAGGsLKHADEQQAVSDFIRLFNIKTPSmEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 442617143 679 PSARRQLWDLLQQEKV-GRTLLLTTHFMDEadVLG--DRIAIMCDGEL 723
Cdd:PRK10762 428 VGAKKEIYQLINQFKAeGLSIILVSSEMPE--VLGmsDRILVMHEGRI 473
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
1352-1537 |
7.85e-12 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 66.40 E-value: 7.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1352 VTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYC----PQF 1427
Cdd:cd03262 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVgmvfQQF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1428 D-----ALLDDLTgrEVLRIfcmLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLD 1502
Cdd:cd03262 86 NlfphlTVLENIT--LAPIK---VKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160
|
170 180 190
....*....|....*....|....*....|....*
gi 442617143 1503 EPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSM 1537
Cdd:cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM 195
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
1342-1535 |
1.16e-11 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 65.59 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1342 LATKNLVLDRvtkyyGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMI 1421
Cdd:cd03231 1 LEADELTCER-----DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GYCPQFDALLDDLTGREVLRIFCMLRGVQesrirQLSEDLAKsFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:cd03231 76 LYLGHAPGIKTTLSVLENLRFWHADHSDE-----QVEEALAR-VGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWIL 149
|
170 180 190
....*....|....*....|....*....|....
gi 442617143 1502 DEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSH 1535
Cdd:cd03231 150 DEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
534-723 |
1.30e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 69.31 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 534 LSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIC--P---QHNVLFDEMSVS-- 606
Cdd:PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVylPedrQSSGLYLDAPLAwn 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 607 ------NHIRFFSRMKglRGKAVEQEVAKYLKmIELEDkANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPS 680
Cdd:PRK15439 362 vcalthNRRGFWIKPA--RENAVLERYRRALN-IKFNH-AEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 442617143 681 ARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK15439 438 ARNDIYQLIRSiAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
526-728 |
1.83e-11 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 69.01 E-value: 1.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDEmS 604
Cdd:COG4618 343 SKRPILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwDREELGRHIGYLPQDVELFDG-T 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 605 VSNHIrffSRMKGLRGKAVEqEVAKylkmieledKANV-----------------ASSKLSGGMKRKLSVCCALCGDTKV 667
Cdd:COG4618 422 IAENI---ARFGDADPEKVV-AAAK---------LAGVhemilrlpdgydtrigeGGARLSGGQRQRIGLARALYGDPRL 488
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 668 VLCDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTH---FMDEAdvlgDRIAIMCDGELKCQGT 728
Cdd:COG4618 489 VVLDEPNSNLDDEGEAALAAAIRALKArGATVVVITHrpsLLAAV----DKLLVLRDGRVQAFGP 549
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
1349-1554 |
3.60e-11 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 66.75 E-value: 3.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQ----FMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIYKM 1420
Cdd:PRK11153 4 LKNISKVFPQggrtIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLtalsEKELRKARRQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 IGYCPQFDALLddlTGREV-------LRifcmLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVI 1493
Cdd:PRK11153 84 IGMIFQHFNLL---SSRTVfdnvalpLE----LAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1494 GSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDInRELGLTIVLITHEMDVVKRICDRVAVIDAGR 218
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
1381-1584 |
3.90e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 65.81 E-value: 3.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1381 NGAGKTTTFKMMTGDERISSGAAyvqglslESNMNSIYKMIGYCPQF-DALLDDLTgreVLRIFC---MLRGVQESRIRQ 1456
Cdd:PRK13634 54 NGLLQPTSGTVTIGERVITAGKK-------NKKLKPLRKKVGIVFQFpEHQLFEET---VEKDICfgpMNFGVSEEDAKQ 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1457 LSEDLAKSFGFMKHI-DKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTS 1534
Cdd:PRK13634 124 KAREMIELVGLPEELlARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLhKEKGLTTVLVT 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1535 HSMEECEALCTRLAIMVNGEFKCIGSTQHLknkFSKGLILK---------IKVRRNLEA 1584
Cdd:PRK13634 204 HSMEDAARYADQIVVMHKGTVFLQGTPREI---FADPDELEaigldlpetVKFKRALEE 259
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
516-722 |
4.16e-11 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 65.33 E-value: 4.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING-----SDIRTNIEGARMSL 590
Cdd:PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMrdgqlRDLYALSEAERRRL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 -----GICPQH-------------NVLFDEMSVSNhiRFFSRmkgLRGKAVEqevakYLKMIELE-DKANVASSKLSGGM 651
Cdd:PRK11701 87 lrtewGFVHQHprdglrmqvsaggNIGERLMAVGA--RHYGD---IRATAGD-----WLERVEIDaARIDDLPTTFSGGM 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 652 KRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGlvRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
1361-1539 |
4.94e-11 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 65.53 E-value: 4.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG-----DERISSGAAYVQGLSLESNMNSIYKMIGYCPQF--DALLDD 1433
Cdd:PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGllqptEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFpeSQLFEE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1434 LTGREVL---RIFcmlrGVQESRIRQLSEDLAKSFGFMKHI-DKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMD 1509
Cdd:PRK13643 101 TVLKDVAfgpQNF----GIPKEKAEKIAAEKLEMVGLADEFwEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
|
170 180 190
....*....|....*....|....*....|
gi 442617143 1510 PAARRQLWNMVCRIRDSGKSIVLTSHSMEE 1539
Cdd:PRK13643 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDD 206
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
1347-1535 |
5.94e-11 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 62.08 E-value: 5.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGaayvqglSLESNMNSiykMIGYCPQ 1426
Cdd:cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-------IVTWGSTV---KIGYFEQ 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 FdallddltgrevlrifcmlrgvqesrirqlsedlaksfgfmkhidkqthaySGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:cd03221 71 L---------------------------------------------------SGGEKMRLALAKLLLENPNLLLLDEPTN 99
|
170 180
....*....|....*....|....*....
gi 442617143 1507 GMDPAARRQLWNMvcrIRDSGKSIVLTSH 1535
Cdd:cd03221 100 HLDLESIEALEEA---LKEYPGTVILVSH 125
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
516-707 |
6.36e-11 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 63.96 E-value: 6.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICP 594
Cdd:PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTlKPEIYRQQVSYCA 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QHNVLFDEmSVSNHIRFFSRmkgLRGKAVE-QEVAKYLKMIELED---KANVASskLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:PRK10247 88 QTPTLFGD-TVYDNLIFPWQ---IRNQQPDpAIFLDDLERFALPDtilTKNIAE--LSGGEKQRISLIRNLQFMPKVLLL 161
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 442617143 671 DEPSSGMDPSARRQLWDLL----QQEKVGrtLLLTTHFMDE 707
Cdd:PRK10247 162 DEITSALDESNKHNVNEIIhryvREQNIA--VLWVTHDKDE 200
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1361-1538 |
6.56e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 65.14 E-value: 6.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGYCPQfDAllDDltgrev 1439
Cdd:PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVnAENEKWVRSKVGLVFQ-DP--DD------ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1440 lRIFCML-----------RGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGM 1508
Cdd:PRK13647 91 -QVFSSTvwddvafgpvnMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYL 169
|
170 180 190
....*....|....*....|....*....|
gi 442617143 1509 DPAARRQLWNMVCRIRDSGKSIVLTSHSME 1538
Cdd:PRK13647 170 DPRGQETLMEILDRLHNQGKTVIVATHDVD 199
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1337-1537 |
8.33e-11 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 64.24 E-value: 8.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1337 MSSNELATKNLvldrvTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNS 1416
Cdd:PRK11300 1 MSQPLLSVSGL-----MMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1417 IYKMIGYCPQFD--ALLDDLTGREVL----------RIFCMLRGVQESRiRQLSEDLAKS------FGFMKHIDKQTHAY 1478
Cdd:PRK11300 76 QIARMGVVRTFQhvRLFREMTVIENLlvaqhqqlktGLFSGLLKTPAFR-RAESEALDRAatwlerVGLLEHANRQAGNL 154
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1479 SGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSM 1537
Cdd:PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEhNVTVLLIEHDM 214
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
1342-1535 |
8.36e-11 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 63.15 E-value: 8.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1342 LATKNLVLDRvtkyyGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMI 1421
Cdd:TIGR01189 1 LAARNLACSR-----GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTPLAEQRDEPHENI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GYCPQFDALLDDLTGREVLRIFCMLRGVQEsriRQLSEDLAKsFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:TIGR01189 76 LYLGHLPGLKPELSALENLHFWAAIHGGAQ---RTIEDALAA-VGLTGFEDLPAAQLSAGQQRRLALARLWLSRRPLWIL 151
|
170 180 190
....*....|....*....|....*....|....
gi 442617143 1502 DEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSH 1535
Cdd:TIGR01189 152 DEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
515-718 |
8.63e-11 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 65.63 E-value: 8.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHLKKRFGNKM-VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARMSLGIC 593
Cdd:PRK11650 3 GLKLQAVRKSYDGKTqVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV-NELEPADRDIAMV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSVSNHIRFFSRMKGLrGKA-VEQEVAKYLKMIELEDKANVASSKLSGG------MKRklsvccALCGDTK 666
Cdd:PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGM-PKAeIEERVAEAARILELEPLLDRKPRELSGGqrqrvaMGR------AIVREPA 154
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 667 VVLCDEPSSGMDPSAR-------RQLwdllqQEKVGRTLLLTTHFMDEADVLGDRIAIM 718
Cdd:PRK11650 155 VFLFDEPLSNLDAKLRvqmrleiQRL-----HRRLKTTSLYVTHDQVEAMTLADRVVVM 208
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1361-1539 |
8.98e-11 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 64.39 E-value: 8.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGYCpqFDALLDDLTGREV 1439
Cdd:PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDdNFEKLRKHIGIV--FQNPDNQFVGSIV 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1440 -------LRIFCMLRGVQESRIRQLSEDLaksfGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAA 1512
Cdd:PRK13648 102 kydvafgLENHAVPYDEMHRRVSEALKQV----DMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177
|
170 180
....*....|....*....|....*...
gi 442617143 1513 RRQLWNMVCRIR-DSGKSIVLTSHSMEE 1539
Cdd:PRK13648 178 RQNLLDLVRKVKsEHNITIISITHDLSE 205
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
525-728 |
9.29e-11 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 63.98 E-value: 9.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 525 FGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTaIINGSDIRtniegarmsLGICPQHNVLFDEMS 604
Cdd:PRK09544 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV-IKRNGKLR---------IGYVPQKLYLDTTLP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 605 VSnhirfFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQ 684
Cdd:PRK09544 84 LT-----VNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 442617143 685 LWDLLQQ--EKVGRTLLLTTHfmDEADVLGDRIAIMC-DGELKCQGT 728
Cdd:PRK09544 159 LYDLIDQlrRELDCAVLMVSH--DLHLVMAKTDEVLClNHHICCSGT 203
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
1349-1554 |
9.57e-11 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 65.48 E-value: 9.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYY----GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIYKM 1420
Cdd:COG1135 4 LENLSKTFptkgGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLERPTSGSVLVDGVDLtalsERELRAARRK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 IGYCPQFDALLDDLTGRE-V---LRIFCMLRGVQESRIRQLSE--DLAksfgfmkhiDKQtHAY----SGGNKRKLSTAI 1490
Cdd:COG1135 84 IGMIFQHFNLLSSRTVAEnValpLEIAGVPKAEIRKRVAELLElvGLS---------DKA-DAYpsqlSGGQKQRVGIAR 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1491 AVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:COG1135 154 ALANNPKVLLCDEATSALDPETTRSILDLLKDINRElGLTIVLITHEMDVVRRICDRVAVLENGR 218
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1347-1509 |
9.99e-11 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 63.68 E-value: 9.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYY--GQFMA--VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNSIYKM-- 1420
Cdd:PRK11629 6 LQCDNLCKRYqeGSVQTdvLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPM-SKLSSAAKAel 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 ----IGYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSP 1496
Cdd:PRK11629 85 rnqkLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP 164
|
170
....*....|...
gi 442617143 1497 SVIYLDEPTTGMD 1509
Cdd:PRK11629 165 RLVLADEPTGNLD 177
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
523-731 |
1.17e-10 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 66.22 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 523 KRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPP---TSGTAIINGSDIrtnieGARMSLGICP---QH 596
Cdd:TIGR00955 33 RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKgvkGSGSVLLNGMPI-----DAKEMRAISAyvqQD 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 597 NVLFDEMSVSNHIRFFS--RMKGLRGKAVEQE-VAKYLKMIELEDKANV------ASSKLSGGMKRKLSVCCALCGDTKV 667
Cdd:TIGR00955 108 DLFIPTLTVREHLMFQAhlRMPRRVTKKEKRErVDEVLQALGLRKCANTrigvpgRVKGLSGGERKRLAFASELLTDPPL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 668 VLCDEPSSGMDP----SARRQLWDLLQQekvGRTLLLTTHfMDEADV--LGDRIAIMCDGELKCQGT-----SFF 731
Cdd:TIGR00955 188 LFCDEPTSGLDSfmaySVVQVLKGLAQK---GKTIICTIH-QPSSELfeLFDKIILMAEGRVAYLGSpdqavPFF 258
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
1362-1554 |
1.61e-10 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 63.67 E-value: 1.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL----ESNMNSIYKMIGYCPQ--FDALLDDLT 1435
Cdd:TIGR02769 27 LTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLyqldRKQRRAFRRDVQLVFQdsPSAVNPRMT 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1436 GREVLR-----IFCMLRGVQESRIRQLSE--DLAKSfgfmkHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGM 1508
Cdd:TIGR02769 107 VRQIIGeplrhLTSLDESEQKARIAELLDmvGLRSE-----DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNL 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 442617143 1509 DPAARRQLWNMVCRIR-DSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:TIGR02769 182 DMVLQAVILELLRKLQqAFGTAYLFITHDLRLVQSFCQRVAVMDKGQ 228
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
1356-1539 |
1.64e-10 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 62.25 E-value: 1.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1356 YGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLslesnmnsiyKMIGYCPQFDALLDDL- 1434
Cdd:NF040873 2 YGGRPVLHGVDLTIPAGSLTAVVGPNGSGKSTLLKVLAGVLRPTSGTVRRAGG----------ARVAYVPQRSEVPDSLp 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1435 -TGREVLRifcMLRGVQESRIRQLS----------------EDLAKsfgfmkhidKQTHAYSGGNKRKLSTAIAVIGSPS 1497
Cdd:NF040873 72 lTVRDLVA---MGRWARRGLWRRLTrddraavddalervglADLAG---------RQLGELSGGQRQRALLAQGLAQEAD 139
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEE 1539
Cdd:NF040873 140 LLLLDEPTTGLDAESRERIIALLAEEHARGATVVVVTHDLEL 181
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
525-729 |
1.86e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 63.58 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 525 FGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSG-----TAIINGSDI--RTNIEGARMSLGICPQHN 597
Cdd:PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGyrysgDVLLGGRSIfnYRDVLEFRRRVGMLFQRP 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 598 VLFdEMSVSNHIRFFSRMKGLRGKAVEQEVAKyLKMIEL------EDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCD 671
Cdd:PRK14271 111 NPF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQ-ARLTEVglwdavKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD 188
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 672 EPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGTS 729
Cdd:PRK14271 189 EPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
1346-1562 |
2.02e-10 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 65.54 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1346 NLVLDRVT-KYYGQFMAV-NQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIG 1422
Cdd:COG4618 330 RLSVENLTvVPPGSKRPIlRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWPPTAGSVRLDGADLSQwDREELGRHIG 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQ----FD-------ALLDDLTGREVLRIfCMLRGVQEsRIRQLSEdlaksfGFMKHIDKQTHAYSGGNKRKLSTAIA 1491
Cdd:COG4618 410 YLPQdvelFDgtiaeniARFGDADPEKVVAA-AKLAGVHE-MILRLPD------GYDTRIGEGGARLSGGQRQRIGLARA 481
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1492 VIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMeecEAL--CTRLAIMVNGEFKCIGSTQ 1562
Cdd:COG4618 482 LYGDPRLVVLDEPNSNLDDEGEAALAAAIRALKARGATVVVITHRP---SLLaaVDKLLVLRDGRVQAFGPRD 551
|
|
| PRK10522 |
PRK10522 |
multidrug transporter membrane component/ATP-binding component; Provisional |
542-723 |
2.33e-10 |
|
multidrug transporter membrane component/ATP-binding component; Provisional
Pssm-ID: 236707 [Multi-domain] Cd Length: 547 Bit Score: 65.38 E-value: 2.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGARMslgicpqhnvLFDemSVSNHIRFFSRMKGLRG 620
Cdd:PRK10522 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVtAEQPEDYRK----------LFS--AVFTDFHLFDQLLGPEG 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 621 KAVEQE-VAKYLKMIELEDKAN-----VASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARR----QLWDLLQ 690
Cdd:PRK10522 418 KPANPAlVEKWLERLKMAHKLEledgrISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRRefyqVLLPLLQ 497
|
170 180 190
....*....|....*....|....*....|....*.
gi 442617143 691 QEkvGRTLLLTTH---FMDEAdvlgDRIAIMCDGEL 723
Cdd:PRK10522 498 EM--GKTIFAISHddhYFIHA----DRLLEMRNGQL 527
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
546-728 |
2.86e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 63.08 E-value: 2.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 546 LLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI--RTNIEGARMSLGICPQH-NVLFDEMSVSNHIRFFSRMKGLRGKA 622
Cdd:PRK13644 33 IIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTgdFSKLQGIRKLVGIVFQNpETQFVGRTVEEDLAFGPENLCLPPIE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 623 VEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDP-SARRQLWDLLQQEKVGRTLLLT 701
Cdd:PRK13644 113 IRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPdSGIAVLERIKKLHEKGKTIVYI 192
|
170 180
....*....|....*....|....*..
gi 442617143 702 THFMDEADVlGDRIAIMCDGELKCQGT 728
Cdd:PRK13644 193 THNLEELHD-ADRIIVMDRGKIVLEGE 218
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
530-723 |
2.93e-10 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 65.13 E-value: 2.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 530 VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGA-----RMSLGICPQHNVLFDEMS 604
Cdd:PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAlaqlrREHFGFIFQRYHLLSHLT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 605 VSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQ 684
Cdd:PRK10535 103 AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 442617143 685 LWDLLQQ-EKVGRTLLLTTHFMDEAdVLGDRIAIMCDGEL 723
Cdd:PRK10535 183 VMAILHQlRDRGHTVIIVTHDPQVA-AQAERVIEIRDGEI 221
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
531-723 |
2.98e-10 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 64.81 E-value: 2.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 531 VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTN------------IEGARMSLGICPQHNV 598
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRspldavkkgmayITESRRDNGFFPNFSI 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 599 LfDEMSVSNHIRFfSRMKGLRGKAVEQEVAKY---------LKMIELEDKANvassKLSGGMKRKLSVCCALCGDTKVVL 669
Cdd:PRK09700 359 A-QNMAISRSLKD-GGYKGAMGLFHEVDEQRTaenqrellaLKCHSVNQNIT----ELSGGNQQKVLISKWLCCCPEVII 432
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 670 CDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK09700 433 FDEPTRGIDVGAKAEIYKVMRQlADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
1361-1546 |
3.25e-10 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 64.91 E-value: 3.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG----LSLESNMNSiykmigycpqfdalldDLTG 1436
Cdd:PRK13545 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGsaalIAISSGLNG----------------QLTG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1437 REVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQL 1516
Cdd:PRK13545 103 IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182
|
170 180 190
....*....|....*....|....*....|
gi 442617143 1517 WNMVCRIRDSGKSIVLTSHSMEECEALCTR 1546
Cdd:PRK13545 183 LDKMNEFKEQGKTIFFISHSLSQVKSFCTK 212
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
516-703 |
3.39e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 61.35 E-value: 3.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGS-DIRTNIEGARMSLGICP 594
Cdd:cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGpLDFQRDSIARGLLYLGH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QhNVLFDEMSVSNHIRFFSRMKGlrGKAVEQEVAKylkmIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:cd03231 81 A-PGIKTTLSVLENLRFWHADHS--DEQVEEALAR----VGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153
|
170 180 190
....*....|....*....|....*....|
gi 442617143 675 SGMDPSARRQLWDLLQQE-KVGRTLLLTTH 703
Cdd:cd03231 154 TALDKAGVARFAEAMAGHcARGGMVVLTTH 183
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
516-728 |
3.46e-10 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 64.71 E-value: 3.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGN----KMVVKGLSMNMFEDEITVLLGHNGAGKT-TTISMLtGMFPP----TSGTAIINGSDIRT----- 581
Cdd:COG4172 7 LSVEDLSVAFGQgggtVEAVKGVSFDIAAGETLALVGESGSGKSvTALSIL-RLLPDpaahPSGSILFDGQDLLGlsere 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 582 --NIEGARMSlgicpqhnVLFDE--------MSVSNHIR-FFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASS---KL 647
Cdd:COG4172 86 lrRIRGNRIA--------MIFQEpmtslnplHTIGKQIAeVLRLHRGLSGAAARARALELLERVGIPDPERRLDAyphQL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 648 SGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHfmDEADV--LGDRIAIMCDGEL 723
Cdd:COG4172 158 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKdlQRELGMALLLITH--DLGVVrrFADRVAVMRQGEI 235
|
....*
gi 442617143 724 KCQGT 728
Cdd:COG4172 236 VEQGP 240
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1365-1554 |
3.49e-10 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 64.55 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1365 VSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG--LSLESNMNSIYKMIGYCPQ---FDALL------DD 1433
Cdd:PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGkpIDIRSPRDAIRAGIMLCPEdrkAEGIIpvhsvaDN 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1434 L---TGREVLRIFCMLRGVQES-----RIRQLSedlaksfgfMK--HIDKQTHAYSGGNKRK------LSTAIavigspS 1497
Cdd:PRK11288 352 InisARRHHLRAGCLINNRWEAenadrFIRSLN---------IKtpSREQLIMNLSGGNQQKailgrwLSEDM------K 416
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK11288 417 VILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGR 473
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
496-723 |
3.50e-10 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 64.88 E-value: 3.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 496 HVEQRDPKAFE-TEPEGKHIgLQMRHLKKRFG------NKM-----VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTG 563
Cdd:PRK10261 294 HPAKQEPPIEQdTVVDGEPI-LQVRNLVTRFPlrsgllNRVtrevhAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLR 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 564 MFPPTSGTAIINGSDIRTNIEGARMSLGICPQhnVLFDEMSVSNHIRF---FSRMKGLR------GKAVEQEVAKYLKMI 634
Cdd:PRK10261 373 LVESQGGEIIFNGQRIDTLSPGKLQALRRDIQ--FIFQDPYASLDPRQtvgDSIMEPLRvhgllpGKAAAARVAWLLERV 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 635 ELE-DKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLL--QQEKVGRTLLLTTHFMDEADVL 711
Cdd:PRK10261 451 GLLpEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLldLQRDFGIAYLFISHDMAVVERI 530
|
250
....*....|..
gi 442617143 712 GDRIAIMCDGEL 723
Cdd:PRK10261 531 SHRVAVMYLGQI 542
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
1361-1556 |
3.83e-10 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 60.79 E-value: 3.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDltgrevl 1440
Cdd:cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDT------- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1441 rifcmlrgvqesrirQLSEDLAKSFgfmkhidkqthaySGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMV 1520
Cdd:cd03247 90 ---------------TLRNNLGRRF-------------SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
|
170 180 190
....*....|....*....|....*....|....*.
gi 442617143 1521 CRIRDsGKSIVLTSHSMEECEALcTRLAIMVNGEFK 1556
Cdd:cd03247 142 FEVLK-DKTLIWITHHLTGIEHM-DKILFLENGKII 175
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
1349-1537 |
4.00e-10 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 61.81 E-value: 4.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTK-YYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNS----IYKMIGY 1423
Cdd:PRK10908 4 FEHVSKaYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRevpfLRRQIGM 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1424 CPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDE 1503
Cdd:PRK10908 84 IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE 163
|
170 180 190
....*....|....*....|....*....|....
gi 442617143 1504 PTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSM 1537
Cdd:PRK10908 164 PTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI 197
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
1362-1562 |
4.43e-10 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 64.25 E-value: 4.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG--LSLESNMNSIYKMIGYCPQ---FDALLDDLTG 1436
Cdd:PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGheVVTRSPQDGLANGIVYISEdrkRDGLVLGMSV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1437 RE-----VLRIFCMLRG-VQESRIRQLSEDLAKSFGF-MKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMD 1509
Cdd:PRK10762 348 KEnmsltALRYFSRAGGsLKHADEQQAVSDFIRLFNIkTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1510 PAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIM----VNGEFKCIGSTQ 1562
Cdd:PRK10762 428 VGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMhegrISGEFTREQATQ 484
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
1361-1564 |
4.53e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 62.31 E-value: 4.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL--ESNMNSIYKMIGYC-----PQF--DALL 1431
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTgdFSKLQGIRKLVGIVfqnpeTQFvgRTVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 DDLT-GREVLrifCMlrgvQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDP 1510
Cdd:PRK13644 97 EDLAfGPENL---CL----PPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1511 AARRQLWNMVCRIRDSGKSIVLTSHSMEECEAlCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK13644 170 DSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENV 222
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
516-722 |
4.60e-10 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 64.18 E-value: 4.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFP--PTSGTAIINGSDIR-TNI-EGARMSLG 591
Cdd:PRK13549 6 LEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPhgTYEGEIIFEGEELQaSNIrDTERAGIA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVS------NHIRFFSRMKGLrgkAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDT 665
Cdd:PRK13549 86 IIHQELALVKELSVLeniflgNEITPGGIMDYD---AMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 666 KVVLCDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAhGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
1349-1584 |
4.99e-10 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 62.34 E-value: 4.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFK----MMTGDERISS-----GAAYVQGLSLESNMNSIYK 1419
Cdd:PRK09984 7 VEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRhlsgLITGDKSAGShiellGRTVQREGRLARDIRKSRA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1420 MIGYCPQFDALLDDLTGREVLRI----------FCMLRGVQESRIRQLSedlAKSFGFMKHIDKQ-THAYSGGNKRKLST 1488
Cdd:PRK09984 87 NTGYIFQQFNLVNRLSVLENVLIgalgstpfwrTCFSWFTREQKQRALQ---ALTRVGMVHFAHQrVSTLSGGQQQRVAI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1489 AIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKNK 1567
Cdd:PRK09984 164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDInQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNE 243
|
250
....*....|....*...
gi 442617143 1568 FSKGLILKI-KVRRNLEA 1584
Cdd:PRK09984 244 RFDHLYRSInRVEENAKA 261
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
540-722 |
5.45e-10 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 61.66 E-value: 5.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 540 EDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNiegarmslgicPQHNVLFDEMSVSNHIrfFSRMKGLR 619
Cdd:cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYK-----------PQYIKADYEGTVRDLL--SSITKDFY 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 620 GKA-VEQEVAKYLKMIELEDKaNVasSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EKVGR 696
Cdd:cd03237 91 THPyFKTEIAKPLQIEQILDR-EV--PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRfaENNEK 167
|
170 180
....*....|....*....|....*.
gi 442617143 697 TLLLTTHFMDEADVLGDRIaIMCDGE 722
Cdd:cd03237 168 TAFVVEHDIIMIDYLADRL-IVFEGE 192
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
1306-1564 |
5.57e-10 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 64.01 E-value: 5.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1306 KIRQLISKPPPPPTEGQLDDDVANERErilqmssnelatknLVLDRVT-KYYGQFMAVNQVSLCVQEVECFGLLGVNGAG 1384
Cdd:COG4988 310 KIFALLDAPEPAAPAGTAPLPAAGPPS--------------IELEDVSfSYPGGRPALDGLSLTIPPGERVALVGPSGAG 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1385 KTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGYCPQFDALLDDlTGREVLRIFC-------MLRGVQESRIRQ 1456
Cdd:COG4988 376 KSTLLNLLLGFLPPYSGSILINGVDLSDlDPASWRRQIAWVPQNPYLFAG-TIRENLRLGRpdasdeeLEAALEAAGLDE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1457 LSEDLAKsfGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDsGKSIVLTSHS 1536
Cdd:COG4988 455 FVAALPD--GLDTPLGEGGRGLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAK-GRTVILITHR 531
|
250 260
....*....|....*....|....*...
gi 442617143 1537 MEECeALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:COG4988 532 LALL-AQADRILVLDDGRIVEQGTHEEL 558
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
512-724 |
5.88e-10 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 60.89 E-value: 5.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 512 KHIGLQMRHLKKRFGNKM--VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARM 588
Cdd:cd03369 3 EHGEIEVENLSVRYAPDLppVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTiPLEDLRS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 589 SLGICPQHNVLFDEMSVSNHIRFfsrmkglrGKAVEQEVAKYLKMIEledkanvASSKLSGGMKRKLSVCCALCGDTKVV 668
Cdd:cd03369 83 SLTIIPQDPTLFSGTIRSNLDPF--------DEYSDEEIYGALRVSE-------GGLNLSQGQRQLLCLARALLKRPRVL 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 669 LCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDE-ADVlgDRIAIMCDGELK 724
Cdd:cd03369 148 VLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTiIDY--DKILVMDAGEVK 202
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
527-703 |
6.37e-10 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 63.97 E-value: 6.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 527 NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDEmSV 605
Cdd:TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQyDHHYLHRQVALVGQEPVLFSG-SV 571
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 606 SNHIRF---FSRMKGLRGKAVEQEVAKYLKMIELEDKANV--ASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPS 680
Cdd:TIGR00958 572 RENIAYgltDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVgeKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651
|
170 180
....*....|....*....|...
gi 442617143 681 ARRQLWDLLQQEkvGRTLLLTTH 703
Cdd:TIGR00958 652 CEQLLQESRSRA--SRTVLLIAH 672
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
1361-1539 |
7.41e-10 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 62.07 E-value: 7.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-----NMNSIYKMIGYCPQF-------D 1428
Cdd:PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITStsknkDIKQIRKKVGLVFQFpesqlfeE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1429 ALLDDLT-GREVLrifcmlrGVQESRIRQLSEDLAKSFGFMKHI-DKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:PRK13649 102 TVLKDVAfGPQNF-------GVSQEEAEALAREKLALVGISESLfEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
|
170 180 190
....*....|....*....|....*....|...
gi 442617143 1507 GMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEE 1539
Cdd:PRK13649 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD 207
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
1347-1538 |
7.80e-10 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 63.46 E-value: 7.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVT-KYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGYC 1424
Cdd:TIGR02857 322 LEFSGVSvAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLaDADADSWRDQIAWV 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQFDALLDDlTGREVLRIFCmlRGVQESRIRQLSE-----DLAKSFGFMKH--IDKQTHAYSGGNKRKLSTAIAVIGSPS 1497
Cdd:TIGR02857 402 PQHPFLFAG-TIAENIRLAR--PDASDAEIREALEragldEFVAALPQGLDtpIGEGGAGLSGGQAQRLALARAFLRDAP 478
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRIRdSGKSIVLTSHSME 1538
Cdd:TIGR02857 479 LLLLDEPTAHLDAETEAEVLEALRALA-QGRTVLLVTHRLA 518
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
1349-1571 |
1.08e-09 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 62.90 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG---DERISSGAAYVQGLSLESNMNSIYKMIGY-C 1424
Cdd:TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGmdqYEPTSGRIIYHVALCEKCGYVERPSKVGEpC 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQ-----------FDALLDDLTGREVLRIFCMLR---------GVQESRIRQLSE-------------DLAKSFGF---M 1468
Cdd:TIGR03269 83 PVcggtlepeevdFWNLSDKLRRRIRKRIAIMLQrtfalygddTVLDNVLEALEEigyegkeavgravDLIEMVQLshrI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1469 KHIDKQthaYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCR-IRDSGKSIVLTSHSMEECEALCTRL 1547
Cdd:TIGR03269 163 THIARD---LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEaVKASGISMVLTSHWPEVIEDLSDKA 239
|
250 260
....*....|....*....|....
gi 442617143 1548 AIMVNGEFKCIGSTQHLKNKFSKG 1571
Cdd:TIGR03269 240 IWLENGEIKEEGTPDEVVAVFMEG 263
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
1346-1573 |
1.11e-09 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 62.35 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1346 NLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQglslESNMNSIYKM---IG 1422
Cdd:PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG----EKRMNDVPPAergVG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLD 1502
Cdd:PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1503 EPTTGMDPAARRQLwnmvcRIRDS------GKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL----KNKFSKGL 1572
Cdd:PRK11000 159 EPLSNLDAALRVQM-----RIEISrlhkrlGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELyhypANRFVAGF 233
|
.
gi 442617143 1573 I 1573
Cdd:PRK11000 234 I 234
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1361-1555 |
1.28e-09 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 62.74 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMN--SIYKM-IGYCP---QFDALLDDL 1434
Cdd:COG3845 273 ALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDI-TGLSprERRRLgVAYIPedrLGRGLVPDM 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1435 TGRE--VLRIF---CMLRG--VQESRIRQLSEDLAKSFG-FMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTT 1506
Cdd:COG3845 352 SVAEnlILGRYrrpPFSRGgfLDRKAIRAFAEELIEEFDvRTPGPDTPARSLSGGNQQKVILARELSRDPKLLIAAQPTR 431
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442617143 1507 GMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:COG3845 432 GLDVGAIEFIHQRLLELRDAGAAVLLISEDLDEILALSDRIAVMYEGRI 480
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1337-1538 |
1.30e-09 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 60.75 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1337 MSSNELATKNLvldrvTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGlsleSNMNS 1416
Cdd:PRK10619 1 MSENKLNVIDL-----HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNG----QTINL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1417 IYKMIGYCPQFDALLDDLTGREVLRIF---------CMLRGVQESRIR--QLSEDLAKSFGfMKHIDK------QTHAY- 1478
Cdd:PRK10619 72 VRDKDGQLKVADKNQLRLLRTRLTMVFqhfnlwshmTVLENVMEAPIQvlGLSKQEARERA-VKYLAKvgiderAQGKYp 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1479 ---SGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSME 1538
Cdd:PRK10619 151 vhlSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1362-1556 |
1.40e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 62.53 E-value: 1.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGD-ERISSGAAYVQG--LSLESNMNSIYKMI----------GYCPQFD 1428
Cdd:TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAyPGKFEGNVFINGkpVDIRNPAQAIRAGIamvpedrkrhGIVPILG 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1429 -------ALLDDLTGREVL----RIFCMLRGVQESRIRQLSEDLAKSfgfmkhidkqthAYSGGNKRKLSTAIAVIGSPS 1497
Cdd:TIGR02633 356 vgknitlSVLKSFCFKMRIdaaaELQIIGSAIQRLKVKTASPFLPIG------------RLSGGNQQKAVLAKMLLTNPR 423
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1498 VIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFK 1556
Cdd:TIGR02633 424 VLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1361-1550 |
1.50e-09 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 60.14 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYV----QGLSL----ESNMNSIYK-MIGYCPQFDALL 1431
Cdd:COG4778 26 VLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGNYLPDSGSILVrhdgGWVDLaqasPREILALRRrTIGYVSQFLRVI 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 DDLTGREV----LRifcmLRGVQESRIRQLSEDLAKSFGFMKHIdkqTHAY----SGGNKRKLSTAIAVIGSPSVIYLDE 1503
Cdd:COG4778 106 PRVSALDVvaepLL----ERGVDREEARARARELLARLNLPERL---WDLPpatfSGGEQQRVNIARGFIADPPLLLLDE 178
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 442617143 1504 PTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIM 1550
Cdd:COG4778 179 PTASLDAANRAVVVELIEEAKARGTAIIGIFHDEEVREAVADRVVDV 225
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1347-1564 |
1.71e-09 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 61.66 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYV-------------------QG 1407
Cdd:PRK11432 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIdgedvthrsiqqrdicmvfQS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1408 LSLESNMnSIYKMIGYCpqfdallddltgrevLRifcMLrGVQESRIRQ-LSE-----DLAksfGFMkhiDKQTHAYSGG 1481
Cdd:PRK11432 87 YALFPHM-SLGENVGYG---------------LK---ML-GVPKEERKQrVKEalelvDLA---GFE---DRYVDQISGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1482 NKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRqlwNMVCRIRDSGKSIVLTS----HSMEECEALCTRLAIMVNGEFKC 1557
Cdd:PRK11432 141 QQQRVALARALILKPKVLLFDEPLSNLDANLRR---SMREKIRELQQQFNITSlyvtHDQSEAFAVSDTVIVMNKGKIMQ 217
|
....*..
gi 442617143 1558 IGSTQHL 1564
Cdd:PRK11432 218 IGSPQEL 224
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
1349-1562 |
1.97e-09 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 61.25 E-value: 1.97e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNSIYKMIGYCPQFD 1428
Cdd:PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV-SRLHARDRKVGFVFQHY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1429 ALLDDLT-------GREVL-------------RIFCMLRGVQESRirqlsedLAksfgfmkhiDKQTHAYSGGNKRKLST 1488
Cdd:PRK10851 84 ALFRHMTvfdniafGLTVLprrerpnaaaikaKVTQLLEMVQLAH-------LA---------DRYPAQLSGGQKQRVAL 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1489 AIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGK-SIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQ 1562
Cdd:PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKfTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPD 222
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
516-724 |
2.10e-09 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 59.79 E-value: 2.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNK----MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSL- 590
Cdd:PRK10584 7 VEVHHLKKSVGQGehelSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 591 ----GICPQHNVLFDEMSVSNHIRFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTK 666
Cdd:PRK10584 87 akhvGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPD 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 667 VVLCDEPSSGMDPSARRQLWDLL--QQEKVGRTLLLTTHfmDEadvlgdRIAIMCDGELK 724
Cdd:PRK10584 167 VLFADEPTGNLDRQTGDKIADLLfsLNREHGTTLILVTH--DL------QLAARCDRRLR 218
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
542-711 |
2.61e-09 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 61.74 E-value: 2.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGARmslgicpQH--NVLFDemsvsNHIrfFSRMKGL 618
Cdd:COG4615 359 ELVFIVGGNGSGKSTLAKLLTGLYRPESGEILLDGQPVtADNREAYR-------QLfsAVFSD-----FHL--FDRLLGL 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 619 RGKAVEQEVAKYLKMIELEDKANVA-----SSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARR----QLWDLL 689
Cdd:COG4615 425 DGEADPARARELLERLELDHKVSVEdgrfsTTDLSQGQRKRLALLVALLEDRPILVFDEWAADQDPEFRRvfytELLPEL 504
|
170 180
....*....|....*....|....*
gi 442617143 690 QQEkvGRTLLLTTH---FMDEADVL 711
Cdd:COG4615 505 KAR--GKTVIAISHddrYFDLADRV 527
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
1373-1535 |
3.00e-09 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 61.82 E-value: 3.00e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1373 ECFGLLGVNGAGKTTTFKMMTGdeRISSGAayVQGLSLESN---MNSIYKMIGYCPQFDALLDDLTGREVLrIFCMLRGV 1449
Cdd:PLN03211 95 EILAVLGPSGSGKSTLLNALAG--RIQGNN--FTGTILANNrkpTKQILKRTGFVTQDDILYPHLTVRETL-VFCSLLRL 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1450 QESRIRQLSEDLAKS----FGFMK---HIDKQT--HAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMV 1520
Cdd:PLN03211 170 PKSLTKQEKILVAESviseLGLTKcenTIIGNSfiRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL 249
|
170
....*....|....*
gi 442617143 1521 CRIRDSGKSIVLTSH 1535
Cdd:PLN03211 250 GSLAQKGKTIVTSMH 264
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
534-728 |
3.14e-09 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 59.80 E-value: 3.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 534 LSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDEMSVSNHI--- 609
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESwSSKAFARKVAYLPQQLPAAEGMTVRELVaig 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 610 RF-FSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDL 688
Cdd:PRK10575 110 RYpWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442617143 689 LQQ--EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK10575 190 VHRlsQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGT 231
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1377-1535 |
3.70e-09 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 62.05 E-value: 3.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1377 LLGVNGAGKTT---------TFKMMTGDERISSGAAyvqglsLESnmnSIYKMIGYCPQFDALLDDLTGREVLRIFCMLR 1447
Cdd:TIGR00956 794 LMGASGAGKTTllnvlaervTTGVITGGDRLVNGRP------LDS---SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLR 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1448 GVQESRIRQLSEDLAKsfgFMKHIDKQTHAY-------SGGN---KRKLSTAIAVIGSP-SVIYLDEPTTGMDPaarRQL 1516
Cdd:TIGR00956 865 QPKSVSKSEKMEYVEE---VIKLLEMESYADavvgvpgEGLNveqRKRLTIGVELVAKPkLLLFLDEPTSGLDS---QTA 938
|
170 180
....*....|....*....|..
gi 442617143 1517 WNMVCRIR---DSGKSIVLTSH 1535
Cdd:TIGR00956 939 WSICKLMRklaDHGQAILCTIH 960
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
1362-1554 |
4.06e-09 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 59.72 E-value: 4.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGYCPQF-DALLDDLTGREV 1439
Cdd:PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAeNVWNLRRKIGMVFQNpDNQFVGATVEDD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1440 LRIFCMLRGV-QESRIRQLSEDLAkSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWN 1518
Cdd:PRK13642 103 VAFGMENQGIpREEMIKRVDEALL-AVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
|
170 180 190
....*....|....*....|....*....|....*..
gi 442617143 1519 MVCRIRDSGKSIVLT-SHSMEECeALCTRLAIMVNGE 1554
Cdd:PRK13642 182 VIHEIKEKYQLTVLSiTHDLDEA-ASSDRILVMKAGE 217
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
1347-1553 |
4.74e-09 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 58.94 E-value: 4.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG-----DERISSGAAYVQGLSLESnmnsiykmi 1421
Cdd:PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGfvpyqHGSITLDGKPVEGPGAER--------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GYCPQFDALLDDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:PRK11248 73 GVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1502 DEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:PRK11248 153 DEPFGALDAFTREQMQTLLLKLwQETGKQVLLITHDIEEAVFMATELVLLSPG 205
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
543-728 |
5.31e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 61.53 E-value: 5.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 543 ITVLLGHNGAGKTTTISMLTGMFPPTSGTAIIngsdirtniegARMSLGICPQHNVLFDEmSVSNHIRFFSRMKGLR-GK 621
Cdd:PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVV-----------IRGSVAYVPQVSWIFNA-TVRENILFGSDFESERyWR 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 622 AVEQEVAKY-LKMIELEDKANVASS--KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWD-LLQQEKVGRT 697
Cdd:PLN03232 713 AIDVTALQHdLDLLPGRDLTEIGERgvNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDsCMKDELKGKT 792
|
170 180 190
....*....|....*....|....*....|....
gi 442617143 698 LLLTT---HFMDeadvLGDRIAIMCDGELKCQGT 728
Cdd:PLN03232 793 RVLVTnqlHFLP----LMDRIILVSEGMIKEEGT 822
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1337-1564 |
8.74e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 58.25 E-value: 8.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1337 MSSNELATKNLVLdrvtkYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMT--GD---ERISSGAAYVQGLSLE 1411
Cdd:PRK14239 1 MTEPILQVSDLSV-----YYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINrmNDlnpEVTITGSIVYNGHNIY 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1412 S---NMNSIYKMIGYCPQ------FDALLDDLTGrevLRIfcmlRGVQESRIrqLSEDLAKSF---GFMKHIDKQTH--- 1476
Cdd:PRK14239 76 SprtDTVDLRKEIGMVFQqpnpfpMSIYENVVYG---LRL----KGIKDKQV--LDEAVEKSLkgaSIWDEVKDRLHdsa 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1477 -AYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSgKSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:PRK14239 147 lGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDD-YTMLLVTRSMQQASRISDRTGFFLDGDL 225
|
....*....
gi 442617143 1556 KCIGSTQHL 1564
Cdd:PRK14239 226 IEYNDTKQM 234
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
516-689 |
8.96e-09 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 60.18 E-value: 8.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTaiingsdirtnIEGAR-MSLGICP 594
Cdd:PRK10636 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGE-----------IGLAKgIKLGYFA 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QHNVLF---DEMSVSNHIRffsrmkgLRGKAVEQEVAKYLKMIELE-DKANVASSKLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:PRK10636 382 QHQLEFlraDESPLQHLAR-------LAPQELEQKLRDYLGGFGFQgDKVTEETRRFSGGEKARLVLALIVWQRPNLLLL 454
|
170
....*....|....*....
gi 442617143 671 DEPSSGMDPSARRQLWDLL 689
Cdd:PRK10636 455 DEPTNHLDLDMRQALTEAL 473
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
526-703 |
1.03e-08 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 57.12 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 526 GNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGICPQHNVLFDEMSV 605
Cdd:PRK13538 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 606 SNHIRFFSRmkgLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLsvccALC----GDTKVVLCDEPSSGMDPSA 681
Cdd:PRK13538 92 LENLRFYQR---LHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRV----ALArlwlTRAPLWILDEPFTAIDKQG 164
|
170 180
....*....|....*....|....
gi 442617143 682 RRQLWDLLQQ--EKvGRTLLLTTH 703
Cdd:PRK13538 165 VARLEALLAQhaEQ-GGMVILTTH 187
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1365-1555 |
1.13e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 59.68 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1365 VSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG--LSLESNMNSIYKMIGYCPQ--------FDALLD-D 1433
Cdd:PRK15439 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGkeINALSTAQRLARGLVYLPEdrqssglyLDAPLAwN 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1434 LTGREVLRIFCMLRGVQESRI-----RQLSEDLAksfgfmkHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGM 1508
Cdd:PRK15439 362 VCALTHNRRGFWIKPARENAVleryrRALNIKFN-------HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 442617143 1509 DPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:PRK15439 435 DVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
516-722 |
1.21e-08 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 59.63 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDirTNIEGARMS----LG 591
Cdd:PRK10762 5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKE--VTFNGPKSSqeagIG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFDEMSVSNHI----RFFSRMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKV 667
Cdd:PRK10762 83 IIHQELNLIPQLTIAENIflgrEFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 668 VLCDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:PRK10762 163 IIMDEPTDALTDTETESLFRVIRELKSqGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
1337-1574 |
1.33e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 57.75 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1337 MSSNELATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL------ 1410
Cdd:PRK14246 1 MEAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLyfgkdi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1411 -ESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESR-IRQLSEDLAKSFGFMKHIDKQTHA----YSGGNKR 1484
Cdd:PRK14246 81 fQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKReIKKIVEECLRKVGLWKEVYDRLNSpasqLSGGQQQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1485 KLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSgKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
250
....*....|....
gi 442617143 1565 ----KNKFSKGLIL 1574
Cdd:PRK14246 240 ftspKNELTEKYVI 253
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
542-723 |
1.39e-08 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 59.54 E-value: 1.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGS--DIRTNIEGARMSLGICPQhnvlfDE--------MSVSNHI-- 609
Cdd:PRK11288 280 EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKpiDIRSPRDAIRAGIMLCPE-----DRkaegiipvHSVADNIni 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 610 ---RFFSRMKGLRGKAVEQEVAKylKMIE-LEDKANVASSK---LSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSAR 682
Cdd:PRK11288 355 sarRHHLRAGCLINNRWEAENAD--RFIRsLNIKTPSREQLimnLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAK 432
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 442617143 683 RQLWDLLQQ-EKVGRTLLLTTHfmDEADVLG--DRIAIMCDGEL 723
Cdd:PRK11288 433 HEIYNVIYElAAQGVAVLFVSS--DLPEVLGvaDRIVVMREGRI 474
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
512-723 |
1.62e-08 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 57.77 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 512 KHIGLQMRH--LKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIrTNIEGARM- 588
Cdd:PRK10419 7 SGLSHHYAHggLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPL-AKLNRAQRk 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 589 ------------SLG-ICPQHNVlfdEMSVSNHIRFFSRMKGLRGKAVEQEVakyLKMIELEDK-ANVASSKLSGGMKRK 654
Cdd:PRK10419 86 afrrdiqmvfqdSISaVNPRKTV---REIIREPLRHLLSLDKAERLARASEM---LRAVDLDDSvLDKRPPQLSGGQLQR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 655 LSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDGEL 723
Cdd:PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKklQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
|
| bacteriocin_ABC |
TIGR01193 |
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The ... |
1327-1538 |
1.72e-08 |
|
ABC-type bacteriocin transporter; This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]
Pssm-ID: 130261 [Multi-domain] Cd Length: 708 Bit Score: 59.37 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1327 VANERERILQMSSNELATKNLVLDRVTKYYG-QFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYV 1405
Cdd:TIGR01193 454 VDSEFINKKKRTELNNLNGDIVINDVSYSYGyGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1406 QGLSLES-NMNSIYKMIGYCPQ----FD-ALLDDLT--GREVLRIFCMLRGVQESRIRQLSEDLakSFGFMKHIDKQTHA 1477
Cdd:TIGR01193 534 NGFSLKDiDRHTLRQFINYLPQepyiFSgSILENLLlgAKENVSQDEIWAACEIAEIKDDIENM--PLGYQTELSEEGSS 611
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 1478 YSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDsgKSIVLTSHSME 1538
Cdd:TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLS 670
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
1362-1539 |
2.18e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 57.53 E-value: 2.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNS-----IYKMIGYCPQF-DALLDDLT 1435
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNknlkkLRKKVSLVFQFpEAQLFENT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1436 GREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKH-IDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARR 1514
Cdd:PRK13641 103 VLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDlISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRK 182
|
170 180
....*....|....*....|....*
gi 442617143 1515 QLWNMVCRIRDSGKSIVLTSHSMEE 1539
Cdd:PRK13641 183 EMMQLFKDYQKAGHTVILVTHNMDD 207
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
1340-1562 |
2.28e-08 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 57.16 E-value: 2.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1340 NELATKNLvldRVtkYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTT---TFKMM---------TGDERISSGAAYvqg 1407
Cdd:PRK14267 3 FAIETVNL---RV--YYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTllrTFNRLlelneearvEGEVRLFGRNIY--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1408 lSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQESR--IRQLSEDLAKSFGFMKHIDKQTHAY----SGG 1481
Cdd:PRK14267 75 -SPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKkeLDERVEWALKKAALWDEVKDRLNDYpsnlSGG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1482 NKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSgKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGST 1561
Cdd:PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE-YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232
|
.
gi 442617143 1562 Q 1562
Cdd:PRK14267 233 R 233
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
504-723 |
2.70e-08 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 58.50 E-value: 2.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 504 AFETEPEGKHIG---LQMRHLK-KRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI 579
Cdd:COG3845 243 LLRVEKAPAEPGevvLEVENLSvRDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRPPASGSIRLDGEDI 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 580 -RTNIeGARMSLGIC-----PQHNVLFDEMSVSNHI---RF----FSRMKGLRGKAVEqEVAKylKMIELED----KANV 642
Cdd:COG3845 323 tGLSP-RERRRLGVAyipedRLGRGLVPDMSVAENLilgRYrrppFSRGGFLDRKAIR-AFAE--ELIEEFDvrtpGPDT 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 643 ASSKLSGG--MK----RKLSvccalcGDTKVVLCDEPSSGMDPSARRQLWD-LLQQEKVGRTLLLTTHFMDEADVLGDRI 715
Cdd:COG3845 399 PARSLSGGnqQKvilaRELS------RDPKLLIAAQPTRGLDVGAIEFIHQrLLELRDAGAAVLLISEDLDEILALSDRI 472
|
....*...
gi 442617143 716 AIMCDGEL 723
Cdd:COG3845 473 AVMYEGRI 480
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1361-1541 |
2.74e-08 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 57.12 E-value: 2.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG--------DERISsgaayVQGLSL-ESNMNSIYKMIGYC---P--Q 1426
Cdd:PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlllpddnpNSKIT-----VDGITLtAKTVWDIREKVGIVfqnPdnQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 F--DALLDDLT-GREVlrifcmlRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTA-IAVIGsPSVIYLD 1502
Cdd:PRK13640 97 FvgATVGDDVAfGLEN-------RAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAgILAVE-PKIIILD 168
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 442617143 1503 EPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECE 1541
Cdd:PRK13640 169 ESTSMLDPAGKEQILKLIRKLkKKNNLTVISITHDIDEAN 208
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
527-722 |
4.22e-08 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 55.17 E-value: 4.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 527 NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSdirtniegarmsLGICPQ----HNvlfde 602
Cdd:cd03250 17 TSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS------------IAYVSQepwiQN----- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 603 MSVSNHIRFFSRM------KGLRGKAVEQEvakyLKMIELEDKANVAS--SKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:cd03250 80 GTIRENILFGKPFdeeryeKVIKACALEPD----LEILPDGDLTEIGEkgINLSGGQKQRISLARAVYSDADIYLLDDPL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 675 SGMDPSARRQLWD--LLQQEKVGRTLLLTTH---FMDEAdvlgDRIAIMCDGE 722
Cdd:cd03250 156 SAVDAHVGRHIFEncILGLLLNNKTRILVTHqlqLLPHA----DQIVVLDNGR 204
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1346-1537 |
4.31e-08 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 56.28 E-value: 4.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1346 NLV-LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGlSLEsnmnsiykmIGYC 1424
Cdd:PRK09544 3 SLVsLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-KLR---------IGYV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQ---FDALLDDLTGRevlriFCMLR-GVQESRIRQLSEDLAKSfgfmKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIY 1500
Cdd:PRK09544 73 PQklyLDTTLPLTVNR-----FLRLRpGTKKEDILPALKRVQAG----HLIDAPMQKLSGGETQRVLLARALLNRPQLLV 143
|
170 180 190
....*....|....*....|....*....|....*...
gi 442617143 1501 LDEPTTGMDPAARRQLWNMVCRIRDS-GKSIVLTSHSM 1537
Cdd:PRK09544 144 LDEPTQGVDVNGQVALYDLIDQLRRElDCAVLMVSHDL 181
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
546-728 |
4.54e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 58.60 E-value: 4.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 546 LLGHNGAGKTTTISMLTGMFPPTSGTAIIngsdirtniegARMSLGICPQHNVLFDEmSVSNHIRFFSRMKGLR-GKAVE 624
Cdd:PLN03130 648 IVGSTGEGKTSLISAMLGELPPRSDASVV-----------IRGTVAYVPQVSWIFNA-TVRDNILFGSPFDPERyERAID 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 625 -QEVAKYLKMIELEDKANVASS--KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWD-LLQQEKVGRTLLL 700
Cdd:PLN03130 716 vTALQHDLDLLPGGDLTEIGERgvNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDkCIKDELRGKTRVL 795
|
170 180 190
....*....|....*....|....*....|.
gi 442617143 701 TT---HFMDEAdvlgDRIAIMCDGELKCQGT 728
Cdd:PLN03130 796 VTnqlHFLSQV----DRIILVHEGMIKEEGT 822
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
505-724 |
4.54e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 57.91 E-value: 4.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 505 FETEP-EGKHIGLQMRHL---------KKRfgnkmvVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPT-SGTAI 573
Cdd:TIGR02633 246 YPHEPhEIGDVILEARNLtcwdvinphRKR------VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKfEGNVF 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 574 INGS--DIRTNIEGARMSLGICPQ----HNVLFDeMSVSNHIRF-----FSRMKGLRGKAVEQEVAKYLKMIELEDKA-N 641
Cdd:TIGR02633 320 INGKpvDIRNPAQAIRAGIAMVPEdrkrHGIVPI-LGVGKNITLsvlksFCFKMRIDAAAELQIIGSAIQRLKVKTASpF 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 642 VASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCD 720
Cdd:TIGR02633 399 LPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQlAQEGVAIIVVSSELAEVLGLSDRVLVIGE 478
|
....
gi 442617143 721 GELK 724
Cdd:TIGR02633 479 GKLK 482
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
1346-1564 |
4.58e-08 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 55.53 E-value: 4.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1346 NLVLDRVTKYYGQFMAvnQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLesNMNSIYK----MI 1421
Cdd:COG3840 1 MLRLDDLTYRYGDFPL--RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPPDSGRILWNGQDL--TALPPAErpvsML 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GycpQFDALLDDLTGRE----VLRIFCMLRGVQESRIrqlsEDLAKSFGFMKHIDKQTHAYSGGNKRKlsTAIA---VIG 1494
Cdd:COG3840 77 F---QENNLFPHLTVAQniglGLRPGLKLTAEQRAQV----EQALERVGLAGLLDRLPGQLSGGQRQR--VALArclVRK 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 1495 SPsVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:COG3840 148 RP-ILLLDEPFSALDPALRQEMLDLVDELcRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAAL 217
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
509-718 |
5.00e-08 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 56.64 E-value: 5.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 509 PEGKHIGLQMRHLKKRFGNK-------------MVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIIN 575
Cdd:PRK15079 2 TEGKKVLLEVADLKVHFDIKdgkqwfwqppktlKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 576 GSD-----------IRTNIE----------GARMSLG--ICPQHNVLFDEMSvsnhirffsrmkglrGKAVEQEV-AKYL 631
Cdd:PRK15079 82 GKDllgmkddewraVRSDIQmifqdplaslNPRMTIGeiIAEPLRTYHPKLS---------------RQEVKDRVkAMML 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 632 KMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHfmDEAD 709
Cdd:PRK15079 147 KVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQqlQREMGLSLIFIAH--DLAV 224
|
250
....*....|.
gi 442617143 710 V--LGDRIAIM 718
Cdd:PRK15079 225 VkhISDRVLVM 235
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
1337-1553 |
5.72e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 57.37 E-value: 5.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1337 MSSNELATKNLVLDR-VTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNM 1414
Cdd:PRK15439 1 MQTSDTTAPPLLCARsISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCaRLTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1415 NSIYKM-IGYCPQFDALLDDLTGREVLrIFCMLRG-VQESRIRQL------SEDLAKSFGFMKHIDKQTHAYSGGNKRkl 1486
Cdd:PRK15439 81 AKAHQLgIYLVPQEPLLFPNLSVKENI-LFGLPKRqASMQKMKQLlaalgcQLDLDSSAGSLEVADRQIVEILRGLMR-- 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1487 staiavigSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:PRK15439 158 --------DSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDG 216
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
1347-1600 |
6.51e-08 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 57.14 E-value: 6.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG-------DERISSGAAYVQGLSL----ESNMN 1415
Cdd:TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGvyphgtwDGEIYWSGSPLKASNIrdteRAGIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1416 SIYKMIGYCPQFDALLDDLTGREV------LRIFCMLRGVQEsRIRQLSEDLAksfgfmkHIDKQTHAYSGGNKRKLSTA 1489
Cdd:TIGR02633 82 IIHQELTLVPELSVAENIFLGNEItlpggrMAYNAMYLRAKN-LLRELQLDAD-------NVTRPVGDYGGGQQQLVEIA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1490 IAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGefkcigstQHLKNKFS 1569
Cdd:TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG--------QHVATKDM 225
|
250 260 270
....*....|....*....|....*....|....*
gi 442617143 1570 KGL----ILKIKVRRNLEALrqarlsggYARNPDE 1600
Cdd:TIGR02633 226 STMseddIITMMVGREITSL--------YPHEPHE 252
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
543-703 |
7.89e-08 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 55.66 E-value: 7.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 543 ITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRtniEGARMSL-GICPQHN-------VLFDE---MSVSNHIRF 611
Cdd:PRK15056 35 IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR---QALQKNLvAYVPQSEevdwsfpVLVEDvvmMGRYGHMGW 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 612 FSRMKGLRGKAVEQEVAKyLKMIELEDKAnvaSSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ 691
Cdd:PRK15056 112 LRRAKKRDRQIVTAALAR-VDMVEFRHRQ---IGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRE 187
|
170
....*....|...
gi 442617143 692 EK-VGRTLLLTTH 703
Cdd:PRK15056 188 LRdEGKTMLVSTH 200
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
1349-1553 |
8.29e-08 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 54.42 E-value: 8.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQfmAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLeSNMNSIYKMIGYCPQFD 1428
Cdd:cd03298 3 LDKIRFSYGE--QPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV-TAAPPADRPVSMLFQEN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1429 ALLDDLT-------GREV-LRIFCMLRGVQESRIRQLSEDlaksfGFMKHIDKQthaYSGGNKRKLSTAIAVIGSPSVIY 1500
Cdd:cd03298 80 NLFAHLTveqnvglGLSPgLKLTAEDRQAIEVALARVGLA-----GLEKRLPGE---LSGGERQRVALARVLVRDKPVLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1501 LDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:cd03298 152 LDEPFAALDPALRAEMLDLVLDLhAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
542-711 |
9.84e-08 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 57.43 E-value: 9.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISML-----TGMFppTSGTAIINGSDIRTNIEgarMSLGICPQHNVLFDEMSVSNHIRFFSRMK 616
Cdd:TIGR00956 790 TLTALMGASGAGKTTLLNVLaervtTGVI--TGGDRLVNGRPLDSSFQ---RSIGYVQQQDLHLPTSTVRESLRFSAYLR 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 617 glRGKAVEQE-----VAKYLKMIELEDKAN----VASSKLSGGMKRKLSVCCALCGDTK-VVLCDEPSSGMDPSARRQLW 686
Cdd:TIGR00956 865 --QPKSVSKSekmeyVEEVIKLLEMESYADavvgVPGEGLNVEQRKRLTIGVELVAKPKlLLFLDEPTSGLDSQTAWSIC 942
|
170 180 190
....*....|....*....|....*....|.
gi 442617143 687 DLLQQ-EKVGRTLLLTTH-----FMDEADVL 711
Cdd:TIGR00956 943 KLMRKlADHGQAILCTIHqpsaiLFEEFDRL 973
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
1377-1535 |
1.06e-07 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 57.16 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1377 LLGVNGAGKTTTFKMMTGdeRISSGaaYVQG----LSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRgvqes 1452
Cdd:PLN03140 911 LMGVSGAGKTTLMDVLAG--RKTGG--YIEGdiriSGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR----- 981
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1453 rirqLSEDLAKSFGfMKHIDKQTH------------------AYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARR 1514
Cdd:PLN03140 982 ----LPKEVSKEEK-MMFVDEVMElveldnlkdaivglpgvtGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1056
|
170 180
....*....|....*....|.
gi 442617143 1515 QLWNMVCRIRDSGKSIVLTSH 1535
Cdd:PLN03140 1057 IVMRTVRNTVDTGRTVVCTIH 1077
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
518-680 |
1.26e-07 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 53.81 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 518 MRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPT---SGTAIINGSDIRTNIEGARMSLGICP 594
Cdd:cd03233 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNvsvEGDIHYNGIPYKEFAEKYPGEIIYVS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 595 QHNVLFDEMSVSNHIRFFSRMKGlrgkaveqevakylkmieledkaNVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPS 674
Cdd:cd03233 90 EEDVHFPTLTVRETLDFALRCKG-----------------------NEFVRGISGGERKRVSIAEALVSRASVLCWDNST 146
|
....*.
gi 442617143 675 SGMDPS 680
Cdd:cd03233 147 RGLDSS 152
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
1379-1547 |
1.41e-07 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 54.08 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1379 GVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYkmIGYCPQFDALLDDLTGREVLRIFCMLRGvqeSRIRQLS 1458
Cdd:PRK13543 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRF--MAYLGHLPGLKADLSTLENLHFLCGLHG---RRAKQMP 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1459 EDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSME 1538
Cdd:PRK13543 119 GSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY 198
|
....*....
gi 442617143 1539 ECEALCTRL 1547
Cdd:PRK13543 199 AAPPVRTRM 207
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
509-689 |
2.57e-07 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 55.33 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 509 PEGKHIG---LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIIngsdirtnieG 585
Cdd:TIGR03719 313 PPGPRLGdkvIEAENLTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI----------G 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 586 ARMSLGICPQhnvlfdemsvsnhirffSRmKGLRG-KAVEQEVAKYLKMIELED-----KANVAS------------SKL 647
Cdd:TIGR03719 383 ETVKLAYVDQ-----------------SR-DALDPnKTVWEEISGGLDIIKLGKreipsRAYVGRfnfkgsdqqkkvGQL 444
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442617143 648 SGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLL 689
Cdd:TIGR03719 445 SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL 486
|
|
| PRK13543 |
PRK13543 |
heme ABC exporter ATP-binding protein CcmA; |
542-703 |
3.30e-07 |
|
heme ABC exporter ATP-binding protein CcmA;
Pssm-ID: 184129 [Multi-domain] Cd Length: 214 Bit Score: 52.93 E-value: 3.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMS-LGICPQhnvLFDEMSVSNHIRFfsrMKGLRG 620
Cdd:PRK13543 38 EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAyLGHLPG---LKADLSTLENLHF---LCGLHG 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 621 KAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQE-KVGRTLL 699
Cdd:PRK13543 112 RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHlRGGGAAL 191
|
....
gi 442617143 700 LTTH 703
Cdd:PRK13543 192 VTTH 195
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1362-1556 |
3.63e-07 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 54.94 E-value: 3.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDER-ISSGAAYVQG--LSLESNMNSIYKMIGYCPQfD---------- 1428
Cdd:PRK13549 278 VDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGkpVKIRNPQQAIAQGIAMVPE-Drkrdgivpvm 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1429 --------ALLDDLTGREVLR----IFCMLRGVQESRIRQLSEDLAKSfgfmkhidkqthAYSGGNKRKLSTAIAVIGSP 1496
Cdd:PRK13549 357 gvgknitlAALDRFTGGSRIDdaaeLKTILESIQRLKVKTASPELAIA------------RLSGGNQQKAVLAKCLLLNP 424
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1497 SVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFK 1556
Cdd:PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
543-727 |
3.81e-07 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 54.11 E-value: 3.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 543 ITVLLGHNGAGKTTTISMLTGMFPPTSGTAIING---SDIRTNI----EGARMslGICPQHNVLFDEMSVSNHIRFfsrm 615
Cdd:PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGrvlFDAEKGIclppEKRRI--GYVFQDARLFPHYKVRGNLRY---- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 616 kGLRGKAVEQeVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ--EK 693
Cdd:PRK11144 100 -GMAKSMVAQ-FDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERlaRE 177
|
170 180 190
....*....|....*....|....*....|....
gi 442617143 694 VGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQG 727
Cdd:PRK11144 178 INIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
1342-1554 |
4.06e-07 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 54.09 E-value: 4.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1342 LATKNLVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTT-------FKMMTGD---ERISSGAAYVQGLSLE 1411
Cdd:PRK13631 22 LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLvthfnglIKSKYGTiqvGDIYIGDKKNNHELIT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1412 S-------NMNSIYKMIGYCPQFD--ALLDDLTGREVLRIFCMLrGVQESRIRQLSEDLAKSFGF-MKHIDKQTHAYSGG 1481
Cdd:PRK13631 102 NpyskkikNFKELRRRVSMVFQFPeyQLFKDTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLdDSYLERSPFGLSGG 180
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1482 NKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK13631 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
516-721 |
4.77e-07 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 54.33 E-value: 4.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGN----KMVVKGLSMNMFEDEITVLLGHNGAGKT-TTISMLTGM-FPP---TSGTAIINGSDI-----RT 581
Cdd:PRK15134 6 LAIENLSVAFRQqqtvRTVVNDVSLQIEAGETLALVGESGSGKSvTALSILRLLpSPPvvyPSGDIRFHGESLlhaseQT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 582 --NIEGARMSL-------GICPQHNV---LFDEMSVsnHirffsrmKGLRGKAVEQEVAKYLKMIELEDKANVASS---K 646
Cdd:PRK15134 86 lrGVRGNKIAMifqepmvSLNPLHTLekqLYEVLSL--H-------RGMRREAARGEILNCLDRVGIRQAAKRLTDyphQ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 647 LSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHFMDEADVLGDRIAIMCDG 721
Cdd:PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRelQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
1349-1566 |
6.69e-07 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 52.32 E-value: 6.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1349 LDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQG----LSLESNMNSIYKM---I 1421
Cdd:PRK11124 5 LNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGnhfdFSKTPSDKAIRELrrnV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1422 GYCPQFDALLDDLTGREVL-RIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIY 1500
Cdd:PRK11124 85 GMVFQQYNLWPHLTVQQNLiEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1501 LDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKN 1566
Cdd:PRK11124 165 FDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
505-678 |
1.03e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 53.36 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 505 FETEPEGKHIGLQMRHLKKRFGNKMVVKGLSMnMFE--DEITVLlGHNGAGKTTTISMLTGMFPPTSGTaiINGSdirtn 582
Cdd:PRK15064 309 FEQDKKLHRNALEVENLTKGFDNGPLFKNLNL-LLEagERLAII-GENGVGKTTLLRTLVGELEPDSGT--VKWS----- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 583 iEGArmSLGICPQ-HNVLFDE-MSVsnhirfFSRMKGLR-GKAVEQEVAKYL-KMIELEDKANVASSKLSGGMKRKLSVC 658
Cdd:PRK15064 380 -ENA--NIGYYAQdHAYDFENdLTL------FDWMSQWRqEGDDEQAVRGTLgRLLFSQDDIKKSVKVLSGGEKGRMLFG 450
|
170 180
....*....|....*....|
gi 442617143 659 CALCGDTKVVLCDEPSSGMD 678
Cdd:PRK15064 451 KLMMQKPNVLVMDEPTNHMD 470
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
1355-1535 |
1.06e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 51.10 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1355 YYGQFMaVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDL 1434
Cdd:PRK13540 11 YHDQPL-LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1435 TGREVlrifCMLRGVQESRIRQLSEdLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARR 1514
Cdd:PRK13540 90 TLREN----CLYDIHFSPGAVGITE-LCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLL 164
|
170 180
....*....|....*....|.
gi 442617143 1515 QLWNMVCRIRDSGKSIVLTSH 1535
Cdd:PRK13540 165 TIITKIQEHRAKGGAVLLTSH 185
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
1358-1538 |
1.13e-06 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 52.40 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1358 QFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG--------------DERISSGAAYVQGLSLE-----------S 1412
Cdd:PRK13651 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAlllpdtgtiewifkDEKNKKKTKEKEKVLEKlviqktrfkkiK 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1413 NMNSIYKMIGYCPQF-------DALLDDLtgrevlrIF-CMLRGVQESRIRQLSEDLAKSFGF-MKHIDKQTHAYSGGNK 1483
Cdd:PRK13651 99 KIKEIRRRVGVVFQFaeyqlfeQTIEKDI-------IFgPVSMGVSKEEAKKRAAKYIELVGLdESYLQRSPFELSGGQK 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1484 RKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSME 1538
Cdd:PRK13651 172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD 226
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1366-1564 |
1.63e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 52.71 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1366 SLCVQEVECFGLLGVNGAGKTTTFKMMTGD------ERISSGAAYVQgLSLESnmnsIYKMIGYCPQ---FDALLDDL-- 1434
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGElpllsgERQSQFSHITR-LSFEQ----LQKLVSDEWQrnnTDMLSPGEdd 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1435 TGREVLRIfcmlrgVQ-ESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAAR 1513
Cdd:PRK10938 98 TGRTTAEI------IQdEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 442617143 1514 RQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK10938 172 QQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
1347-1554 |
1.91e-06 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 51.22 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGycpq 1426
Cdd:PRK11247 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ---- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1427 fDALLddLTGREVL-RIFCMLRGVQESRIRQLSEdlakSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPT 1505
Cdd:PRK11247 89 -DARL--LPWKKVIdNVGLGLKGQWRDAALQALA----AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 1506 TGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK11247 162 GALDALTRIEMQDLIESLwQQHGFTVLLVTHDVSEAVAMADRVLLIEEGK 211
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
509-739 |
2.74e-06 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 52.67 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 509 PEGKHIGLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDI-RTNIEGAR 587
Cdd:PLN03232 1230 PSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVaKFGLTDLR 1309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 588 MSLGICPQHNVLFdemsvSNHIRF----FSR------MKGLRGKAVEQEVAKylKMIELEDKANVASSKLSGGMKRKLSV 657
Cdd:PLN03232 1310 RVLSIIPQSPVLF-----SGTVRFnidpFSEhndadlWEALERAHIKDVIDR--NPFGLDAEVSEGGENFSVGQRQLLSL 1382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 658 CCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMDEAdVLGDRIAIMCDG---------ELKCQGT 728
Cdd:PLN03232 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI-IDCDKILVLSSGqvleydspqELLSRDT 1461
|
250
....*....|.
gi 442617143 729 SFFLKKQYGSG 739
Cdd:PLN03232 1462 SAFFRMVHSTG 1472
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
1455-1578 |
2.80e-06 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 50.35 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1455 RQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARR---QLWNMVCRIRDSgkSIV 1531
Cdd:PRK10771 107 REKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQemlTLVSQVCQERQL--TLL 184
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 442617143 1532 LTSHSMEECEALCTRLAIMVNGEFKCIGSTQHLKN-KFSKGLILKIKV 1578
Cdd:PRK10771 185 MVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSgKASASALLGIKS 232
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
544-742 |
2.97e-06 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 52.15 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 544 TVLLGHNGAGKTTTISMLTGmFPPTSGTAIINGSDIRT-NIEGARMSL---GICPQ--HNVLFDEMSVSNHirffsrmkg 617
Cdd:PRK11174 379 IALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRElDPESWRKHLswvGQNPQlpHGTLRDNVLLGNP--------- 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 618 lrgKAVEQEVAKYLkmieleDKANVA-----------------SSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPS 680
Cdd:PRK11174 449 ---DASDEQLQQAL------ENAWVSeflpllpqgldtpigdqAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 681 ARRQLWDLLQQEKVGRTLLLTTHFMDE-ADVlgDRIAIMCDGELKCQGTSFFLKKQYGSGYRL 742
Cdd:PRK11174 520 SEQLVMQALNAASRRQTTLMVTHQLEDlAQW--DQIWVMQDGQIVQQGDYAELSQAGGLFATL 580
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
521-682 |
2.97e-06 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 52.09 E-value: 2.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 521 LKKRFGN-KMVVKGLSMNmfEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIingsdirtniEGARMSLGicPQHNVL 599
Cdd:COG1245 347 LTKSYGGfSLEVEGGEIR--EGEVLGIVGPNGIGKTTFAKILAGVLKPDEGEVD----------EDLKISYK--PQYISP 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 600 FDEMSVSNHIRFFSRmKGLRGKAVEQEVAKYLKMIELEDKaNVasSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDP 679
Cdd:COG1245 413 DYDGTVEEFLRSANT-DDFGSSYYKTEIIKPLGLEKLLDK-NV--KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV 488
|
...
gi 442617143 680 SAR 682
Cdd:COG1245 489 EQR 491
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
1347-1539 |
3.00e-06 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 50.10 E-value: 3.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVEcFGLL-GVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIY-KMIGYC 1424
Cdd:PRK10247 8 LQLQNVGYLAGDAKILNNISFSLRAGE-FKLItGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYrQQVSYC 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1425 PQFDALLDDlTGREVLRIFCMLRGvQESRIRQLSEDLAKsFGFMKHI-DKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDE 1503
Cdd:PRK10247 87 AQTPTLFGD-TVYDNLIFPWQIRN-QQPDPAIFLDDLER-FALPDTIlTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163
|
170 180 190
....*....|....*....|....*....|....*..
gi 442617143 1504 PTTGMDPAARRQLWNMVCR-IRDSGKSIVLTSHSMEE 1539
Cdd:PRK10247 164 ITSALDESNKHNVNEIIHRyVREQNIAVLWVTHDKDE 200
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
1357-1535 |
3.05e-06 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 52.03 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1357 GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKM----IGYCPQFDALL 1431
Cdd:PRK10535 19 EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVaTLDADALAQLrrehFGFIFQRYHLL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1432 DDLTGREVLRIFCMLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPA 1511
Cdd:PRK10535 99 SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSH 178
|
170 180
....*....|....*....|....
gi 442617143 1512 ARRQLWNMVCRIRDSGKSIVLTSH 1535
Cdd:PRK10535 179 SGEEVMAILHQLRDRGHTVIIVTH 202
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
1341-1554 |
3.20e-06 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 50.40 E-value: 3.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1341 ELATKNLVLDrvtkyYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTgdeRI---SSGAAYVQGLSL-ESNMNS 1416
Cdd:PRK11231 2 TLRTENLTVG-----YGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA---RLltpQSGTVFLGDKPIsMLSSRQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1417 IYKMIGYCPQFDALLDDLTGREV--------LRIFCMLRGVQESRIRQLSEDLaksfgfmkHI----DKQTHAYSGGNKR 1484
Cdd:PRK11231 74 LARRLALLPQHHLTPEGITVRELvaygrspwLSLWGRLSAEDNARVNQAMEQT--------RInhlaDRRLTDLSGGQRQ 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1485 KLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK11231 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
530-678 |
3.57e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 52.34 E-value: 3.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 530 VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGS----DIrtNIEGARMSLGICPQHNVLFDEmSV 605
Cdd:PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDShnlkDI--NLKWWRSKIGVVSQDPLLFSN-SI 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 606 SNHIRF-------------------FSRMKGL------RGKAVEQ--------------EVAKYLKMIELEDKANVA--- 643
Cdd:PTZ00265 477 KNNIKYslyslkdlealsnyynedgNDSQENKnkrnscRAKCAGDlndmsnttdsneliEMRKNYQTIKDSEVVDVSkkv 556
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 644 --------------------SSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMD 678
Cdd:PTZ00265 557 lihdfvsalpdkyetlvgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
509-574 |
3.94e-06 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 51.66 E-value: 3.94e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 509 PEGKHIG---LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAII 574
Cdd:PRK11819 315 PPGPRLGdkvIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1308-1564 |
3.99e-06 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 51.63 E-value: 3.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1308 RQLISKPPPPPTEGQLDDDVANERERILQMSSNELATKNL---------VLDRVTkyyGQFMAVNQVSLCVQEVECFGLL 1378
Cdd:PRK15134 242 ATLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLqvafpirkgILKRTV---DHNVVVKNISFTLRPGETLGLV 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1379 GVNGAGKTTT----FKMMTgderiSSGAAYVQGLSLEsNMNSiYKMIGYCPQFDALLDD----LTGR-EVLRIFCM-LR- 1447
Cdd:PRK15134 319 GESGSGKSTTglalLRLIN-----SQGEIWFDGQPLH-NLNR-RQLLPVRHRIQVVFQDpnssLNPRlNVLQIIEEgLRv 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1448 -------GVQESRIRQLSEDLAksfgfmkhIDKQT-HAY----SGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQ 1515
Cdd:PRK15134 392 hqptlsaAQREQQVIAVMEEVG--------LDPETrHRYpaefSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQ 463
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 442617143 1516 LWNMVCRIRDSGK-SIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK15134 464 ILALLKSLQQKHQlAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1479-1553 |
4.43e-06 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 51.27 E-value: 4.43e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1479 SGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNG 1553
Cdd:PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNG 467
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
1351-1513 |
4.45e-06 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 50.10 E-value: 4.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1351 RVTKYYGQFmavnqvSLCVQ-----EVECFGLLGVNGAGKTTTFKMMTGDERISSGAAyvqGLSLESnmnsiykmIGYCP 1425
Cdd:cd03237 5 TMKKTLGEF------TLEVEggsisESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI---EIELDT--------VSYKP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1426 Q-----FDALLDDLTgREVLRIFCMLrgvqesriRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAiAVIGSPSVIY 1500
Cdd:cd03237 68 QyikadYEGTVRDLL-SSITKDFYTH--------PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIA-ACLSKDADIY 137
|
170
....*....|....
gi 442617143 1501 L-DEPTTGMDPAAR 1513
Cdd:cd03237 138 LlDEPSAYLDVEQR 151
|
|
| ABCG_PDR_domain2 |
cd03232 |
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding ... |
544-703 |
4.67e-06 |
|
Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213199 [Multi-domain] Cd Length: 192 Bit Score: 49.16 E-value: 4.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 544 TVLLGHNGAGKTTTISML-----TGMfppTSGTAIINGSDIRTNIegaRMSLGICPQHNVLFDEMSVSNHIRFFSRmkgL 618
Cdd:cd03232 36 TALMGESGAGKTTLLDVLagrktAGV---ITGEILINGRPLDKNF---QRSTGYVEQQDVHSPNLTVREALRFSAL---L 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 619 RGKAVEQevakylkmieledkanvassklsggmKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRT 697
Cdd:cd03232 107 RGLSVEQ--------------------------RKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKlADSGQA 160
|
....*.
gi 442617143 698 LLLTTH 703
Cdd:cd03232 161 ILCTIH 166
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
527-703 |
5.53e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 49.10 E-value: 5.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 527 NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSLGicpqHNV-LFDEMSV 605
Cdd:PRK13541 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIG----HNLgLKLEMTV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 606 SNHIRFFSRMkgLRGKAVEQEVAKYLKMIELEDKanvASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQL 685
Cdd:PRK13541 88 FENLKFWSEI--YNSAETLYAAIHYFKLHDLLDE---KCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162
|
170
....*....|....*....
gi 442617143 686 WDLL-QQEKVGRTLLLTTH 703
Cdd:PRK13541 163 NNLIvMKANSGGIVLLSSH 181
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
546-703 |
5.88e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 48.79 E-value: 5.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 546 LLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGARMSL-------GICP----QHNVLFDEMSVSNHIrffsr 614
Cdd:PRK13540 32 LKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLcfvghrsGINPyltlRENCLYDIHFSPGAV----- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 615 mkglrgkaveqEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-EK 693
Cdd:PRK13540 107 -----------GITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEhRA 175
|
170
....*....|
gi 442617143 694 VGRTLLLTTH 703
Cdd:PRK13540 176 KGGAVLLTSH 185
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
539-710 |
5.99e-06 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 48.76 E-value: 5.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 539 FEDEITVLLGHNGAGKTTTIS----MLTGMFPPTSGTAIINGSDIRTNIEGARMSLGIcpqHNVLFDEMSVSNHIRFFsr 614
Cdd:cd03240 20 FFSPLTLIVGQNGAGKTTIIEalkyALTGELPPNSKGGAHDPKLIREGEVRAQVKLAF---ENANGKKYTITRSLAIL-- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 615 mkglRGKA-VEQEVAKYLKMIELEdkanvassKLSGGMKRKLSVC--CAL----CGDTKVVLCDEPSSGMDPSARR-QLW 686
Cdd:cd03240 95 ----ENVIfCHQGESNWPLLDMRG--------RCSGGEKVLASLIirLALaetfGSNCGILALDEPTTNLDEENIEeSLA 162
|
170 180
....*....|....*....|....*....
gi 442617143 687 DLL--QQEKVGRTLLLTTH---FMDEADV 710
Cdd:cd03240 163 EIIeeRKSQKNFQLIVITHdeeLVDAADH 191
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
516-743 |
6.04e-06 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 49.64 E-value: 6.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTG--MFPPTSGTAIINGSDIrTNIEG-ARMSLGI 592
Cdd:CHL00131 8 LEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGhpAYKILEGDILFKGESI-LDLEPeERAHLGI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 593 CPQHNVLFDEMSVSN----HIRFFSRMKGLRGKAVE-----QEVAKYLKMIELEDK---ANVaSSKLSGGMKRKLSVCCA 660
Cdd:CHL00131 87 FLAFQYPIEIPGVSNadflRLAYNSKRKFQGLPELDpleflEIINEKLKLVGMDPSflsRNV-NEGFSGGEKKRNEILQM 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 661 LCGDTKVVLCDEPSSGMDPSARRQLWD----LLQQEKvgrTLLLTTHFMDEAD-VLGDRIAIMCDGELKCQGTSFFLKKQ 735
Cdd:CHL00131 166 ALLDSELAILDETDSGLDIDALKIIAEginkLMTSEN---SIILITHYQRLLDyIKPDYVHVMQNGKIIKTGDAELAKEL 242
|
....*...
gi 442617143 736 YGSGYRLI 743
Cdd:CHL00131 243 EKKGYDWL 250
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
1352-1509 |
6.88e-06 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 50.70 E-value: 6.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1352 VTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVqGLSLEsnmnsiykmIGYCPQF-DAL 1430
Cdd:TIGR03719 328 LTKAFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEI-GETVK---------LAYVDQSrDAL 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1431 LDDLT-------GREVLRIfcmlrGVQESRIRQlsedLAKSFGFmKHIDKQTHA--YSGGNKRKLSTAIAVIGSPSVIYL 1501
Cdd:TIGR03719 398 DPNKTvweeisgGLDIIKL-----GKREIPSRA----YVGRFNF-KGSDQQKKVgqLSGGERNRVHLAKTLKSGGNVLLL 467
|
....*...
gi 442617143 1502 DEPTTGMD 1509
Cdd:TIGR03719 468 DEPTNDLD 475
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
1364-1536 |
9.64e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 48.33 E-value: 9.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1364 QVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAayvqgLSLESNmNSIYKMIG----YCPQFDALLDDLTGREV 1439
Cdd:PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT-----IKLDGG-DIDDPDVAeachYLGHRNAMKPALTVAEN 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1440 LRIFCMLRGVQESRIrqlsEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTA-IAVIGSPsVIYLDEPTTGMDPAARRQLWN 1518
Cdd:PRK13539 94 LEFWAAFLGGEELDI----AAALEAVGLAPLAHLPFGYLSAGQKRRVALArLLVSNRP-IWILDEPTAALDAAAVALFAE 168
|
170
....*....|....*...
gi 442617143 1519 MVCRIRDSGKSIVLTSHS 1536
Cdd:PRK13539 169 LIRAHLAQGGIVIAATHI 186
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1355-1539 |
9.69e-06 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 49.26 E-value: 9.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1355 YYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMT------GDERISSGAAYVQGLSLESNMN------------- 1415
Cdd:PRK14258 16 YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNrmneleSEVRVEGRVEFFNQNIYERRVNlnrlrrqvsmvhp 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1416 -------SIY-------KMIGYCPQFDallddltgrevlrifcmLRGVQESRIRQlsedlAKSFGFMKH-IDKQTHAYSG 1480
Cdd:PRK14258 96 kpnlfpmSVYdnvaygvKIVGWRPKLE-----------------IDDIVESALKD-----ADLWDEIKHkIHKSALDLSG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1481 GNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIR-DSGKSIVLTSHSMEE 1539
Cdd:PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRlRSELTMVIVSHNLHQ 213
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
1362-1555 |
9.74e-06 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 50.17 E-value: 9.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKT-----------------TTFK------MMTGDERISSGAAYV------QGLSLes 1412
Cdd:NF040905 276 VDDVSLNVRRGEIVGIAGLMGAGRTelamsvfgrsygrnisgTVFKdgkevdVSTVSDAIDAGLAYVtedrkgYGLNL-- 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1413 nMNSIYKMIGYcpqfdALLDDLTGREVlrifcmlrgVQESRIRQLSEDLAKSFGFMKH-IDKQTHAYSGGNKRKLSTAIA 1491
Cdd:NF040905 354 -IDDIKRNITL-----ANLGKVSRRGV---------IDENEEIKVAEEYRKKMNIKTPsVFQKVGNLSGGNQQKVVLSKW 418
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1492 VIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEF 1555
Cdd:NF040905 419 LFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEGKGVIVISSELPELLGMCDRIYVMNEGRI 482
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
1362-1511 |
1.32e-05 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 48.03 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG--DERIS-SGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGRE 1438
Cdd:cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANrtEGNVSvEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRE 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 1439 VLRIFCMLRGVQESRirqlsedlaksfGFmkhidkqthaySGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPA 1511
Cdd:cd03233 103 TLDFALRCKGNEFVR------------GI-----------SGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1337-1537 |
1.46e-05 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 48.59 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1337 MSSNELatKNLVldrvTKYYGQfMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYV----------- 1405
Cdd:PRK11264 1 MSAIEV--KNLV----KKFHGQ-TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVgditidtarsl 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1406 ---QGL--SLESNMNSIYKMIGYCPQFDALLDDLTGREVLRifCMLRGVQESRIRQLsedLAKsFGFMKHIDKQTHAYSG 1480
Cdd:PRK11264 74 sqqKGLirQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARAREL---LAK-VGLAGKETSYPRRLSG 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1481 GNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSM 1537
Cdd:PRK11264 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM 204
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
527-724 |
1.56e-05 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 49.54 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 527 NKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFP-PTSGTAIINGSDIRTNIEGARMSLGIC------PQHNVL 599
Cdd:PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPgRWEGEIFIDGKPVKIRNPQQAIAQGIAmvpedrKRDGIV 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 600 FDeMSVSNHI------RFFSRM---KGLRGKAVEQEVAKyLKMIELEDKANVASskLSGGMKRKLSVCCALCGDTKVVLC 670
Cdd:PRK13549 354 PV-MGVGKNItlaaldRFTGGSridDAAELKTILESIQR-LKVKTASPELAIAR--LSGGNQQKAVLAKCLLLNPKILIL 429
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 671 DEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEadVLG--DRIAIMCDGELK 724
Cdd:PRK13549 430 DEPTRGIDVGAKYEIYKLINQlVQQGVAIIVISSELPE--VLGlsDRVLVMHEGKLK 484
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1336-1573 |
1.60e-05 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 48.95 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1336 QMSSNELATKNLvldRVT--KYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKT-TTFKMM---TGDERISsGAAYVQG-- 1407
Cdd:PRK09473 7 QQADALLDVKDL---RVTfsTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSqTAFALMgllAANGRIG-GSATFNGre 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1408 -LSL-ESNMNSI----YKMIGYCPQ-----FDALLDDLTgrEVLrifcML-RGVQ-----ESRIRQLseDLAKSFGFMKH 1470
Cdd:PRK09473 83 iLNLpEKELNKLraeqISMIFQDPMtslnpYMRVGEQLM--EVL----MLhKGMSkaeafEESVRML--DAVKMPEARKR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1471 IDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAI 1549
Cdd:PRK09473 155 MKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELkREFNTAIIMITHDLGVVAGICDKVLV 234
|
250 260
....*....|....*....|....*...
gi 442617143 1550 MVNGEFKCIGSTQHL----KNKFSKGLI 1573
Cdd:PRK09473 235 MYAGRTMEYGNARDVfyqpSHPYSIGLL 262
|
|
| AAA_21 |
pfam13304 |
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
1412-1538 |
1.78e-05 |
|
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.
Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 48.54 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1412 SNMNSIYKMIGYCPQFDALLDDLTGREVLRIfcmLRGVQESRIRQLSEDLAKSFGFMKHIDKQTHAY--SGGNKRKLSTA 1489
Cdd:pfam13304 172 AADLALFPDLKELLQRLVRGLKLADLNLSDL---GEGIEKSLLVDDRLRERGLILLENGGGGELPAFelSDGTKRLLALL 248
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1490 IAVI---GSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSME 1538
Cdd:pfam13304 249 AALLsalPKGGLLLIDEPESGLHPKLLRRLLELLKELSRNGAQLILTTHSPL 300
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1476-1567 |
2.49e-05 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 48.36 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1476 HAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:COG4170 157 HELTEGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLnQLQGTSILLISHDLESISQWADTITVLYCGQ 236
|
90
....*....|...
gi 442617143 1555 FKCIGSTQHLKNK 1567
Cdd:COG4170 237 TVESGPTEQILKS 249
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
542-721 |
2.60e-05 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 47.33 E-value: 2.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRTNIEGA-----RMSLGICPQHNVLFDEmSVSNHIRFFSRMK 616
Cdd:cd03290 28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAtrsrnRYSVAYAAQKPWLLNA-TVEENITFGSPFN 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 617 GLRGKAVEQ--EVAKYLKMIELEDKANVASS--KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLW-----D 687
Cdd:cd03290 107 KQRYKAVTDacSLQPDIDLLPFGDQTEIGERgiNLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMqegilK 186
|
170 180 190
....*....|....*....|....*....|....*..
gi 442617143 688 LLQQEKvgRTLLLTTH---FMDEAdvlgDRIAIMCDG 721
Cdd:cd03290 187 FLQDDK--RTLVLVTHklqYLPHA----DWIIAMKDG 217
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
548-728 |
2.63e-05 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 49.05 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 548 GHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDEmSVSNHIRFfsrmkGlRGKAVEQE 626
Cdd:COG5265 391 GPSGAGKSTLARLLFRFYDVTSGRILIDGQDIRDvTQASLRAAIGIVPQDTVLFND-TIAYNIAY-----G-RPDASEEE 463
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 627 VAKYLKMIELEDkaNVASS-------------KLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEK 693
Cdd:COG5265 464 VEAAARAAQIHD--FIESLpdgydtrvgerglKLSGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVA 541
|
170 180 190
....*....|....*....|....*....|....*....
gi 442617143 694 VGRTLLLTTH----FMDeadvlGDRIAIMCDGELKCQGT 728
Cdd:COG5265 542 RGRTTLVIAHrlstIVD-----ADEILVLEAGRIVERGT 575
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
516-721 |
3.05e-05 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 48.63 E-value: 3.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNkmvVKGLS---MNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTS--GTAIING-----SDIRtnieg 585
Cdd:NF040905 2 LEMRGITKTFPG---VKALDdvnLSVREGEIHALCGENGAGKSTLMKVLSGVYPHGSyeGEILFDGevcrfKDIR----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 586 ARMSLGICPQHN--VLFDEMSVSNHIrFFSRMKGLRG----KAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCC 659
Cdd:NF040905 74 DSEALGIVIIHQelALIPYLSIAENI-FLGNERAKRGvidwNETNRRARELLAKVGLDESPDTLVTDIGVGKQQLVEIAK 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442617143 660 ALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKV-GRTLLLTTHFMDEADVLGDRIAIMCDG 721
Cdd:NF040905 153 ALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAqGITSIIISHKLNEIRRVADSITVLRDG 215
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
1347-1564 |
3.10e-05 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 47.48 E-value: 3.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYG--QFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGY 1423
Cdd:cd03252 1 ITFEHVRFRYKpdGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALaDPAWLRRQVGV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1424 CPQFDALL-----DDL----TGREVLRIF--CMLRGVQESrIRQLSEdlaksfGFMKHIDKQTHAYSGGNKRKLSTAIAV 1492
Cdd:cd03252 81 VLQENVLFnrsirDNIaladPGMSMERVIeaAKLAGAHDF-ISELPE------GYDTIVGEQGAGLSGGQRQRIAIARAL 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442617143 1493 IGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDsGKSIVLTSHSMEECEAlCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:cd03252 154 IHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDEL 223
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
1365-1510 |
3.11e-05 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 47.22 E-value: 3.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1365 VSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGYCPQFDALLDDlTGREVLRIF 1443
Cdd:cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDiSRKSLRSMIGVVLQDTFLFSG-TIMENIRLG 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1444 -------CMLRGVQESRIRQLSEDLAKsfGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDP 1510
Cdd:cd03254 101 rpnatdeEVIEAAKEAGAHDFIMKLPN--GYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
544-737 |
3.85e-05 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 48.48 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 544 TV-LLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFDEmSVSNHI-----RFFSRmk 616
Cdd:PRK11176 371 TVaLVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDyTLASLRNQVALVSQNVHLFND-TIANNIayartEQYSR-- 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 617 glrgKAVEQ--EVAKYLKMIELEDKA-------NVASskLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWD 687
Cdd:PRK11176 448 ----EQIEEaaRMAYAMDFINKMDNGldtvigeNGVL--LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 442617143 688 LLQQEKVGRTLLLTTHFMDEADVlGDRIAIMCDGELKCQGTSFFLKKQYG 737
Cdd:PRK11176 522 ALDELQKNRTSLVIAHRLSTIEK-ADEILVVEDGEIVERGTHAELLAQNG 570
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
531-722 |
4.21e-05 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 48.31 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 531 VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIR-----------------TNIEGARMSLGIC 593
Cdd:PRK10261 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRrrsrqvielseqsaaqmRHVRGADMAMIFQ 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEMSVSNHIRFFSRM-KGLRGKAVEQEVAKYLKMIELEDKANVASS---KLSGGMKRKLSVCCALCGDTKVVL 669
Cdd:PRK10261 112 EPMTSLNPVFTVGEQIAESIRLhQGASREEAMVEAKRMLDQVRIPEAQTILSRyphQLSGGMRQRVMIAMALSCRPAVLI 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 670 CDEPSSGMDPSARRQLWDL---LQQEkVGRTLLLTTHFMDEADVLGDRIAIMCDGE 722
Cdd:PRK10261 192 ADEPTTALDVTIQAQILQLikvLQKE-MSMGVIFITHDMGVVAEIADRVLVMYQGE 246
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
1453-1536 |
5.32e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 45.78 E-value: 5.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1453 RIRQLSEDLAKSFGFMKhIDKQTHAYSGGNKR--KLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSI 1530
Cdd:cd03238 64 FIDQLQFLIDVGLGYLT-LGQKLSTLSGGELQrvKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTV 142
|
....*.
gi 442617143 1531 VLTSHS 1536
Cdd:cd03238 143 ILIEHN 148
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
534-724 |
7.26e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 46.35 E-value: 7.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 534 LSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGsdirtNIEGARMSLGICPQhnvlfdeMSVSNHIRFFS 613
Cdd:PRK13546 43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-----EVSVIAISAGLSGQ-------LTGIENIEFKM 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 614 RMKGLRGKAVEQEVAKYLKMIELEDKANVASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEK 693
Cdd:PRK13546 111 LCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK 190
|
170 180 190
....*....|....*....|....*....|..
gi 442617143 694 -VGRTLLLTTHFMDEADVLGDRIAIMCDGELK 724
Cdd:PRK13546 191 eQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLK 222
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
543-703 |
7.43e-05 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 47.92 E-value: 7.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 543 ITVLLGHNGAGKTTTISMLTGMfpPTSGtaIINGsDIRtnIEG--------ARMSlGICPQHNVLFDEMSVSNHIRF--F 612
Cdd:PLN03140 908 LTALMGVSGAGKTTLMDVLAGR--KTGG--YIEG-DIR--ISGfpkkqetfARIS-GYCEQNDIHSPQVTVRESLIYsaF 979
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 613 SRMKglrgkaveQEVAKYLKMI---------ELEDKANV-----ASSKLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMD 678
Cdd:PLN03140 980 LRLP--------KEVSKEEKMMfvdevmelvELDNLKDAivglpGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
|
170 180
....*....|....*....|....*.
gi 442617143 679 PSARRQLWDLLQQE-KVGRTLLLTTH 703
Cdd:PLN03140 1052 ARAAAIVMRTVRNTvDTGRTVVCTIH 1077
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
1366-1535 |
7.80e-05 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 45.57 E-value: 7.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1366 SLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCM 1445
Cdd:PRK13538 21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1446 LRGVQ-ESRIRQLsedLAKsFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIR 1524
Cdd:PRK13538 101 LHGPGdDEALWEA---LAQ-VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA 176
|
170
....*....|.
gi 442617143 1525 DSGKSIVLTSH 1535
Cdd:PRK13538 177 EQGGMVILTTH 187
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1340-1564 |
9.37e-05 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 46.06 E-value: 9.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1340 NELATKNLVLDrvtkyYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMT------GDERISsGAAYVQG------ 1407
Cdd:PRK14247 2 NKIEIRDLKVS-----FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNrlielyPEARVS-GEVYLDGqdifkm 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1408 --LSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQEsRIRQLSEDlAKSFGFMKH-IDKQTHAYSGGNKR 1484
Cdd:PRK14247 76 dvIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-RVRWALEK-AQLWDEVKDrLDAPAGKLSGGQQQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1485 KLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSgKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD-MTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
499-721 |
9.90e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 47.03 E-value: 9.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 499 QRDPKAFETEpegKHIGLQMRHLKKRfgNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSD 578
Cdd:PRK10982 237 QRFPDKENKP---GEVILEVRNLTSL--RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKK 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 579 IRTN------------IEGARMSLGICPQHNVLFDEMsVSNHIRFFSRMKGL---RGKAVEQEVAKYLKMIELEDKANVA 643
Cdd:PRK10982 312 INNHnaneainhgfalVTEERRSTGIYAYLDIGFNSL-ISNIRNYKNKVGLLdnsRMKSDTQWVIDSMRVKTPGHRTQIG 390
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 644 SskLSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDG 721
Cdd:PRK10982 391 S--LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAElAKKDKGIIIISSEMPELLGITDRILVMSNG 467
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
498-744 |
1.02e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 47.25 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 498 EQRDPKAFETEP----EGKHIGLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAI 573
Cdd:TIGR00957 617 EELEPDSIERRTikpgEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 574 INGSdirtniegarmsLGICPQHNVLFDEmSVSNHIRFFSRMKGLRGKAVEQEVAKY--LKMIELEDKANVASS--KLSG 649
Cdd:TIGR00957 697 MKGS------------VAYVPQQAWIQND-SLRENILFGKALNEKYYQQVLEACALLpdLEILPSGDRTEIGEKgvNLSG 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 650 GMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWD-LLQQEKV--GRTLLLTTH---FMDEADVlgdrIAIMCDGEL 723
Cdd:TIGR00957 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEhVIGPEGVlkNKTRILVTHgisYLPQVDV----IIVMSGGKI 839
|
250 260
....*....|....*....|.
gi 442617143 724 KCQGTSFFLKKQYGSGYRLIC 744
Cdd:TIGR00957 840 SEMGSYQELLQRDGAFAEFLR 860
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1376-1509 |
1.10e-04 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 47.04 E-value: 1.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1376 GLLGVNGAGKTTTFKMMTGDERISSGAAYVqGLSLEsnmnsiykmIGYCPQF-DALLDDLT-------GREVLRIfcmlr 1447
Cdd:PRK11819 354 GIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVK---------LAYVDQSrDALDPNKTvweeisgGLDIIKV----- 418
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442617143 1448 GVQE--SRirqlsedlA--KSFGFmKHIDKQTHA--YSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMD 1509
Cdd:PRK11819 419 GNREipSR--------AyvGRFNF-KGGDQQKKVgvLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
1362-1511 |
1.12e-04 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 45.92 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESnmnsiY------KMIGYCPQFDALLDDLT 1435
Cdd:PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD-----WspaelaRRRAVLPQHSSLSFPFT 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1436 GREVLRIFCMLRGVQESRIRQLSE---------DLAksfgfmkhiDKQTHAYSGGNK------RKLSTAIAVIGSPSVIY 1500
Cdd:PRK13548 93 VEEVVAMGRAPHGLSRAEDDALVAaalaqvdlaHLA---------GRDYPQLSGGEQqrvqlaRVLAQLWEPDGPPRWLL 163
|
170
....*....|.
gi 442617143 1501 LDEPTTGMDPA 1511
Cdd:PRK13548 164 LDEPTSALDLA 174
|
|
| PRK13541 |
PRK13541 |
cytochrome c biogenesis protein CcmA; Provisional |
1379-1536 |
1.16e-04 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184128 [Multi-domain] Cd Length: 195 Bit Score: 44.86 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1379 GVNGAGKTTTFKMMTGDERISSGAAYVQglslESNMNSIYK-MIGYCPQFDALLDDLTGREVLRIFcmlrgvqeSRIRQL 1457
Cdd:PRK13541 33 GANGCGKSSLLRMIAGIMQPSSGNIYYK----NCNINNIAKpYCTYIGHNLGLKLEMTVFENLKFW--------SEIYNS 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1458 SEDLAKSFGFMK---HIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTS 1534
Cdd:PRK13541 101 AETLYAAIHYFKlhdLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSS 180
|
..
gi 442617143 1535 HS 1536
Cdd:PRK13541 181 HL 182
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
542-728 |
1.16e-04 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 45.69 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFpPTSGTAIINGSDIRT--NIEGARMSLGICPQHNVLFdEMSVSNHIRFFsrmkgLR 619
Cdd:PRK03695 23 EILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAwsAAELARHRAYLSQQQTPPF-AMPVFQYLTLH-----QP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 620 GKAVEQEVAKYLKMI----ELEDKANVASSKLSGGMKRK-------LSVCCALCGDTKVVLCDEPSSGMDpSARRQLWDL 688
Cdd:PRK03695 96 DKTRTEAVASALNEVaealGLDDKLGRSVNQLSGGEWQRvrlaavvLQVWPDINPAGQLLLLDEPMNSLD-VAQQAALDR 174
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442617143 689 LQQE--KVGRTLLLTTHFMDEADVLGDRIAIMCDGELKCQGT 728
Cdd:PRK03695 175 LLSElcQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
1354-1516 |
1.22e-04 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 46.88 E-value: 1.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1354 KYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMtgdERI---SSGAAYVQGLSLES-NMNSIYKMIGYCPQfDA 1429
Cdd:PRK13657 343 SYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL---QRVfdpQSGRILIDGTDIRTvTRASLRRNIAVVFQ-DA 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1430 LLDDLTGREVLRIFCmlRGVQESRIRQLSED-------LAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLD 1502
Cdd:PRK13657 419 GLFNRSIEDNIRVGR--PDATDEEMRAAAERaqahdfiERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496
|
170
....*....|....
gi 442617143 1503 EPTTGMDPAARRQL 1516
Cdd:PRK13657 497 EATSALDVETEAKV 510
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
1350-1564 |
1.26e-04 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 45.75 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1350 DRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLESNMN-SIYKMIGYCPQFD 1428
Cdd:PRK10253 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASkEVARRIGLLAQNA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1429 ALLDDLTGREVLRifcmlRGVQE-----SRIRQLSEDLA----KSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVI 1499
Cdd:PRK10253 91 TTPGDITVQELVA-----RGRYPhqplfTRWRKEDEEAVtkamQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIM 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1500 YLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK10253 166 LLDEPTTWLDISHQIDLLELLSELnREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
1362-1564 |
1.31e-04 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 45.86 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1362 VNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTG-DERIS----SGAAYVQGLSLES--NMNSIYKMIGYC-----PQFDA 1429
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRmNDKVSgyrySGDVLLGGRSIFNyrDVLEFRRRVGMLfqrpnPFPMS 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1430 LLDD-LTGREVLRIFCM--LRGVQESRIRQLS-EDLAKSfgfmkHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPT 1505
Cdd:PRK14271 117 IMDNvLAGVRAHKLVPRkeFRGVAQARLTEVGlWDAVKD-----RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPT 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1506 TGMDPAARRQLWNMVCRIRDSgKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK14271 192 SALDPTTTEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
516-729 |
1.33e-04 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 45.89 E-value: 1.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 516 LQMRHLKKRFGNKMV----VKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGM--FPP--TSGTAIINGSDI-------R 580
Cdd:PRK11022 4 LNVDKLSVHFGDESApfraVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLidYPGrvMAEKLEFNGQDLqrisekeR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 581 TNIEGARMSLgicpqhnVLFDEMSVSN--HIRFFSRMKGLR------GKAVEQEVAKYLKMIELEDKA---NVASSKLSG 649
Cdd:PRK11022 84 RNLVGAEVAM-------IFQDPMTSLNpcYTVGFQIMEAIKvhqggnKKTRRQRAIDLLNQVGIPDPAsrlDVYPHQLSG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 650 GMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLL--QQEKVGRTLLLTTHfmDEADV--LGDRIAIMCDGELKC 725
Cdd:PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLleLQQKENMALVLITH--DLALVaeAAHKIIVMYAGQVVE 234
|
....
gi 442617143 726 QGTS 729
Cdd:PRK11022 235 TGKA 238
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1481-1554 |
1.58e-04 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 45.95 E-value: 1.58e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1481 GNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLnQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
1361-1509 |
3.29e-04 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 44.14 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSL-ESNMNSIYKMIGYCPQfDALLDDLTGREV 1439
Cdd:cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVrDYTLASLRRQIGLVSQ-DVFLFNDTVAEN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1440 LRIfcMLRGVQESRIrqlsEDLAKSFGFMKHIDKQTHAY-----------SGGNKRKLSTAIAVIGSPSVIYLDEPTTGM 1508
Cdd:cd03251 96 IAY--GRPGATREEV----EEAARAANAHEFIMELPEGYdtvigergvklSGGQRQRIAIARALLKDPPILILDEATSAL 169
|
.
gi 442617143 1509 D 1509
Cdd:cd03251 170 D 170
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1337-1554 |
3.52e-04 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 45.31 E-value: 3.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1337 MSSNELATKNlvldrVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGderIS-----SGAAYVQGLSLE 1411
Cdd:PRK13549 1 MMEYLLEMKN-----ITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG---VYphgtyEGEIIFEGEELQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1412 SN--MNSIYKMIGYCPQFDALLDDLT-------GREVLRIFCMLRGVQESRIRQLSEDLaksfgfmkHIDKQTHA----Y 1478
Cdd:PRK13549 73 ASniRDTERAGIAIIHQELALVKELSvleniflGNEITPGGIMDYDAMYLRAQKLLAQL--------KLDINPATpvgnL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442617143 1479 SGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK13549 145 GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
1357-1564 |
5.06e-04 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 44.85 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1357 GQFMAVNQVSLCVQEVECFGLLGVNGAGKTTT-FKMMTGDERiSSGAAYVQGLSLESNMNsiyKMIGYCPQFDALLDDLT 1435
Cdd:PRK10261 27 QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTaLALMRLLEQ-AGGLVQCDKMLLRRRSR---QVIELSEQSAAQMRHVR 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1436 GREVLRIF-----------CMLRGVQES-RIRQ---LSEDLAKSFGFMKHI---DKQT------HAYSGGNKRKLSTAIA 1491
Cdd:PRK10261 103 GADMAMIFqepmtslnpvfTVGEQIAESiRLHQgasREEAMVEAKRMLDQVripEAQTilsrypHQLSGGMRQRVMIAMA 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442617143 1492 VIGSPSVIYLDEPTTGMDPAARRQLWNMVCRI-RDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKCIGSTQHL 1564
Cdd:PRK10261 183 LSCRPAVLIADEPTTALDVTIQAQILQLIKVLqKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
647-728 |
5.08e-04 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 44.62 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 647 LSGGMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQ-EKVGRTLLLTTHFMDEADVLGDRIAIMCDGELKC 725
Cdd:PRK10938 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASlHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE 215
|
...
gi 442617143 726 QGT 728
Cdd:PRK10938 216 TGE 218
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
501-703 |
5.29e-04 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 44.90 E-value: 5.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 501 DPKAFETEPEGKHIGLQMRHLKKRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPpTSGTAIING-SDI 579
Cdd:TIGR01271 1205 NPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGvSWN 1283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 580 RTNIEGARMSLGICPQHNVLFD---EMSVSNHIRF-------FSRMKGLRgKAVEQEVAKYlkMIELEDKANVasskLSG 649
Cdd:TIGR01271 1284 SVTLQTWRKAFGVIPQKVFIFSgtfRKNLDPYEQWsdeeiwkVAEEVGLK-SVIEQFPDKL--DFVLVDGGYV----LSN 1356
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 442617143 650 GMKRKLSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTH 703
Cdd:TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEH 1410
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
1377-1511 |
5.40e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 45.10 E-value: 5.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1377 LLGVNGAGKTTTFKMMTGD----ERISSGAAYVQGLSLESNMNSIYKMIGYCPQFDALLDDLTGREVLRIFCMLRGVQ-- 1450
Cdd:TIGR00956 92 VLGRPGSGCSTLLKTIASNtdgfHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQnr 171
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442617143 1451 ------ESRIRQLSEDLAKSFGFmkhidkqTHAY------------SGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPA 1511
Cdd:TIGR00956 172 pdgvsrEEYAKHIADVYMATYGL-------SHTRntkvgndfvrgvSGGERKRVSIAEASLGGAKIQCWDNATRGLDSA 243
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
530-611 |
7.70e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 44.34 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 530 VVKGLSMNMFEDEITVLLGHNGAGKTttiSMLTGMF---PPTSGTAIINGSDIRT-NIEGARMSLGICPQHNVLFdemsv 605
Cdd:PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKS---SMLNALFrivELERGRILIDGCDISKfGLMDLRKVLGIIPQAPVLF----- 1325
|
....*.
gi 442617143 606 SNHIRF 611
Cdd:PLN03130 1326 SGTVRF 1331
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
515-685 |
8.38e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 44.38 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 515 GLQMRHlkkRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGTAIINGSDIRT-NIEGARMSLGIC 593
Cdd:PTZ00243 1313 GVQMRY---REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAyGLRELRRQFSMI 1389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 594 PQHNVLFDEmSVSNHIRFFSrmkglrgKAVEQEVAKYLKMIELEDKanVASSK-------LSGGM-----KRKLsVCCA- 660
Cdd:PTZ00243 1390 PQDPVLFDG-TVRQNVDPFL-------EASSAEVWAALELVGLRER--VASESegidsrvLEGGSnysvgQRQL-MCMAr 1458
|
170 180
....*....|....*....|....*..
gi 442617143 661 --LCGDTKVVLCDEPSSGMDPSARRQL 685
Cdd:PTZ00243 1459 alLKKGSGFILMDEATANIDPALDRQI 1485
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
1352-1582 |
8.43e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 43.95 E-value: 8.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1352 VTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGL---------SLESNMNSIYKMIG 1422
Cdd:PRK10982 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKeidfksskeALENGISMVHQELN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1423 YCPQFDALLDDLTGREVLRIFCmlrgVQESRIRQLSEDLAKSFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLD 1502
Cdd:PRK10982 84 LVLQRSVMDNMWLGRYPTKGMF----VDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1503 EPTTGMDPAARRQLWNMVCRIRDSGKSIVLTSHSMEECEALCTRLAIMVNGEFKcigSTQHLKnKFSKGLILKIKVRRNL 1582
Cdd:PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI---ATQPLA-GLTMDKIIAMMVGRSL 235
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
523-703 |
1.02e-03 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 43.71 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 523 KRFGNKMVVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTS--GTAIINGSDIRTNIegaRMSLGICPQHNVLF 600
Cdd:PLN03211 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNftGTILANNRKPTKQI---LKRTGFVTQDDILY 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 601 DEMSVSNHIRFFSRMKGLRGKA------VEQEVAKYLKMIELEDK--ANVASSKLSGGMKRKLSVCCALCGDTKVVLCDE 672
Cdd:PLN03211 153 PHLTVRETLVFCSLLRLPKSLTkqekilVAESVISELGLTKCENTiiGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232
|
170 180 190
....*....|....*....|....*....|..
gi 442617143 673 PSSGMDP-SARRQLWDLLQQEKVGRTLLLTTH 703
Cdd:PLN03211 233 PTSGLDAtAAYRLVLTLGSLAQKGKTIVTSMH 264
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1347-1554 |
1.09e-03 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 42.61 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1347 LVLDRVTKYYGQFMAVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGdeRISSGAAYVQGLSLESNMNSIYKM------ 1420
Cdd:PRK11701 7 LSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA--RLAPDAGEVHYRMRDGQLRDLYALseaerr 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1421 ------IGYCPQFDAllDDLTGR--------EVLrifcMLRGVQE-SRIRQLSED-LAKSFGFMKHIDKQTHAYSGGNKR 1484
Cdd:PRK11701 85 rllrteWGFVHQHPR--DGLRMQvsaggnigERL----MAVGARHyGDIRATAGDwLERVEIDAARIDDLPTTFSGGMQQ 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442617143 1485 KLSTAIAVIGSPSVIYLDEPTTGMDPA--AR-----RQLwnmvcrIRDSGKSIVLTSHSMEECEALCTRLAIMVNGE 1554
Cdd:PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSvqARlldllRGL------VRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
666-722 |
1.66e-03 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 43.13 E-value: 1.66e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442617143 666 KVVLCDEPSSGMDPSARRQLWDLLQ--QEKVGRTLLLTTHfmDEADV--LGDRIAIMCDGE 722
Cdd:COG4172 445 KLLVLDEPTSALDVSVQAQILDLLRdlQREHGLAYLFISH--DLAVVraLAHRVMVMKDGK 503
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
1361-1516 |
2.63e-03 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 42.40 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1361 AVNQVSLCVQEVECFGLLGVNGAGKTTTFKMMTGDERISSGAAYVQGLSLES-NMNSIYKMIGYCPQFDALLDDLTGREV 1439
Cdd:TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADyTLASLRRQVALVSQDVVLFNDTIANNI 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1440 LriFCMLRGVQESRIRQLSEDL-AKSF------GFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAA 1512
Cdd:TIGR02203 427 A--YGRTEQADRAEIERALAAAyAQDFvdklplGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504
|
....
gi 442617143 1513 RRQL 1516
Cdd:TIGR02203 505 ERLV 508
|
|
| PRK11819 |
PRK11819 |
putative ABC transporter ATP-binding protein; Reviewed |
1376-1439 |
3.91e-03 |
|
putative ABC transporter ATP-binding protein; Reviewed
Pssm-ID: 236992 [Multi-domain] Cd Length: 556 Bit Score: 42.03 E-value: 3.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442617143 1376 GLLGVNGAGKTTTFKMMTGDERISSGAAYVQ-GLSlesnmnsiykmIGYCPQFDALLDDLTGREV 1439
Cdd:PRK11819 37 GVLGLNGAGKSTLLRIMAGVDKEFEGEARPApGIK-----------VGYLPQEPQLDPEKTVREN 90
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
542-723 |
4.44e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 39.66 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 542 EITVLLGHNGAGKTTTISMLTGMFPPTSGTAI-INGSDIRTNIEGARMSLGICPQHNVLFDEMsvsnhirffsRMKGLRg 620
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIyIDGEDILEEVLDQLLLIIVGGKKASGSGEL----------RLRLAL- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 621 kaveqEVAKYLKmieledkanvassklsggmkrklsvccalcgdTKVVLCDEPSSGMDPSARRQLWDLLQ-------QEK 693
Cdd:smart00382 72 -----ALARKLK--------------------------------PDVLILDEITSLLDAEQEALLLLLEElrlllllKSE 114
|
170 180 190
....*....|....*....|....*....|
gi 442617143 694 VGRTLLLTTHfmDEADVLGDRIAIMCDGEL 723
Cdd:smart00382 115 KNLTVILTTN--DEKDLGPALLRRRFDRRI 142
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
642-713 |
4.94e-03 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 39.65 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 642 VASSKLSGGMKRKLSVCCAL----CGDTKVVLCDEPSSGMDPS-ARRQLWDLLQQEKVGRTLLLTTH---FMDEADVLGD 713
Cdd:cd03227 73 FTRLQLSGGEKELSALALILalasLKPRPLYILDEIDRGLDPRdGQALAEAILEHLVKGAQVIVITHlpeLAELADKLIH 152
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
1377-1535 |
5.30e-03 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 41.69 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1377 LLGVNGAGKTTTFKMMTGDERISSGAAYVQglslesnmnsiyKMIGYCPQfDALLDDLTGREVLRIFCMLRGVQES---R 1453
Cdd:PTZ00243 691 VLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQ-QAWIMNATVRGNILFFDEEDAARLAdavR 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 1454 IRQLSEDLAK-SFGFMKHIDKQTHAYSGGNKRKLSTAIAVIGSPSVIYLDEPTTGMDPAARRQLWNMVCRIRDSGKSIVL 1532
Cdd:PTZ00243 758 VSQLEADLAQlGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL 837
|
...
gi 442617143 1533 TSH 1535
Cdd:PTZ00243 838 ATH 840
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
528-724 |
5.76e-03 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 40.61 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 528 KMVVKGLSMNMFEDEITVL---------------LGHNGAGKTTTISMLTGMFpPTSGTAIINGSDIRT-NIEGARMSLG 591
Cdd:cd03289 2 QMTVKDLTAKYTEGGNAVLenisfsispgqrvglLGRTGSGKSTLLSAFLRLL-NTEGDIQIDGVSWNSvPLQKWRKAFG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 592 ICPQHNVLFdemsvSNHIRffsrmKGL--RGKAVEQEVAKY-----LKMI----------ELEDKANVasskLSGGMKRK 654
Cdd:cd03289 81 VIPQKVFIF-----SGTFR-----KNLdpYGKWSDEEIWKVaeevgLKSVieqfpgqldfVLVDGGCV----LSHGHKQL 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 655 LSVCCALCGDTKVVLCDEPSSGMDPSARRQLWDLLQQEKVGRTLLLTTHFMdEADVLGDRIAIMCDGELK 724
Cdd:cd03289 147 MCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRI-EAMLECQRFLVIEENKVR 215
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
530-728 |
6.76e-03 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 40.61 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 530 VVKGLSMNMFEDEITVLLGHNGAGKTTTISMLTGMFPPTSGtaIINGSdirtniegARMSLgiCPQ----------HNVL 599
Cdd:cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG--KIKHS--------GRISF--SSQfswimpgtikENII 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442617143 600 FdemSVS-NHIRFFSRMKGLRgkaVEQEVAKYLKmielEDKANVASS--KLSGGMKRKLSVCCALCGDTKVVLCDEPSSG 676
Cdd:cd03291 120 F---GVSyDEYRYKSVVKACQ---LEEDITKFPE----KDNTVLGEGgiTLSGGQRARISLARAVYKDADLYLLDSPFGY 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 442617143 677 MDPSARRQLWD-LLQQEKVGRTLLLTTHFMDEADVlGDRIAIMCDGELKCQGT 728
Cdd:cd03291 190 LDVFTEKEIFEsCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFYGT 241
|
|
| |
