|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
306-775 |
1.85e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 306 EEEEVNLQQLTKALEEELRGIDGDHEQsnmLRALAALQATELGNYRLAYRQQHEENLKLRADNKAANQRVALLAVEVDER 385
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEE---LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 386 HASLED--NSKKQVQQLEQRHASMVREITLRMTNDRDhwtsmtgkLEAQLKSLEQEEIRLRTELELVRTENTELESEQQK 463
Cdd:COG1196 389 LEALRAaaELAAQLEELEEAEEALLERLERLEEELEE--------LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 464 AHIQITELLEQNIKLNQELAQTSSSIGGtpehspLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEI---- 539
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAE------AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIgvea 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 540 ----------ESLNVELIRSKTKAKKQEKQEKQEDQESAAT------ATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQS 603
Cdd:COG1196 535 ayeaaleaalAAALQNIVVEDDEVAAAAIEYLKAAKAGRATflpldkIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 604 DASNSGDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAyedcEDYWQTKLS 683
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL----EELAERLAE 690
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 684 EERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQfskDGRLSPIDERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQ 763
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALE---EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER 767
|
490
....*....|..
gi 442626163 764 EISSLQSEIEDL 775
Cdd:COG1196 768 ELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
428-765 |
4.72e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 4.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 428 KLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQE---LAQTSSSIGGTPEHSPLRPRRHS 504
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEveqLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 505 EDKEEEMLQLME---KLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATkrrgdspSK 581
Cdd:TIGR02168 768 ERLEEAEEELAEaeaEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER-------RL 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 582 THLTEESPRLGKQRKCTEGEQSDASNSGDWL--ALNSELQRSQSQDEELTSLRQRVAELEEELKAAkEGRSLTPESRSKE 659
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELesELEALLNERASLEEALALLRSELEELSEELREL-ESKRSELRRELEE 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 660 LETSLEQMQRAYEDCE---DYWQTKLSEERQLfekERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGR--LSPIDERD 734
Cdd:TIGR02168 920 LREKLAQLELRLEGLEvriDNLQERLSEEYSL---TLEEAEALENKIEDDEEEARRRLKRLENKIKELGPvnLAAIEEYE 996
|
330 340 350
....*....|....*....|....*....|.
gi 442626163 735 MLEQQYSELEAEAAQLRsSSIQMLEEKAQEI 765
Cdd:TIGR02168 997 ELKERYDFLTAQKEDLT-EAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
493-775 |
1.99e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.00 E-value: 1.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 493 PEHSPLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATAT 572
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 573 KRRGDSPSKTHLTEEspRLGKQRKCTEGEQSDASNSGDWLALNSELQRSQSQ----DEELTSLRQRVAELEEEL------ 642
Cdd:TIGR02168 748 RIAQLSKELTELEAE--IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEElkalREALDELRAELTLLNEEAanlrer 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 643 -------KAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYwQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVR 715
Cdd:TIGR02168 826 leslerrIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL-IEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 716 EYEEQFSK--------DGRLSPIDER--------DMLEQQYSE---LEAEAAQLRSSSIQMLEEKAQ-EISSLQSEIEDL 775
Cdd:TIGR02168 905 ELESKRSElrreleelREKLAQLELRleglevriDNLQERLSEeysLTLEEAEALENKIEDDEEEARrRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
317-778 |
1.77e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 317 KALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYRQQHEEnlkLRADNKAANQRVALLAVEVdERHASLEDNSKKQ 396
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEE---LELELEEAQAEEYELLAEL-ARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 397 VQQLEQRHAsmvreitlRMTNDRDHWTSMTGKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNI 476
Cdd:COG1196 311 RRELEERLE--------ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 477 KLNQELAQTSSSIGGTpEHSPLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQ 556
Cdd:COG1196 383 ELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 557 EKQEKQEDQESAATATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSD-------ASNSGDWLALNSELQRSQSQDEEL- 628
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkaalllAGLRGLAGAVAVLIGVEAAYEAALe 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 629 -----------TSLRQRVAELEEELKAAKEGR----SLTPESRSKELETSLEQMQRAYE----DCEDYWQTKLSEERQLF 689
Cdd:COG1196 542 aalaaalqnivVEDDEVAAAAIEYLKAAKAGRatflPLDKIRARAALAAALARGAIGAAvdlvASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 690 EKERQIYEDEQHESDKKFTELMEKVREyEEQFSKDGRLSPIDERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQEISSLQ 769
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLRE-VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
....*....
gi 442626163 770 SEIEDLRQR 778
Cdd:COG1196 701 AEEEEEREL 709
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
427-784 |
5.95e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 5.95e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 427 GKLEAQLKSLEQEEirLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIggtpehsplrprrhSED 506
Cdd:TIGR02169 221 REYEGYELLKEKEA--LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI--------------KDL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 507 KEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESL-----NVELIRSKTKAKkqekqekqedqesaatatkrrgdspsK 581
Cdd:TIGR02169 285 GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAeerlaKLEAEIDKLLAE--------------------------I 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 582 THLTEESPRLGKQRKctegeqsdasnsgdwlALNSELQRSQsqdEELTSLRQRVAELEEELKAAKEgrsltpesRSKELE 661
Cdd:TIGR02169 339 EELEREIEEERKRRD----------------KLTEEYAELK---EELEDLRAELEEVDKEFAETRD--------ELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 662 TSLEQMQRAYEDCEDYWQTKLSEERQLFEKERQIY------EDEQHESDKKFTELMEKVREYEEQFSkdgrlSPIDERDM 735
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNaaiagiEAKINELEEEKEDKALEIKKQEWKLE-----QLAADLSK 466
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 442626163 736 LEQQYSELEAEAAQLRSssiqmleekaqEISSLQSEIEDLRQRLGESVE 784
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEK-----------ELSKLQRELAEAEAQARASEE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
613-789 |
7.89e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 7.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 613 ALNSELQRSQSQDEEL----TSLRQRVAELEEELKAAKEGRSlTPESRSKELETSLEQMQRAYEdcedywqtKLSEERQL 688
Cdd:TIGR02168 257 ELTAELQELEEKLEELrlevSELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLERQLE--------ELEAQLEE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 689 FEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRlspidERDMLEQQYSELEAEAAQLRSSSIQMLEEKAQ---EI 765
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEA-----ELEELESRLEELEEQLETLRSKVAQLELQIASlnnEI 402
|
170 180
....*....|....*....|....
gi 442626163 766 SSLQSEIEDLRQRLGESVEILTGA 789
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEEL 426
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
437-786 |
8.73e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 8.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 437 EQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTpehsplrpRRHSEDKEEEMLQLME 516
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL--------RKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 517 KLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKakKQEKQEKQEDQESAATATKRRGDspskthlteesprlgkqrk 596
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE--IEELEAQIEQLKEELKALREALD------------------- 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 597 ctegeqsdasnsgdwlALNSELQRsqsQDEELTSLRQRVAELEEElKAAKEGRSLTPESRSKELETSLEQMQRAYEDCED 676
Cdd:TIGR02168 807 ----------------ELRAELTL---LNEEAANLRERLESLERR-IAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 677 YwQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKdgrlspiderdmLEQQYSELEAEAAQLRsssiq 756
Cdd:TIGR02168 867 L-IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE------------LRRELEELREKLAQLE----- 928
|
330 340 350
....*....|....*....|....*....|
gi 442626163 757 mleekaQEISSLQSEIEDLRQRLGESVEIL 786
Cdd:TIGR02168 929 ------LRLEGLEVRIDNLQERLSEEYSLT 952
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
429-781 |
3.89e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 429 LEAQLKSLEQE-EI-----RLRTELElvrtentELESEQQKAHIQitelleqniKLNQELAQTSSSIggtpehsplrprr 502
Cdd:COG1196 198 LERQLEPLERQaEKaeryrELKEELK-------ELEAELLLLKLR---------ELEAELEELEAEL------------- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 503 hsEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKqekqedqesaatatkrrgdspSKT 582
Cdd:COG1196 249 --EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ---------------------DIA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 583 HLTEESPRLGKQRkctegEQSDAsnsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELET 662
Cdd:COG1196 306 RLEERRRELEERL-----EELEE-------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 663 SLEQMQRAYEDcedyWQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDMLEQQYSE 742
Cdd:COG1196 374 LAEAEEELEEL----AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
330 340 350
....*....|....*....|....*....|....*....
gi 442626163 743 LEAEAAQLRSSSIQMLEEKAQEISSLQSEIEDLRQRLGE 781
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
354-726 |
8.45e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 8.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 354 YRQQHEENLKLRADNKAANQRVALLAVEVDERHASLEDNSKKQVQQLEQRHAsmVREITLRMTNDRdhWTSMTGKLEA-- 431
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAE--LRELELALLVLR--LEELREELEElq 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 432 -QLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTPEhSPLRPRRHSEDKEEE 510
Cdd:TIGR02168 246 eELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE-RLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 511 MLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKqekqekqedqesaatatkrrgdspSKTHLTEESPR 590
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE------------------------LESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 591 LGKQRKctegEQSDASNSGDwlALNSELQRSQSQDEELTSLRQR-VAELEEELKAAKEGRSLTPESRSKELETSLEQMQR 669
Cdd:TIGR02168 381 LETLRS----KVAQLELQIA--SLNNEIERLEARLERLEDRRERlQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 442626163 670 AYEDCEDYWQTKLSEERQLFEKERQIYEDEQHESDKKftELMEKVREYEEQFSKDGR 726
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARL--DSLERLQENLEGFSEGVK 509
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-672 |
5.92e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 5.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 352 LAYRQQHEENLKLRADNKAANQRVALLAVEVDERHASLEDNsKKQVQQLEQRhasmvreitlrmtndrdhwtsmtgkLEA 431
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL-RLELEELELE-------------------------LEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 432 QLKS---LEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIggtpehsplrprrhsEDKE 508
Cdd:COG1196 286 AQAEeyeLLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL---------------EEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 509 EEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRgdspskTHLTEES 588
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE------RLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 589 PRLGKQRKCTEGEQSDAsnsgdwLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRS--LTPESRSKELETSLEQ 666
Cdd:COG1196 425 ELEEALAELEEEEEEEE------EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAelLEELAEAAARLLLLLE 498
|
....*.
gi 442626163 667 MQRAYE 672
Cdd:COG1196 499 AEADYE 504
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
333-781 |
6.04e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 6.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 333 SNMLRALAALQATELGNYRLAYRQQHEENLKLRADN-KAANQRVALLAVEVDERHASLEdnskkQVQQLEQRHASMVREI 411
Cdd:COG4717 37 STLLAFIRAMLLERLEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQE-----ELEELEEELEELEAEL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 412 TlRMTNDRDHWtsmtgKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQkahiQITELLEQNIKLNQELAQTSSSIGg 491
Cdd:COG4717 112 E-ELREELEKL-----EKLLQLLPLYQELEALEAELAELPERLEELEERLE----ELRELEEELEELEAELAELQEELE- 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 492 tpehspLRPRRHSEDKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEK-QEDQESAAT 570
Cdd:COG4717 181 ------ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlKEARLLLLI 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 571 ATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSDAsnsgdWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRS 650
Cdd:COG4717 255 AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALL-----FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 651 LTPESRSKELETSLEQMQRAYEDCEDYWQTKLSEERQLFEKER-QIYEDEQHESDKKFTELMEKVREYEEqfsKDGRLSP 729
Cdd:COG4717 330 LPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIaALLAEAGVEDEEELRAALEQAEEYQE---LKEELEE 406
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 442626163 730 IDERdmLEQQYSELEAEAAQLRSSSI-QMLEEKAQEISSLQSEIEDLRQRLGE 781
Cdd:COG4717 407 LEEQ--LEELLGELEELLEALDEEELeEELEELEEELEELEEELEELREELAE 457
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
428-781 |
9.29e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 9.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 428 KLEAQLKSLEQEEIRlrTELELVRTENTELESEqqkahiqITELLEQNIKLNQELAQTSSSIGGTPEHSPLRPRRHSEDK 507
Cdd:PRK03918 376 RLKKRLTGLTPEKLE--KELEELEKAKEEIEEE-------ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 508 EEEMLQLMEKLAAlqmENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSKTHLTEE 587
Cdd:PRK03918 447 EEHRKELLEEYTA---ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKK 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 588 SPRLGKQRKCTEGEQSDASNsgdwlaLNSELQRSQSQDEELTSLRQRVAELEEELKAA-KEGRSLTPESrSKELETSLEQ 666
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKS------LKKELEKLEELKKKLAELEKKLDELEEELAELlKELEELGFES-VEELEERLKE 596
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 667 MQRAYEDcedYWQTKLSE-ERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDMLEQQYSELEA 745
Cdd:PRK03918 597 LEPFYNE---YLELKDAEkELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSR 673
|
330 340 350
....*....|....*....|....*....|....*.
gi 442626163 746 EAAQLRsSSIQMLEEKAQEISSLqseIEDLRQRLGE 781
Cdd:PRK03918 674 ELAGLR-AELEELEKRREEIKKT---LEKLKEELEE 705
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
623-734 |
1.19e-05 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 49.69 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 623 SQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYWQtklsEERQLFEKERQIYEdEQHE 702
Cdd:COG0542 408 SKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWE----AEKELIEEIQELKE-ELEQ 482
|
90 100 110
....*....|....*....|....*....|....
gi 442626163 703 SDKKFTELMEKVREYEEQFSKDGRLSP--IDERD 734
Cdd:COG0542 483 RYGKIPELEKELAELEEELAELAPLLReeVTEED 516
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
593-781 |
2.54e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 593 KQRKCTEGEQSDASNSGDWLALNSELQRSQsqdEELTSLRQRVAELEEELKAAKEGRSlTPESRSKELETSLEQMQRAYE 672
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLK---ERLEELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLEEALN 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 673 DCEDywqtKLSEER-QLFEKERQIYEDEQHESDKKFTELMEKV--REYEEQFSKDGRLSPIDERDMLEQQYSELEAEAAQ 749
Cdd:TIGR02169 783 DLEA----RLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLnrLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
|
170 180 190
....*....|....*....|....*....|..
gi 442626163 750 LRSSsiqmLEEKAQEISSLQSEIEDLRQRLGE 781
Cdd:TIGR02169 859 LNGK----KEELEEELEELEAALRDLESRLGD 886
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
305-804 |
3.17e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 3.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 305 DEEEEVNLQQLTKALEEELRGIDGDHEqsnMLRALAALQATELGNYRLAYRQQHEENLKLRADNKAANQRVALLAVEV-- 382
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELE---SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIer 404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 383 -DERHASLEDNSKKQVQQLEQRHASMVREITLRMTNDRDHWTSMTGKLEAQLKSLEQEEIRLRTELELVRTENTELESE- 460
Cdd:TIGR02168 405 lEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREl 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 461 -QQKAHIQITELLEQNIKLNQE--LAQTSSSIGGTPEHSPLRPRRHSEDKEEEMLQ--LMEKLAALQMENAQLRDKTDEL 535
Cdd:TIGR02168 485 aQLQARLDSLERLQENLEGFSEgvKALLKNQSGLSGILGVLSELISVDEGYEAAIEaaLGGRLQAVVVENLNAAKKAIAF 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 536 TIEIESLNV---ELIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSKTHLTEeSPRLG------------KQRKCTEG 600
Cdd:TIGR02168 565 LKQNELGRVtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL-SYLLGgvlvvddldnalELAKKLRP 643
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 601 EQSDASNSGDWL------------ALNSELQRSQsqdeELTSLRQRVAELEEELKAAK--------------------EG 648
Cdd:TIGR02168 644 GYRIVTLDGDLVrpggvitggsakTNSSILERRR----EIEELEEKIEELEEKIAELEkalaelrkeleeleeeleqlRK 719
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 649 RSLTPESRSKELETSLEQMQRAYEDCEDYWQtKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKD-GRL 727
Cdd:TIGR02168 720 ELEELSRQISALRKDLARLEAEVEQLEERIA-QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLkEEL 798
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 728 SPIDER-DMLEQQYSELEAEAAQLRSSsiqmLEEKAQEISSLQSEIEDLRQRLG---ESVEILTGACELTSESVAQLSAE 803
Cdd:TIGR02168 799 KALREAlDELRAELTLLNEEAANLRER----LESLERRIAATERRLEDLEEQIEelsEDIESLAAEIEELEELIEELESE 874
|
.
gi 442626163 804 A 804
Cdd:TIGR02168 875 L 875
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-703 |
3.50e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 356 QQHEENLKLRADNKAANQRVALLAvEVDERHASLEDnSKKQVQQLEQRHASmvREITLRMTNDR--DHWTSMTGKLEAQL 433
Cdd:TIGR02169 221 REYEGYELLKEKEALERQKEAIER-QLASLEEELEK-LTEEISELEKRLEE--IEQLLEELNKKikDLGEEEQLRVKEKI 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 434 KSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQtsssiggtpehspLRPRRHS-----EDKE 508
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE-------------ERKRRDKlteeyAELK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 509 EEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTkakkqekqekqedqesaatatkrrgdspskthlteES 588
Cdd:TIGR02169 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR-----------------------------------EL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 589 PRLGKQRKCTEGEQSDASNsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSltpesrskELETSLEQMQ 668
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNA-----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS--------KYEQELYDLK 475
|
330 340 350
....*....|....*....|....*....|....*
gi 442626163 669 RAYEDCEDYwQTKLSEERQLFEKERQIYEDEQHES 703
Cdd:TIGR02169 476 EEYDRVEKE-LSKLQRELAEAEAQARASEERVRGG 509
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
428-775 |
6.83e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 6.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 428 KLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTpehsplrpRRHSEDK 507
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQN--------NKKIKEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 508 EEEMLQLMEKLAALQMENAQlrDKTDELTIEIESLNVELIRSKTKakkqekqekQEDQESAATATKRRGDSPSKTHLTEE 587
Cdd:TIGR04523 287 EKQLNQLKSEISDLNNQKEQ--DWNKELKSELKNQEKKLEEIQNQ---------ISQNNKIISQLNEQISQLKKELTNSE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 588 SPRLGKQRKCTEGEQsdasnsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEgrsltpesRSKELETSLEQM 667
Cdd:TIGR04523 356 SENSEKQRELEEKQN----------EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK--------LNQQKDEQIKKL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 668 QRAYEDCEDYwQTKLSEERQLFEKERQIYEDEQHESDKKFTELmEKVREYEEQFSKDGRLSPIDERDMLEQQYSELEAEA 747
Cdd:TIGR04523 418 QQEKELLEKE-IERLKETIIKNNSEIKDLTNQDSVKELIIKNL-DNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKE 495
|
330 340 350
....*....|....*....|....*....|....
gi 442626163 748 AQLRS--SSIQMLEEK----AQEISSLQSEIEDL 775
Cdd:TIGR04523 496 KELKKlnEEKKELEEKvkdlTKKISSLKEKIEKL 529
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
619-778 |
1.09e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 619 QRSQSQDEELTSLRQRVAELEEELKAAkegrsltpESRSKELETSLEQMQRAYedcedyWQTKLSEERQLfekERQIyed 698
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERL--------EARLDALREELDELEAQI------RGNGGDRLEQL---EREI--- 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 699 EQHESDKKftELMEKVREYEEQFSKDGRLSPIDERDMLEQQ---------YSELEAEAAQLRSSSIQMLEEKAQEISSLQ 769
Cdd:COG4913 348 ERLERELE--ERERRRARLEALLAALGLPLPASAEEFAALRaeaaalleaLEEELEALEEALAEAEAALRDLRRELRELE 425
|
....*....
gi 442626163 770 SEIEDLRQR 778
Cdd:COG4913 426 AEIASLERR 434
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
309-773 |
1.81e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.87 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 309 EVNLQQLTKALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYrqqhEENLKLRADNKAANQ-RVALLAVEVDERHA 387
Cdd:pfam05483 316 EEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSL----EELLRTEQQRLEKNEdQLKIITMELQKKSS 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 388 SLEDNSK----KQVQqLEQRHASMVREITLRMTND---------RDHWTSMTGKLEAQLKSLEQEEIR------------ 442
Cdd:pfam05483 392 ELEEMTKfknnKEVE-LEELKKILAEDEKLLDEKKqfekiaeelKGKEQELIFLLQAREKEIHDLEIQltaiktseehyl 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 443 -----LRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIggtpehsplrprRHSEDKEEEMLQLMEK 517
Cdd:pfam05483 471 kevedLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDI------------INCKKQEERMLKQIEN 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 518 LAALQMenaQLRDktdeltiEIESLNVELIRSKTKAKKQEKQekqedqesaataTKRRGDSPSKTHLTEESPRLGKQRKC 597
Cdd:pfam05483 539 LEEKEM---NLRD-------ELESVREEFIQKGDEVKCKLDK------------SEENARSIEYEVLKKEKQMKILENKC 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 598 TEGEQSDASNSGDWLALNSE----LQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETSleqmqrayed 673
Cdd:pfam05483 597 NNLKKQIENKNKNIEELHQEnkalKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK---------- 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 674 cedywqtKLSEERQLFEKER-QIYEDE----QHESDK----KFTELMEKVREYEEQFSKdgrlsPIDERDMLEQQYSELE 744
Cdd:pfam05483 667 -------KISEEKLLEEVEKaKAIADEavklQKEIDKrcqhKIAEMVALMEKHKHQYDK-----IIEERDSELGLYKNKE 734
|
490 500
....*....|....*....|....*....
gi 442626163 745 AEAAQLRSSSIQMLEEKAQEISSLQSEIE 773
Cdd:pfam05483 735 QEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
622-783 |
2.06e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 622 QSQDEELTSLRQRVAELEEELKAAKEGRSLTpESRSKELETSLEQMQRAYEDCE----------DYWQTKLSE-----ER 686
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAAL-EARLEAAKTELEDLEKEIKRLEleieeveariKKYEEQLGNvrnnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 687 QLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKdgrlspiderdmLEQQYSELEAEAAQLRSSSIQMLEEKAQEIS 766
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAE------------LEAELAELEAELEEKKAELDEELAELEAELE 159
|
170
....*....|....*..
gi 442626163 767 SLQSEIEDLRQRLGESV 783
Cdd:COG1579 160 ELEAEREELAAKIPPEL 176
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
631-804 |
2.20e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 631 LRQRVAELEEELKAAKEGRSLTPESRSKELETSLEQMQRAYEDCEDYWQT---------KLSEERQLFEKERQIYEDEQH 701
Cdd:COG1196 198 LERQLEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAEleeleaeleELEAELAELEAELEELRLELE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 702 ESDKKFTELMEKVREYEEQFSK-DGRLSPIDERDM-LEQQYSELEAEAAQLRSSSIQM---LEEKAQEISSLQSEIEDLR 776
Cdd:COG1196 278 ELELELEEAQAEEYELLAELARlEQDIARLEERRReLEERLEELEEELAELEEELEELeeeLEELEEELEEAEEELEEAE 357
|
170 180
....*....|....*....|....*...
gi 442626163 777 QRLGESVEILTGACELTSESVAQLSAEA 804
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELA 385
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
607-786 |
3.48e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.76 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 607 NSGDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAkegrsltpESRSKELETSLEQMQRAyEDCEDYWQTKLSEER 686
Cdd:COG4717 69 NLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL--------EAELEELREELEKLEKL-LQLLPLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 687 QLFEKERQIyedeqhesdkkfTELMEKVREYEEqfskdgrlspiderdmLEQQYSELEAEAAQLRSSSIQMLE----EKA 762
Cdd:COG4717 140 ELAELPERL------------EELEERLEELRE----------------LEEELEELEAELAELQEELEELLEqlslATE 191
|
170 180
....*....|....*....|....
gi 442626163 763 QEISSLQSEIEDLRQRLGESVEIL 786
Cdd:COG4717 192 EELQDLAEELEELQQRLAELEEEL 215
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
654-807 |
3.99e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 654 ESRSKELETSLEQM-QRAYEDCEDYWQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKdgrlspidE 732
Cdd:PRK12704 30 EAKIKEAEEEAKRIlEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDR--------K 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442626163 733 RDMLEQQYSELEAEAAQlrsssiqmLEEKAQEISSLQSEIEDLRQrlgESVEILtgaceltsESVAQLSAEAGKS 807
Cdd:PRK12704 102 LELLEKREEELEKKEKE--------LEQKQQELEKKEEELEELIE---EQLQEL--------ERISGLTAEEAKE 157
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
300-542 |
4.56e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 300 HVLGFDeeeevNLQQLtKALEEELRGIDgdheqsnmlRALAALQAtelgnyRLAYRQQHEENLKLRADnkAANQRVALLA 379
Cdd:COG4913 602 YVLGFD-----NRAKL-AALEAELAELE---------EELAEAEE------RLEALEAELDALQERRE--ALQRLAEYSW 658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 380 VEVDerHASLEdnskKQVQQLEQRHAsmvreitlRMTNDRDHWTsmtgKLEAQLKSLEQEEIRLRTELELVRTENTELES 459
Cdd:COG4913 659 DEID--VASAE----REIAELEAELE--------RLDASSDDLA----ALEEQLEELEAELEELEEELDELKGEIGRLEK 720
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 460 EQQKAhiqitellEQNIKLNQELAQTSSSIGGTPEHSPLRPRRHSEDKEEEMLQLMEKLAAlqmENAQLRDKTDELTIEI 539
Cdd:COG4913 721 ELEQA--------EEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEE---RIDALRARLNRAEEEL 789
|
...
gi 442626163 540 ESL 542
Cdd:COG4913 790 ERA 792
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
591-784 |
4.67e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 591 LGKQRKCT-EGEQSDASNS--GDWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSltpesrskELETSLEQM 667
Cdd:TIGR02169 636 MGKYRMVTlEGELFEKSGAmtGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELR--------RIENRLDEL 707
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 668 QRAYEDCEdywqtklsEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEqfskdGRLSPIDERDMLEQQYSELEAEA 747
Cdd:TIGR02169 708 SQELSDAS--------RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ-----EIENVKSELKELEARIEELEEDL 774
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 442626163 748 AQLRSS----SIQMLEEKAQEISSLQSEIEDLRQRLGESVE 784
Cdd:TIGR02169 775 HKLEEAlndlEARLSHSRIPEIQAELSKLEEEVSRIEARLR 815
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
432-779 |
6.54e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 6.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 432 QLKSLEQEEIRLRTELELVRTENTELESEQQKahiqITELLEQNIKLNQELAQTSSSIGGTpehsplrpRRHSEDKEEEM 511
Cdd:PRK03918 208 EINEISSELPELREELEKLEKEVKELEELKEE----IEELEKELESLEGSKRKLEEKIREL--------EERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 512 LQLMEKLAALQmENAQLRDKTDELTIEIESLNVELIR-SKTKAKKQEKQEKQEDQESAATATKRRgdspskthLTEESPR 590
Cdd:PRK03918 276 EELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREiEKRLSRLEEEINGIEERIKELEEKEER--------LEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 591 LGKQRKCTEGEQSDASNSGDWLALNSELQRSQSQ---------DEELTSLRQRVAELEEELKAAKEGRSlTPESRSKELE 661
Cdd:PRK03918 347 LKELEKRLEELEERHELYEEAKAKKEELERLKKRltgltpeklEKELEELEKAKEEIEEEISKITARIG-ELKKEIKELK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 662 TSLEQMQRAYEDCEdYWQTKLSEERQL-----FEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPidERDML 736
Cdd:PRK03918 426 KAIEELKKAKGKCP-VCGRELTEEHRKelleeYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIK--LKELA 502
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 442626163 737 EQqyseLEAEAAQLRSSSIQMLEEKAQEISSLQSEIEDLRQRL 779
Cdd:PRK03918 503 EQ----LKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEI 541
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
305-803 |
9.57e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 9.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 305 DEEEEVNLQQLTKALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYRQQHEENL-------KLRADNKAANQRVAL 377
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELEtleaeieDLRETIAETEREREE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 378 LAVEVDERHASLEDNSKK--------------------QVQQLEQRHASMVREItlrmtndRDHWTSMtGKLEAQLKSLE 437
Cdd:PRK02224 277 LAEEVRDLRERLEELEEErddllaeaglddadaeaveaRREELEDRDEELRDRL-------EECRVAA-QAHNEEAESLR 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 438 QEEIRLRTELELVRTENTELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTPEhSPLRPRRHSEDKEEEMLQLMEK 517
Cdd:PRK02224 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV-DLGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 518 LAALQM----------ENAQLR------------------DKTDELTIEIESLNVELirSKTKAKKQEKQEKQEDQESAA 569
Cdd:PRK02224 428 EAELEAtlrtarerveEAEALLeagkcpecgqpvegsphvETIEEDRERVEELEAEL--EDLEEEVEEVEERLERAEDLV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 570 TATKRRGDSPSKTHLTEEspRLGKQRKCTEGEQSDASNSGDWLA-LNSELQ----RSQSQDEELTSLRQRVAELEEELKA 644
Cdd:PRK02224 506 EAEDRIERLEERREDLEE--LIAERRETIEEKRERAEELRERAAeLEAEAEekreAAAEAEEEAEEAREEVAELNSKLAE 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 645 AKEGRsltpeSRSKELETSLEqmqrAYEDCEDYWQTkLSEERqlfeKERQIYEDEQHEsdkKFTELMEKVREYEEQFSKD 724
Cdd:PRK02224 584 LKERI-----ESLERIRTLLA----AIADAEDEIER-LREKR----EALAELNDERRE---RLAEKRERKRELEAEFDEA 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 725 GRLSPIDERDMLEQQYSELEAEAAQLRS------SSIQMLEEKAQEISSLQSEIEDLRQRLgESVEILTGACELTSESVA 798
Cdd:PRK02224 647 RIEEAREDKERAEEYLEQVEEKLDELREerddlqAEIGAVENELEELEELRERREALENRV-EALEALYDEAEELESMYG 725
|
....*
gi 442626163 799 QLSAE 803
Cdd:PRK02224 726 DLRAE 730
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
622-784 |
1.25e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 622 QSQDEELTSLRQRVAELEEELKAAKEgrsltpesRSKELETSLEQMQRAYEDcedywqTKLSEERQLFEKERQIYEDEQH 701
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRK--------ELEEAEAALEEFRQKNGL------VDLSEEAKLLLQQLSELESQLA 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 702 ESDKKFTELMEKVREYEEQFSKDGRLSPIDERD----MLEQQYSELEAEAAQLRSSsiqmLEEKAQEISSLQSEIEDLRQ 777
Cdd:COG3206 230 EARAELAEAEARLAALRAQLGSGPDALPELLQSpviqQLRAQLAELEAELAELSAR----YTPNHPDVIALRAQIAALRA 305
|
....*..
gi 442626163 778 RLGESVE 784
Cdd:COG3206 306 QLQQEAQ 312
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
583-750 |
1.34e-03 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 42.74 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 583 HLTEESPRLGKQRKCTEGEQSDASnsgdwlaLNSELQRSQSQDEEltslrQRVAELEEELKAAKEGRSLtpesrskeLET 662
Cdd:pfam05911 685 RLKEEFEQLKSEKENLEVELASCT-------ENLESTKSQLQESE-----QLIAELRSELASLKESNSL--------AET 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 663 SLEQMQRAYEDCE---DYWQTKLSEERQLFEKerqiYEDEQHESDKKFTELMEKVREYEEQF----SKDGRLSPIDERDM 735
Cdd:pfam05911 745 QLKCMAESYEDLEtrlTELEAELNELRQKFEA----LEVELEEEKNCHEELEAKCLELQEQLerneKKESSNCDADQEDK 820
|
170
....*....|....*
gi 442626163 736 LEQQYSELEAEAAQL 750
Cdd:pfam05911 821 KLQQEKEITAASEKL 835
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
502-786 |
1.42e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 502 RHSEDKEEEMLQLMEklaalqmENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSK 581
Cdd:pfam02463 166 RLKRKKKEALKKLIE-------ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 582 THLTEESPRLGKQRKctEGEQSDASNSGDWLALNSELQRSQSQDEELTSLRQ-RVAELEEELKAAKEGRSLTPESRSKEL 660
Cdd:pfam02463 239 IDLLQELLRDEQEEI--ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELkLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 661 ETSLEQMQRAYEDCEDYWQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQFSKDGRLSPIDERDMLEQQY 740
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 396
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 442626163 741 SELEAEAAQLRSSSIQMLEEKAQEISSLQSEIEDLRQRLGESVEIL 786
Cdd:pfam02463 397 LELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELK 442
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
338-548 |
1.62e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 42.73 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 338 ALAALQATELGNyrlayrQQHEENLKLRADNKAANQRVALLAVE-----VDERHASLEdnSKKQVQQLEQRHASMVREIT 412
Cdd:PRK10929 14 SWGAYAATAPDE------KQITQELEQAKAAKTPAQAEIVEALQsalnwLEERKGSLE--RAKQYQQVIDNFPKLSAELR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 413 LRMTNDRDHWTSMTGKLEAQlkSLEQEEIRLRTEL-ELVRtentELESEQQKAhIQITELL----EQNIKLNQELAQTSS 487
Cdd:PRK10929 86 QQLNNERDEPRSVPPNMSTD--ALEQEILQVSSQLlEKSR----QAQQEQDRA-REISDSLsqlpQQQTEARRQLNEIER 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442626163 488 SIGGTPehSPLRPRRHSedkeeemlqlmeKLAALQMENAQLRDKTDELTIEIESLN--VELIR 548
Cdd:PRK10929 159 RLQTLG--TPNTPLAQA------------QLTALQAESAALKALVDELELAQLSANnrQELAR 207
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
294-474 |
1.64e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 294 NTRNLLHVLGFDEEEEVNLQQLTKA---LEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYRQQHEENLKLRADNKA 370
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAeeeLAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 371 ANQRVALLAVEVDERHASLEDNSKkQVQQLEQRHASMVREITlRMTNDRDHWT--------------SMTGKLEAQLKSL 436
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSE-DIESLAAEIEELEELIE-ELESELEALLnerasleealallrSELEELSEELREL 906
|
170 180 190
....*....|....*....|....*....|....*...
gi 442626163 437 EQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQ 474
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQER 944
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
610-781 |
1.94e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 610 DWLALNSELQRSQSQDEELTSLRQRVAELEEELKAAKE-------------GRSLTPESRSKELETSLEQMQRAYEDCED 676
Cdd:COG4913 662 DVASAEREIAELEAELERLDASSDDLAALEEQLEELEAeleeleeeldelkGEIGRLEKELEQAEEELDELQDRLEAAED 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 677 Y---WQTKLSEER-------QLFEKERQIYEDEQHESDKK----FTELMEKVREYEEQF---SKDGRLSPIDERD---ML 736
Cdd:COG4913 742 LarlELRALLEERfaaalgdAVERELRENLEERIDALRARlnraEEELERAMRAFNREWpaeTADLDADLESLPEylaLL 821
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 442626163 737 EQQYS----ELEAEAAQLRSSsiQMLEEKAQEISSLQSEIEDLRQRLGE 781
Cdd:COG4913 822 DRLEEdglpEYEERFKELLNE--NSIEFVADLLSKLRRAIREIKERIDP 868
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
306-717 |
2.65e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 306 EEEEVNLQQLTKALEEELRGIDGDHEQSNMLRALAALQAT-ELGNYRL-AYRQQHEENLKLRADNKAANQRVALLAVEVD 383
Cdd:COG4717 101 EEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAElAELPERLeELEERLEELRELEEELEELEAELAELQEELE 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 384 ERHASLEDNSKKQVQQLEQRHASMVREITlrmtndrdhwtsmtgKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQK 463
Cdd:COG4717 181 ELLEQLSLATEEELQDLAEELEELQQRLA---------------ELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 464 AHIQ------------------------------------ITELLEQNIKLNQELAQTSSSIGGTPEHSPLRPRRHSEDK 507
Cdd:COG4717 246 KEARlllliaaallallglggsllsliltiagvlflvlglLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELL 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 508 E----------EEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGD 577
Cdd:COG4717 326 AalglppdlspEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELE 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 578 SpSKTHLTEESPRLGKQRKCTEGEQSDAsnsgdwlALNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTpesrs 657
Cdd:COG4717 406 E-LEEQLEELLGELEELLEALDEEELEE-------ELEELEEELEELEEELEELREELAELEAELEQLEEDGELA----- 472
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 658 kELETSLEQMQRAYEDCEDYWQTkLSEERQLFEKERQIYEDEqhesdkKFTELMEKVREY 717
Cdd:COG4717 473 -ELLQELEELKAELRELAEEWAA-LKLALELLEEAREEYREE------RLPPVLERASEY 524
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
626-764 |
2.79e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 626 EELTSLRQrvaELEEELKaakegrsltpeSRSKELETSLEQMQRAYEDCEDYWQTkLSEERQLFEKERQIYEDEQHESDK 705
Cdd:PRK12704 64 EEIHKLRN---EFEKELR-----------ERRNELQKLEKRLLQKEENLDRKLEL-LEKREEELEKKEKELEQKQQELEK 128
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 706 KFTELMEKVREYEEQFSKDGRLSPIDERDM-LEQQYSELEAEAAQLrsssIQMLEEKAQE 764
Cdd:PRK12704 129 KEEELEELIEEQLQELERISGLTAEEAKEIlLEKVEEEARHEAAVL----IKEIEEEAKE 184
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
375-607 |
2.83e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 375 VALLAVEVDERHASLEDNSKKQVQQLEQRHASMVREITlRMTNDRDhwtsmtgKLEAQLKSLEQEEIRLRTELELVRTEN 454
Cdd:COG4942 7 LALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELA-ALKKEEK-------ALLKQLAALERRIAALARRIRALEQEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 455 TELESEQQKAHIQITELLEQNIKLNQELAQTSSSIGGTPEHSPLRPRRHSEDKEE--EMLQLM--------EKLAALQME 524
Cdd:COG4942 79 AALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDavRRLQYLkylaparrEQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 525 NAQLRDKTDELTIEIESLNVELIRSKTKAKKQEKQEKQEDQESAATATKRRGDSPSKTHLTEESPRLGKQRKCTEGEQSD 604
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
...
gi 442626163 605 ASN 607
Cdd:COG4942 239 AAE 241
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
614-781 |
3.45e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 614 LNSELQRSQSQDEELTSLRQRVAELEEELKAAKEGRSLTPESRSKELETS-LEQMQRAYEDCEDYWQTKLSE-ERQLFEK 691
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIkLSEFYEEYLDELREIEKRLSRlEEEINGI 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 692 ERQIYEDEQHES------------DKKFTELMEKVREYEEQFSKDGRLSPIDER------DMLEQQYSELEAEAAQLRSS 753
Cdd:PRK03918 327 EERIKELEEKEErleelkkklkelEKRLEELEERHELYEEAKAKKEELERLKKRltgltpEKLEKELEELEKAKEEIEEE 406
|
170 180
....*....|....*....|....*...
gi 442626163 754 siqmLEEKAQEISSLQSEIEDLRQRLGE 781
Cdd:PRK03918 407 ----ISKITARIGELKKEIKELKKAIEE 430
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
622-811 |
4.04e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 622 QSQDEELTSLRQRVAELEEELKAAKEGRSlTPESRSKELE--TSLEqmqrayEDCEDYWQTKLSEeRQLFEKERQIYEDE 699
Cdd:PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIK-ELEQEIERLEpwGNFD------LDLSLLLGFKYVS-VFVGTVPEDKLEEL 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 700 QHESDKKFTELMEKVREYeeqfskdGRLSPIDERDMLEQQYSEL---EAEAAQLRSSSI--QMLEEKAQEISSLQSEIED 774
Cdd:PRK05771 161 KLESDVENVEYISTDKGY-------VYVVVVVLKELSDEVEEELkklGFERLELEEEGTpsELIREIKEELEEIEKERES 233
|
170 180 190
....*....|....*....|....*....|....*..
gi 442626163 775 LRQRLGESVEILTgacELTSESVAQLSAEAGKSPASS 811
Cdd:PRK05771 234 LLEELKELAKKYL---EELLALYEYLEIELERAEALS 267
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
614-795 |
4.30e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 614 LNSELQRSQSQD--EELTSLRQRVAELEEELKAAKEGRSLTPESRSK------ELETSLEQMQRAYEDCEDYWQTKLSEE 685
Cdd:PRK02224 192 LKAQIEEKEEKDlhERLNGLESELAELDEEIERYEEQREQARETRDEadevleEHEERREELETLEAEIEDLRETIAETE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 686 RqlfekERQIYEDEQHESDKKFTELMEkvrEYEEQFSKDGRLSPIDERdmLEQQYSELEAEAAQLRSSsiqmLEEKAQEI 765
Cdd:PRK02224 272 R-----EREELAEEVRDLRERLEELEE---ERDDLLAEAGLDDADAEA--VEARREELEDRDEELRDR----LEECRVAA 337
|
170 180 190
....*....|....*....|....*....|....
gi 442626163 766 SSLQSEIEDLRQRL----GESVEILTGACELTSE 795
Cdd:PRK02224 338 QAHNEEAESLREDAddleERAEELREEAAELESE 371
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
613-786 |
4.93e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 613 ALNSELQRSQSQDEELTSLRQRVAELEEELKaakEGRSLTPESRSK--ELETSLEQMQRAYEDCEDYWQTKLSEE---RQ 687
Cdd:PRK03918 180 RLEKFIKRTENIEELIKEKEKELEEVLREIN---EISSELPELREEleKLEKEVKELEELKEEIEELEKELESLEgskRK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 688 LFEKERQIyEDEQHESDKKFTELMEKVREYEE-QFSKDGRLSPIDERDMLEQQYSELEAEAAQLRS---------SSIQM 757
Cdd:PRK03918 257 LEEKIREL-EERIEELKKEIEELEEKVKELKElKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEeingieeriKELEE 335
|
170 180
....*....|....*....|....*....
gi 442626163 758 LEEKAQEISSLQSEIEDLRQRLGESVEIL 786
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEELEERHELY 364
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
428-546 |
6.10e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 6.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 428 KLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITELLEQ--NIKLNQELAQTSSSIGGTpehsplrpRRHSE 505
Cdd:COG1579 35 ELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgNVRNNKEYEALQKEIESL--------KRRIS 106
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 442626163 506 DKEEEMLQLMEKLAALQMENAQLRDKTDELTIEIESLNVEL 546
Cdd:COG1579 107 DLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL 147
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
313-471 |
6.24e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 313 QQLTKALEEELRGIDGDHEQSNMLRALAALQATELGNYRLAYRQQHEENlklradnkaANQRVALLAVEVDERHASLEdn 392
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGN---------GGDRLEQLEREIERLERELE-- 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442626163 393 skkQVQQLEQRHASMVREITLRMTNDRDHWTSMTGKLEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITEL 471
Cdd:COG4913 356 ---ERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
681-779 |
8.97e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.23 E-value: 8.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 681 KLSEERQlfEKERQIYEDEQHESDKKFTELMEKVREYEEQFskdGRLSpiDERDMLEQQYSELEAEAAQLRS------SS 754
Cdd:COG2433 384 ELIEKEL--PEEEPEAEREKEHEERELTEEEEEIRRLEEQV---ERLE--AEVEELEAELEEKDERIERLERelsearSE 456
|
90 100
....*....|....*....|....*
gi 442626163 755 IQMLEEKAQEISSLQSEIEDLRQRL 779
Cdd:COG2433 457 ERREIRKDREISRLDREIERLEREL 481
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
351-720 |
9.42e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 351 RLAYRQQHEENLK--LRADNKAANQRVALLAVEVDERHASLEDNSKKQvQQLEQRHASMVREITlrmtndrdhwtsmtgK 428
Cdd:TIGR02169 678 RLRERLEGLKRELssLQSELRRIENRLDELSQELSDASRKIGEIEKEI-EQLEQEEEKLKERLE---------------E 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 429 LEAQLKSLEQEEIRLRTELELVRTENTELESEQQKAHIQITElLEQNIKLN--QELAQTSSSIggTPEHSPLRPRRHSED 506
Cdd:TIGR02169 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND-LEARLSHSriPEIQAELSKL--EEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 507 KEEEMLQLMEKLAALQMENAQ-----LRDKTDELTIEIESLNVELIRSKTKAkkqekqekqedqesAATATKRRGDSPSK 581
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQeqridLKEQIKSIEKEIENLNGKKEELEEEL--------------EELEAALRDLESRL 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442626163 582 THLTEESPRLGKQRKCTEGEQSDasnsgdwlaLNSELQRSQSQDEELTS----LRQRVAELEEELKAAKEGRSLTPESRs 657
Cdd:TIGR02169 885 GDLKKERDELEAQLRELERKIEE---------LEAQIEKKRKRLSELKAkleaLEEELSEIEDPKGEDEEIPEEELSLE- 954
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442626163 658 kELETSLEQMQRAYEDCEDYwQTKLSEERQLFEKERQIYEDEQHESDKKFTELMEKVREYEEQ 720
Cdd:TIGR02169 955 -DVQAELQRVEEEIRALEPV-NMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| |
