|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
114-605 |
8.20e-62 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 227.40 E-value: 8.20e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 114 LQHQNTDLQRELGNLKRELELTNQKLGSSMHSIKTFWSPELKKERALRKEESAKYSLINDQLKLLSTENQKQAMLVRQLE 193
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 194 EELRLR-----MRQPNLEM---------------QQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARDESI 253
Cdd:pfam10174 81 DELRAQrdlnqLLQQDFTTspvdgedkfstpeltEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 254 KKLLEMLQAKGMGK------------------------------------------------------------------ 267
Cdd:pfam10174 161 KKLLEMLQSKGLPKksgeedwertrriaeaemqlghlevlldqkekenihlreelhrrnqlqpdpaktkalqtviemkdt 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 268 ------------EEERQMFQQMQAMAQKQ---------------------LDEFRLEIQRRDQEILAMAAKMKTLEEQHQ 314
Cdd:pfam10174 241 kisslernirdlEDEVQMLKTNGLLHTEDreeeikqmevykshskfmknkIDQLKQELSKKESELLALQTKLETLTNQNS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 315 DYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQ 394
Cdd:pfam10174 321 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQ 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 395 RKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADY 474
Cdd:pfam10174 401 KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 475 KIKLRAaeseveklqtrLERAVTERERLEIKLEASQSELGKSKAeleKATCEMGRSSADWESTKQRIARLELENERLKHD 554
Cdd:pfam10174 481 KEKVSA-----------LQPELTEKESSLIDLKEHASSLASSGL---KKDSKLKSLEIAVEQKKEECSKLENQLKKAHNA 546
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 442623018 555 LERSQVLTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQMERDD 605
Cdd:pfam10174 547 EEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKND 597
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
287-865 |
6.60e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.46 E-value: 6.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 287 EFRLEIQRRDQEILAMA-----AKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQG 361
Cdd:COG1196 217 ELKEELKELEAELLLLKlreleAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 362 TLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGD 441
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 442 KEKQMAQLRDQRDRAEHEKQEERDlherevadykiKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELE 521
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAA-----------QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 522 KATCEMGRSSADWESTKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQM 601
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 602 ERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLqsrcDTAEADRARLEVEAERSGLAAS 681
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL----DKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 682 KAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERvtyelERAH 761
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA-----ALLE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 762 AAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGRETRRLKEENERLREKLDKTLMELETIRGKSQ 841
Cdd:COG1196 677 AEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
570 580
....*....|....*....|....
gi 442623018 842 YESESFEKYKDKYEKIEMEVQNME 865
Cdd:COG1196 757 PEPPDLEELERELERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
372-1134 |
3.58e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 87.80 E-value: 3.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 372 LTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRD 451
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 452 QRDRAEHEKQEerdlHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSS 531
Cdd:TIGR02168 310 RLANLERQLEE----LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 532 ADWESTKQRIARLELENERLKHDLERSQVlttfgrttMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVE 611
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLED--------RRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 612 ILKEKLDKAlyasqklidekdtsNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLE--------VEAERSGLAASKA 683
Cdd:TIGR02168 458 RLEEALEEL--------------REELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkaLLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 684 R-EDLRKLQDESTRLQEACDRAALQ------LSRAKEC-------EDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSE 749
Cdd:TIGR02168 524 VlSELISVDEGYEAAIEAALGGRLQavvvenLNAAKKAiaflkqnELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 750 LERVTYELERAHAA-----------QTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGR--ETRRLK 816
Cdd:TIGR02168 604 AKDLVKFDPKLRKAlsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERrrEIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 817 EENERLREKLDKTLMELETIRgksqyesESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSEL 896
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELR-------KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 897 ERAHIEREKARDKHEKLLKEVDRLRLQQSSVSPG-DPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRL 975
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQiEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 976 AKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSggagaaphpqLEKHVQKLESDVKQL 1055
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL----------LRSELEELSEELREL 906
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1056 AMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTREenrKLRNGHQVPPVA-APPAGPSPAEFQAMQKEIQTLQQKLQE 1134
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEaEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
581-1134 |
6.32e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 6.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 581 RADKASAELRRTQAELRVTQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCD 660
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 661 TAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQ 740
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 741 GEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQ-DTDTFGRETRRLKEEN 819
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEeEEEALLELLAELLEEA 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 820 ERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERA 899
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 900 HiEREKARDKHEKLLKEVDRLRLQQSSVSPGDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKEL 979
Cdd:COG1196 553 V-EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 980 EKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSGgagaaphpQLEKHVQKLESDVKQLAMER 1059
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE--------LAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442623018 1060 EQLVLQLEKSQEILMNFQKELQNAEAELQKTREENRKLRNGHQVPPVAAPPAGPSPAEFQAMQKEIQTLQQKLQE 1134
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
290-1025 |
1.58e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 85.89 E-value: 1.58e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 290 LEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGtlqtvqER 369
Cdd:TIGR02169 216 LLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE------EQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 370 NRLTSELTELKDhmdikdrKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGaltSLEEAIGDKEKQMAQL 449
Cdd:TIGR02169 290 LRVKEKIGELEA-------EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER---EIEEERKRRDKLTEEY 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 450 RDQRDRAEHEKQEERDLhEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGR 529
Cdd:TIGR02169 360 AELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 530 SSADWESTKQRIARLELENERLKHDLERSQvlttfgRTTMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDAVTE 609
Cdd:TIGR02169 439 LEEEKEDKALEIKKQEWKLEQLAADLSKYE------QELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 610 VEILKEKLD------------KALYAS----------QKLIDEKDTSNKEFEKML------------------------- 642
Cdd:TIGR02169 513 EEVLKASIQgvhgtvaqlgsvGERYATaievaagnrlNNVVVEDDAVAKEAIELLkrrkagratflplnkmrderrdlsi 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 643 -----------------EKYDRAQNEIYR---LQSRCDTAEA--DRARLEVEA----ERSG------LAASKAREDLRKL 690
Cdd:TIGR02169 593 lsedgvigfavdlvefdPKYEPAFKYVFGdtlVVEDIEAARRlmGKYRMVTLEgelfEKSGamtggsRAPRGGILFSRSE 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 691 QDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKASAS 770
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 771 VEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQD--TDTFGRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFE 848
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLEArlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 849 KYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSVS 928
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 929 pgDPVRASTSSSSALSAGERQEIDRLrDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAELG 1008
Cdd:TIGR02169 913 --EKKRKRLSELKAKLEALEEELSEI-EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLD 989
|
810
....*....|....*..
gi 442623018 1009 RLHDRLEKAEAEREALR 1025
Cdd:TIGR02169 990 ELKEKRAKLEEERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
289-1027 |
2.36e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 2.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 289 RLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQE 368
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 369 RNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQ 448
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 449 LRDQRDRAehekQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLE-----ASQSELGKSKAELEKA 523
Cdd:TIGR02168 377 LEEQLETL----RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeaelkELQAELEELEEELEEL 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 524 TCEMGRSSADWESTKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRA-----QERADKAS-----AELRRTQ 593
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGvkallKNQSGLSGilgvlSELISVD 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 594 AELR-------------VTQMERDDAVTEVEILKE-----------------KLDKALYASQKLIDEKDTSNKEFEKMLE 643
Cdd:TIGR02168 533 EGYEaaieaalggrlqaVVVENLNAAKKAIAFLKQnelgrvtflpldsikgtEIQGNDREILKNIEGFLGVAKDLVKFDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 644 KYDRAQNEI---YRLQSRCDTAEADRARLEVEAE----------RSGL---AASKAREDLRKLQDESTRLQEACDRAALQ 707
Cdd:TIGR02168 613 KLRKALSYLlggVLVVDDLDNALELAKKLRPGYRivtldgdlvrPGGVitgGSAKTNSSILERRREIEELEEKIEELEEK 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 708 LSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEK 787
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 788 MRDRYEKSQVELRKLQdtdtfgRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESK 867
Cdd:TIGR02168 773 AEEELAEAEAEIEELE------AQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 868 LHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLrlqqssvspgdpvrastssssalsage 947
Cdd:TIGR02168 847 IEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL--------------------------- 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 948 RQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQEN-TESTRIEFERMGAELGRLHDRLEKAEAEREALRQ 1026
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
.
gi 442623018 1027 A 1027
Cdd:TIGR02168 980 K 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
206-919 |
2.10e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 2.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 206 EMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARD---ESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQ 282
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEeklEELKEELESLEAELEELEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 283 KQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLcaKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGT 362
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI--EELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 363 LQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDN------QVDMARARLSAMQAHHSSS----EGAL 432
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGfsegvkALLKNQSGLSGILGVLSELisvdEGYE 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 433 TSLEEAIG---------DKEKQMA----------------QLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEK 487
Cdd:TIGR02168 537 AAIEAALGgrlqavvveNLNAAKKaiaflkqnelgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 488 -LQTRLER-AVTERerleikLEASQSELGKSKAELEKATCEMGRSSADWESTKQRiarleleNERLKHDLERSQVLTTFG 565
Cdd:TIGR02168 617 aLSYLLGGvLVVDD------LDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGS-------AKTNSSILERRREIEELE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 566 RTTMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKY 645
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 646 DRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDraalqlsrakecedNARSELEHS 725
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA--------------NLRERLESL 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 726 RDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDT 805
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 806 -DTFGRETRRLKEENERLREKLDKTLMELETIRGK-SQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLElSKGEVA 883
Cdd:TIGR02168 910 rSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK-ELGPVN 988
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 442623018 884 KM----LANQEKQRSELERAHIEREKARDKHEKLLKEVDR 919
Cdd:TIGR02168 989 LAaieeYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDR 1028
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
315-1087 |
1.29e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 79.73 E-value: 1.29e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 315 DYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLE----EKNRLIEKKTqgtLQTVQERNRLTSELTELKDHMDIK---D 387
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLErlrrEREKAERYQA---LLKEKREYEGYELLKEKEALERQKeaiE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 388 RKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSS-SEGALTSLEEAIGDKEKQMAQLRdqrdRAEHEKQEERDL 466
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLE----RSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 467 HEREVADYKIKLRAAESEVEKLQTRLERAVTERERLeikleasQSELGKSKAELEKATCEMGRSSADWESTKQRIARLEL 546
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL-------TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 547 ENERLKHDLERSQvlttfgrttmttsQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVEILKEKLDKALYASQK 626
Cdd:TIGR02169 393 KLEKLKREINELK-------------RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 627 LIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEAdRARLEVEAERSGLAASKARED--------LRKLQDESTRLQ 698
Cdd:TIGR02169 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA-QARASEERVRGGRAVEEVLKAsiqgvhgtVAQLGSVGERYA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 699 EACDRAALQLSRAKECEDN--ARSELEHSRDR---------FDKLQTDIR--RAQGEKEHFQSELERVTYELERAHA--- 762
Cdd:TIGR02169 539 TAIEVAAGNRLNNVVVEDDavAKEAIELLKRRkagratflpLNKMRDERRdlSILSEDGVIGFAVDLVEFDPKYEPAfky 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 763 --AQTKASASVEAAKEEAAHY-AVELEKmrDRYEKSQVELRKLQDTDTFGRETRRLKEENERLREKLDKTLMELETIRGK 839
Cdd:TIGR02169 619 vfGDTLVVEDIEAARRLMGKYrMVTLEG--ELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 840 -SQYESESFEKYKdkyekiemEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVD 918
Cdd:TIGR02169 697 lRRIENRLDELSQ--------ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 919 RLRLQQSSVSP--GDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDAT----ELEAGRLAKELEKAQMHLAKQQEN 992
Cdd:TIGR02169 769 ELEEDLHKLEEalNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKlnrlTLEKEYLEKEIQELQEQRIDLKEQ 848
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 993 TESTRIEFERMGAELGRLHDRLEKAEAEREALRqanrsggagaAPHPQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEI 1072
Cdd:TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLE----------SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
810
....*....|....*
gi 442623018 1073 LMNFQKELQNAEAEL 1087
Cdd:TIGR02169 919 LSELKAKLEALEEEL 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
184-742 |
1.57e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 1.57e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 184 KQAMLVRQLEEELRLRMRQPNL----EMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLLEM 259
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLlklrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 260 LQAKGMGKEEERQmfqqMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQT 339
Cdd:COG1196 290 EYELLAELARLEQ----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 340 DVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLS 419
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 420 AMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTER 499
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 500 ERLEIKLEASQSELgkskAELEKATCEMGRSSADWESTKQRIARLELEN----ERLKHDLERSQVLTTFGRTTMTTSQEL 575
Cdd:COG1196 526 VAVLIGVEAAYEAA----LEAALAAALQNIVVEDDEVAAAAIEYLKAAKagraTFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 576 DRAQERADKASAELRRTQAELRVTQMERDDAVTEVEI---LKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEI 652
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRavtLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 653 YRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRD----R 728
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELpeppD 761
|
570
....*....|....
gi 442623018 729 FDKLQTDIRRAQGE 742
Cdd:COG1196 762 LEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
581-1274 |
2.71e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 2.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 581 RADKASAELRRTQAELRVTQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCD 660
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 661 TAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQ 740
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 741 GEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAhyAVELEKMRDRYEKSQVELRKLQDTDTFGRET-RRLKEEN 819
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEAlEELREEL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 820 ERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNmesklhetSLQLELSKGEVAKMLANQEKQRSELERA 899
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN--------QSGLSGILGVLSELISVDEGYEAAIEAA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 900 --------HIEREKARDKHEKLLKEVDRLR---LQQSSVSPGDP--VRASTSSSSALSAGERQEIDRLRDRLEKALQSRD 966
Cdd:TIGR02168 543 lggrlqavVVENLNAAKKAIAFLKQNELGRvtfLPLDSIKGTEIqgNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 967 ATEL------EAGRLAKELEKAQMHLAKQQEN-TESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSGgagaaphp 1039
Cdd:TIGR02168 623 GGVLvvddldNALELAKKLRPGYRIVTLDGDLvRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIA-------- 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1040 QLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTREENRKLR----NGHQVPPVAAPPAGPSP 1115
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSkeltELEAEIEELEERLEEAE 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1116 AEFQAMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASREEIEQWRKVIEQEKSRADMADKAAQEMHKRIQLMDQHI 1195
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442623018 1196 KDQHAQMQKMQQQMQQQQQAAQQAVQQAAQQQQSAAGAGgadpKELEKVRGELQAACTERDRFQQQLELLVTELEKSKM 1274
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLR----SELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
455-1024 |
5.22e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.76 E-value: 5.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 455 RAEHEKQEERDLHERevadykikLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELgkskaelekatcemgrssADW 534
Cdd:PRK02224 193 KAQIEEKEEKDLHER--------LNGLESELAELDEEIERYEEQREQARETRDEADEVL------------------EEH 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 535 ESTKQRIARLELENERLKHDLErsqvltTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDavteVEILK 614
Cdd:PRK02224 247 EERREELETLEAEIEDLRETIA------ETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA----VEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 615 EKLDKALYASQKLIDEKDTSNKEFEKMLEkydRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDES 694
Cdd:PRK02224 317 EELEDRDEELRDRLEECRVAAQAHNEEAE---SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEI 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 695 TRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEhfqselervtyelerahaaqtKASASVEAA 774
Cdd:PRK02224 394 EELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE---------------------EAEALLEAG 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 775 KEEAAHYAVELEKMRDRYEKSQVELRKLQDtdtfgrETRRLKEENERLREKLDktlmeletiRGKSQYESES-FEKYKDK 853
Cdd:PRK02224 453 KCPECGQPVEGSPHVETIEEDRERVEELEA------ELEDLEEEVEEVEERLE---------RAEDLVEAEDrIERLEER 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 854 YEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARD-------KHEKLLKEVDRLRLQQSS 926
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREevaelnsKLAELKERIESLERIRTL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 927 VSP----GDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKE-LEKAQMHLAKQQENTESTRIEFE 1001
Cdd:PRK02224 598 LAAiadaEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREdKERAEEYLEQVEEKLDELREERD 677
|
570 580
....*....|....*....|...
gi 442623018 1002 RMGAELGRLHDRLEKAEAEREAL 1024
Cdd:PRK02224 678 DLQAEIGAVENELEELEELRERR 700
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
431-921 |
5.87e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.37 E-value: 5.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 431 ALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHErEVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQ 510
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADEVLE-EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 511 SELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQV-LTTFGRTTMTTSQELDRAQERADKASAEL 589
Cdd:PRK02224 286 ERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVaAQAHNEEAESLREDADDLEERAEELREEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 590 RRTQAELRVTQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARL 669
Cdd:PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEA 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 670 E--------------VEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNAR--SELEHSRDRFDKLQ 733
Cdd:PRK02224 446 EalleagkcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDriERLEERREDLEELI 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 734 TDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDT----DTFG 809
Cdd:PRK02224 526 AERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLlaaiADAE 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 810 RETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEkyKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQ 889
Cdd:PRK02224 606 DEIERLREKREALAELNDERRERLAEKRERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEI 683
|
490 500 510
....*....|....*....|....*....|..
gi 442623018 890 EKQRSELErahiEREKARDKHEKLLKEVDRLR 921
Cdd:PRK02224 684 GAVENELE----ELEELRERREALENRVEALE 711
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
285-619 |
9.46e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 9.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 285 LDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQgtlq 364
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ---- 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 365 tvqERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDllKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEK 444
Cdd:TIGR02169 752 ---EIENVKSELKELEARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 445 QMAQLRDQRDRAEH---EKQEERDLHEREVADYKIKLRAAESEVEKLQ-------TRLERAVTERERLEIKLEASQSELG 514
Cdd:TIGR02169 827 EKEYLEKEIQELQEqriDLKEQIKSIEKEIENLNGKKEELEEELEELEaalrdleSRLGDLKKERDELEAQLRELERKIE 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 515 KSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRAQERADKASAELRRTQA 594
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLK 986
|
330 340
....*....|....*....|....*
gi 442623018 595 ELRVTQMERDDAVTEVEILKEKLDK 619
Cdd:TIGR02169 987 RLDELKEKRAKLEEERKAILERIEE 1011
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
432-1028 |
1.03e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.40 E-value: 1.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 432 LTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQS 511
Cdd:COG4913 237 LERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 512 ELGKSKAELEKATCEMgrssadWESTKQRIARLELENERLKHDLERsqvlttfgrttmtTSQELDRAQERADKASAELRR 591
Cdd:COG4913 317 RLDALREELDELEAQI------RGNGGDRLEQLEREIERLERELEE-------------RERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 592 TQAELRVTQMERDDAVTEVEILKEKLDKALYASQklidekdtsnKEFEKMLEKYDRAQNEIYRLQSRCDT--AEADRARL 669
Cdd:COG4913 378 SAEEFAALRAEAAALLEALEEELEALEEALAEAE----------AALRDLRRELRELEAEIASLERRKSNipARLLALRD 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 670 EVEAersglAASKAREDLR------KLQDESTRLQEACDRA----ALQLSRAKECEDNARSELEHSRDR----FDKLQTD 735
Cdd:COG4913 448 ALAE-----ALGLDEAELPfvgeliEVRPEEERWRGAIERVlggfALTLLVPPEHYAAALRWVNRLHLRgrlvYERVRTG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 736 IRRAQGEKEHFQSELERVTYELERAHA------AQTKASASVEAAKE-EAAHYAVELEKM----RDRYEKsqvELRKLQD 804
Cdd:COG4913 523 LPDPERPRLDPDSLAGKLDFKPHPFRAwleaelGRRFDYVCVDSPEElRRHPRAITRAGQvkgnGTRHEK---DDRRRIR 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 805 TD-TFGRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIE---------MEVQNMESKLHETSLQ 874
Cdd:COG4913 600 SRyVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAeyswdeidvASAEREIAELEAELER 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 875 LELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSVSPGDPVRASTSSSSALSAGERQ----E 950
Cdd:COG4913 680 LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfaaaL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 951 IDRLRDRLEKALQSR-DATELEAGRLAKELEKAQM-HLAKQQENTESTRIEFERMG---AELGRL-HDRLEKAEAE-REA 1023
Cdd:COG4913 760 GDAVERELRENLEERiDALRARLNRAEEELERAMRaFNREWPAETADLDADLESLPeylALLDRLeEDGLPEYEERfKEL 839
|
....*
gi 442623018 1024 LRQAN 1028
Cdd:COG4913 840 LNENS 844
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
395-921 |
1.68e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 1.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 395 RKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHE------ 468
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEkvkelk 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 469 ---------REVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSaDWESTKQ 539
Cdd:PRK03918 287 elkekaeeyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE-ERHELYE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 540 RIARLELENERLKHDLErsqvlTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVEILKEKLDk 619
Cdd:PRK03918 366 EAKAKKEELERLKKRLT-----GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP- 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 620 alyASQKLIDEKDTSNkefekMLEKYDRaqnEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREdLRKLQDESTRLQE 699
Cdd:PRK03918 440 ---VCGRELTEEHRKE-----LLEEYTA---ELKRIEKELKEIEEKERKLRKELRELEKVLKKESE-LIKLKELAEQLKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 700 AcdRAALQLSRAKECEDNARsELEHSRDRFDKLQTDIRRAQGEKEHFQsELERVTYELERAHAAQTKASASVEAAKEEAA 779
Cdd:PRK03918 508 L--EEKLKKYNLEELEKKAE-EYEKLKEKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAELLKELEELG 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 780 HYAV--------ELEKMRDRYEKSQVELRKLQDTDtfgRETRRLKEENERLREKLDKTLMELETIRGK-----SQYESES 846
Cdd:PRK03918 584 FESVeeleerlkELEPFYNEYLELKDAEKELEREE---KELKKLEEELDKAFEELAETEKRLEELRKEleeleKKYSEEE 660
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442623018 847 FEKYKDKYEKIEMEVQNMESKLHEtslqLELSKGEVAKMLANQEKQRSELERAHIEREKArdkhEKLLKEVDRLR 921
Cdd:PRK03918 661 YEELREEYLELSRELAGLRAELEE----LEKRREEIKKTLEKLKEELEEREKAKKELEKL----EKALERVEELR 727
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
153-858 |
3.82e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 3.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 153 ELKKERALRKEESAKyslindqlkllSTENQKQAMLVRQLEEELRLRmrqpnlEMQQQMEAIYAENDhlqREISILREtI 232
Cdd:PTZ00121 1102 EAKKTETGKAEEARK-----------AEEAKKKAEDARKAEEARKAE------DARKAEEARKAEDA---KRVEIARK-A 1160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 233 KDLECRVETQKQTLIARDESIKKLLEMLQAKGMGKEEE-RQMFQQMQAMAQKQLDEFR-LEIQRRDQEIL-AMAAKMKTL 309
Cdd:PTZ00121 1161 EDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDaRKAEAARKAEEERKAEEARkAEDAKKAEAVKkAEEAKKDAE 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 310 EEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSEL---TELKDHMDIK 386
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAkkkAEEAKKADEA 1320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 387 DRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLE----------EAIGDKEKQMAQLRDQRDRA 456
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEkkkeeakkkaDAAKKKAEEKKKADEAKKKA 1400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 457 EHEKQEERDLHEREVADYKI-KLRAAESEVEKLQTRLERAVTERERLEIKL---EASQSELGKSKAELEKATCEMGRSSA 532
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKAdEAKKKAEEKKKADEAKKKAEEAKKADEAKKkaeEAKKAEEAKKKAEEAKKADEAKKKAE 1480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 533 dwESTKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRAQERadKASAELRRTQAELRVTQMERDDAVTEVEI 612
Cdd:PTZ00121 1481 --EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA--KKAEEAKKADEAKKAEEKKKADELKKAEE 1556
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 613 LKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQ-NEIYRLQSRCDTAEADRARLEVEAERSGLAASKArEDLRKLQ 691
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARiEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-EEEKKKV 1635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 692 DESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYE------LERAHAAQT 765
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakkaeeLKKKEAEEK 1715
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 766 KASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGRETRRLKEENERLREKLDKTLMELETIRGKSQYESE 845
Cdd:PTZ00121 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795
|
730
....*....|...
gi 442623018 846 SFEKYKDKYEKIE 858
Cdd:PTZ00121 1796 VDKKIKDIFDNFA 1808
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
682-1469 |
7.66e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 7.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 682 KAREDLRKLQDESTRLQEACDRAALQLSRAKECED--NARSELEHS---------RDRFDKLQTDIRRAQGEKEHFQSEL 750
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLERQAEKAERYKElkAELRELELAllvlrleelREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 751 ERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQdtdtfgRETRRLKEENERLREKLDKTL 830
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE------RQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 831 MELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIE-------R 903
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARlerledrR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 904 EKARDKHEKLLKEVDRLRLQQSSVSPGDPVRASTSSSSALSAGERQEIdRLRDRLEKALQSRDATELEAGRLAKELEKAQ 983
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE-ELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 984 MHLAKQQENTESTRIEF---ERMGAELGRLHDRLEkAEAEREALRQANRSGGAGAAPHPQLEKHVQKLESDVKQLAMERE 1060
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLknqSGLSGILGVLSELIS-VDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1061 QLVLQLEKSQEILMNFQKELQNAE------AELQKTREENRKLRNG-----HQVPPVAAPPAGPSPAEFQAMqkeIQTLQ 1129
Cdd:TIGR02168 575 FLPLDSIKGTEIQGNDREILKNIEgflgvaKDLVKFDPKLRKALSYllggvLVVDDLDNALELAKKLRPGYR---IVTLD 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1130 QKLQeseRALQAAGPQQAQAAAAAGASREEIEQWRKVIEQEKSRADMADKAAQEMHKRIQLMDQHIKDQHAQMQKMQQQM 1209
Cdd:TIGR02168 652 GDLV---RPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1210 QQQQQAAQQAVqqaaqqqqsaagaggadpKELEKVRGELQAACTERDRFQQQLELLVTELEKSKMSNQEQAKQLQTAQQQ 1289
Cdd:TIGR02168 729 SALRKDLARLE------------------AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1290 VQQLQQQVQQLQQQMQQLQQAASAGAGATDVQRQQLEQQQKQLEEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEE 1369
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1370 KEKKMAEFDVQLRKRKEQMDQLEKSLQTQGGGAAAAGELNKKLMDTQRQLEACVKELQNTKEEHK-KAATETERLLQLVQ 1448
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEvRIDNLQERLSEEYS 950
|
810 820
....*....|....*....|.
gi 442623018 1449 MSQEEQNAKEKTIMDLQQALK 1469
Cdd:TIGR02168 951 LTLEEAEALENKIEDDEEEAR 971
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
341-699 |
3.38e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 341 VEEMRARLEEKNRliekktqgtlqtvqERNRLTSELTELKDHMDIKDRKISVLQRKIENLEdllkekdnqvdmarARLSA 420
Cdd:TIGR02169 676 LQRLRERLEGLKR--------------ELSSLQSELRRIENRLDELSQELSDASRKIGEIE--------------KEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 421 MQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQE-ERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTER 499
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEElEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEV 807
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 500 ERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERsqvLTTFGRTTMTTSQELDraq 579
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEE---LEEELEELEAALRDLE--- 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 580 ERADKASAELRRTQAELRVTQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLE------KYDRAQNEIY 653
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEipeeelSLEDVQAELQ 961
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 442623018 654 RLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQE 699
Cdd:TIGR02169 962 RVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
853-1428 |
3.97e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 3.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 853 KYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQssvspgDP 932
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI------AR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 933 VRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHD 1012
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1013 RLEKAEAEREALRQANRsggagaaphpQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTRE 1092
Cdd:COG1196 387 ELLEALRAAAELAAQLE----------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1093 ENRKLRnghqvppvaaPPAGPSPAEFQAMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASRE--EIEQWRKVIEQE 1170
Cdd:COG1196 457 EEEALL----------ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAalLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1171 KSRADMADKAAQEMHKRIQLMDQHIKDQHAQMQKMQQQMQQQQQAAQQAVQQAAQQQQSAAGAGGADPKELEKVRGELQA 1250
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1251 ACTERDRFQQQLELLVTElekskmSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAGAGATDVQRQQLEQQQK 1330
Cdd:COG1196 607 DLREADARYYVLGDTLLG------RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1331 QLEEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEEKEKKMAEFDVQLRKRKEQMDQLEKSLQTQGGGAAAAGELNK 1410
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
570
....*....|....*...
gi 442623018 1411 KLMDTQRQLeacvKELQN 1428
Cdd:COG1196 761 DLEELEREL----ERLER 774
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
789-1369 |
1.73e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 789 RDRYEKSQVELRKLQDtdtfgretRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKL 868
Cdd:COG1196 219 KEELKELEAELLLLKL--------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 869 HETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSVspgDPVRASTSSSSALSAGER 948
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA---EEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 949 QEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRiefERMGAELGRLHDRLEKAEAEREALRQAN 1028
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL---ERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1029 RSGGAGAAPHPQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTREENRKLRNGHQVPPVAA 1108
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1109 PPAGPSPAEFQAMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASREEIeqwrkvIEQEKSRADMADKAAQEMHKRI 1188
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF------LPLDKIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1189 QLMDQHIKDQHAQMQKMQQQMQQQQQAAQQAVQQAAQQQQSAAGAGGADPKELEKVRGELQAACTERDRFQQQLELLVTE 1268
Cdd:COG1196 599 AAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1269 LEKSKMSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAGAGATDVQRQQLEQQQKQLEEvRKQIDNQAKATEG 1348
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE-EELLEEEALEELP 757
|
570 580
....*....|....*....|.
gi 442623018 1349 ERKIIDEQRKQIDAKRKDIEE 1369
Cdd:COG1196 758 EPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
155-861 |
2.01e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 155 KKERALRKEESAKYSL---------INDQLKLLSTENQK----QAMLVRQLEEELRLRMRQPNlEMQQQMEAIYAENDHL 221
Cdd:TIGR02169 171 KKEKALEELEEVEENIerldliideKRQQLERLRREREKaeryQALLKEKREYEGYELLKEKE-ALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 222 QREISILRETIKDLECRVETQKQTLIARDESIKKLLE----MLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQ 297
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 298 EILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELT 377
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 378 ELKD-----HMDIKD--RKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLR 450
Cdd:TIGR02169 410 RLQEelqrlSEELADlnAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 451 DQRDRAEHEKQEERDlHEREVADYKIKLRAAESEV-----------EKLQTRLERAVTER-------------ERLEI-- 504
Cdd:TIGR02169 490 RELAEAEAQARASEE-RVRGGRAVEEVLKASIQGVhgtvaqlgsvgERYATAIEVAAGNRlnnvvveddavakEAIELlk 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 505 -------------KLEASQSELGKSKAE--------------------------------LEKATCEMGR---------- 529
Cdd:TIGR02169 569 rrkagratflplnKMRDERRDLSILSEDgvigfavdlvefdpkyepafkyvfgdtlvvedIEAARRLMGKyrmvtlegel 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 530 ---------SSADWESTKQRIARLELENERLKHDLERSQV-LTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVT 599
Cdd:TIGR02169 649 feksgamtgGSRAPRGGILFSRSEPAELQRLRERLEGLKReLSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 600 QMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKM---LEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERS 676
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELeedLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVS 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 677 GLAASKA-------REDLRKLQDESTRLQEACDRAALQLSRAKECE--DNARSELEHSRDRFDKLQTDIRRAQGEKEHFQ 747
Cdd:TIGR02169 809 RIEARLReieqklnRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKeiENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 748 SELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDR---YEKSQVE----------LRKLQDT-DTFGRETR 813
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEElseIEDPKGEdeeipeeelsLEDVQAElQRVEEEIR 968
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|.
gi 442623018 814 RLKEENERLREKLD---KTLMELETIRGKSQYESESFEKYKDKYEKIEMEV 861
Cdd:TIGR02169 969 ALEPVNMLAIQEYEevlKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
206-699 |
3.86e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.05 E-value: 3.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 206 EMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLL---EMLQAKGMGKEEERQMFQQMQAMAQ 282
Cdd:PRK02224 248 ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaGLDDADAEAVEARREELEDRDEELR 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 283 KQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEknrlIEKKTQGT 362
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE----LRERFGDA 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 363 lqtvqernrlTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDK 442
Cdd:PRK02224 404 ----------PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEED 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 443 EKQMAQLRDQRDRAEHEKQEERDLHEREVAdykikLRAAESEVEKLQTRLERAV----TERERLEIKLEASQsELGKSKA 518
Cdd:PRK02224 474 RERVEELEAELEDLEEEVEEVEERLERAED-----LVEAEDRIERLEERREDLEeliaERRETIEEKRERAE-ELRERAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 519 ELEkATCEMGRSSAD-----WESTKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRAQERAdKASAELRRTQ 593
Cdd:PRK02224 548 ELE-AEAEEKREAAAeaeeeAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKR-EALAELNDER 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 594 AELRVTQMERDDAvteveiLKEKLDKAlyASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEA 673
Cdd:PRK02224 626 RERLAEKRERKRE------LEAEFDEA--RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELR 697
|
490 500
....*....|....*....|....*.
gi 442623018 674 ERSGLAASKaREDLRKLQDESTRLQE 699
Cdd:PRK02224 698 ERREALENR-VEALEALYDEAEELES 722
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
735-1469 |
4.89e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 4.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 735 DIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGRETRR 814
Cdd:PTZ00121 1086 DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARK 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 815 LKEENERLREKLDKTLMELETIRgksqyESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRS 894
Cdd:PTZ00121 1166 AEEARKAEDAKKAEAARKAEEVR-----KAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 895 ELERAHIEREKARDKHEKLLKEVDRLRLQQSSVS----PGDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATEL 970
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAeearKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 971 EagrlaKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSGGAGAAPHPQLEKHVQKLEs 1050
Cdd:PTZ00121 1321 K-----KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD- 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1051 DVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEA-----ELQKTREENRKlrnGHQVPPVAAPPAGPSPAEFQAMQKEI 1125
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEkkkadEAKKKAEEAKK---ADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1126 QTLQQKLQESERALQAAGPQQAQAAAAAGASREEIEQWRKVIE----QEKSRADMADKAaqEMHKRIQLMDQHIKDQHAQ 1201
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEakkaEEAKKADEAKKA--EEAKKADEAKKAEEKKKAD 1549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1202 MQKMQQQMQQQQQAAQQAVQQAAQQQQSAAGAGGADPKELEKVRGELQAACTERDRFQQQLELLVTELEKSKmsnQEQAK 1281
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK---AEELK 1626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1282 QLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAGAGATDVQRQQLEQQQKQLEEVRKQIDNQAKATEGERKIIDEQRKQID 1361
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1362 AKRKDIEEKekkmaefdvqlrKRKEQMDQLEKSLQTQGGGAAAAGELNKKLMDTQRQLEACVKELQNTKEEHKKAATETE 1441
Cdd:PTZ00121 1707 LKKKEAEEK------------KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
730 740
....*....|....*....|....*...
gi 442623018 1442 RLLQLVqMSQEEQNAKEKTIMDLQQALK 1469
Cdd:PTZ00121 1775 KEKEAV-IEEELDEEDEKRRMEVDKKIK 1801
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
460-1378 |
7.17e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.21 E-value: 7.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 460 KQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEAsqselgKSKAELEKATCEMGRSSADWESTKQ 539
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQE------LKLKEQAKKALEYYQLKEKLELEEE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 540 RIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVEILKEKLDK 619
Cdd:pfam02463 225 YLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 620 ALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAE----RSGLAASKAREDLRKLQDEST 695
Cdd:pfam02463 305 LERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEelekLQEKLEQLEEELLAKKKLESE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 696 RLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLqtdirraqgeKEHFQSELERVTYELERAHAAQTKASASVEAAK 775
Cdd:pfam02463 385 RLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL----------KEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 776 EEAAHyaveleKMRDRYEKSQVELRKLqdtdtfgrETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYE 855
Cdd:pfam02463 455 KQELK------LLKDELELKKSEDLLK--------ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGV 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 856 KIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEV--DRLRLQQSSVSPGDPV 933
Cdd:pfam02463 521 GGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLliPKLKLPLKSIAVLEID 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 934 RASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTR-IEFERMGAELGRLHD 1012
Cdd:pfam02463 601 PILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVkASLSELTKELLEIQE 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1013 RLEKAEAEREALRQANRSGGAGAAPHPQLEKHVQKLESDVKQLAMEREqlvLQLEKSQEILMNFQKELQNAEAELQKTRE 1092
Cdd:pfam02463 681 LQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQ---EAQDKINEELKLLKQKIDEEEEEEEKSRL 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1093 ENRKLRNghqvppvaappAGPSPAEFQAMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASREEIEQWRKVIEQEKS 1172
Cdd:pfam02463 758 KKEEKEE-----------EKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQ 826
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1173 RADMADKAAQEMHKRIQLMdqhIKDQHAQMQKMQQQMQQQQQAAQQAVQQAAQQQQSAAGAGGADPKELEKVRGELQAAC 1252
Cdd:pfam02463 827 EEKIKEEELEELALELKEE---QKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELE 903
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1253 TERDRFQQQLEllvtelEKSKMSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAGAGATDVQRQQLEQQQKQL 1332
Cdd:pfam02463 904 EESQKLNLLEE------KENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNL 977
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 442623018 1333 EEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEEKEKKMAEFD 1378
Cdd:pfam02463 978 MAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFL 1023
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
353-1183 |
7.73e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 54.21 E-value: 7.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 353 RLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGAL 432
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 433 T----SLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEA 508
Cdd:pfam02463 249 EqeeiESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEK 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 509 SQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQVL--TTFGRTTMTTSQELDRAQERADKAS 586
Cdd:pfam02463 329 ELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLesERLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 587 AELRRTQAELRVTQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADR 666
Cdd:pfam02463 409 LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 667 ARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARselehSRDRFDKLQTDIRRAQGEKEHF 746
Cdd:pfam02463 489 LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENY-----KVAISTAVIVEVSATADEVEER 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 747 QselERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYeksqvelRKLQDTDTFGRETRRLKEENERLREKL 826
Cdd:pfam02463 564 Q---KLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLA-------QLDKATLEADEDDKRAKVVEGILKDTE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 827 DKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKA 906
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELK 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 907 RDKHEKLLKEVDRLRLQQssvspgDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHL 986
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQ------DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 987 AKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSGGAGAAPHPQLEKHVQKLESDVKQLAMEREQLVLQL 1066
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1067 EKSQEILMNFQKELQNAEAELQKTREENRKLRNGHQVPPVAAPPAGPSPAEFQAMQKEIQTLQQKLQESERALQAAGPQQ 1146
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
810 820 830
....*....|....*....|....*....|....*..
gi 442623018 1147 AQAAAAAGASREEIEQWRKVIEQEKSRADMADKAAQE 1183
Cdd:pfam02463 948 KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFE 984
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
171-698 |
2.22e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 171 INDQLKLLSTENQ-KQAMLVRQLEEELRLRMRQPNLEM-----------------QQQMEAIYAE----NDHLQREISIL 228
Cdd:pfam15921 243 VEDQLEALKSESQnKIELLLQQHQDRIEQLISEHEVEItgltekassarsqansiQSQLEIIQEQarnqNSMYMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 229 RETIKDLECRVETQKQTLIARDESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKT 308
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 309 LEEQHQDYQRHIAVLKESLCAKEEHYNML-----------QTDVEEMRARLEEKNRLIEKKTQGTLQ---TVQERNRLTS 374
Cdd:pfam15921 403 LWDRDTGNSITIDHLRRELDDRNMEVQRLeallkamksecQGQMERQMAAIQGKNESLEKVSSLTAQlesTKEMLRKVVE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 375 ELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARAR--LSAMQAHHSSSEG--------ALTSLEEAIGDKEK 444
Cdd:pfam15921 483 ELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdLKLQELQHLKNEGdhlrnvqtECEALKLQMAEKDK 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 445 ----------QMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTR---LERAVTERERLEIKLEASQS 511
Cdd:pfam15921 563 vieilrqqieNMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKireLEARVSDLELEKVKLVNAGS 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 512 ELGKSKA-----------ELEKATCEMGRSSADWESTKQ----RIARLELENERLKHDLERSQvlttfgrTTMTTSQELD 576
Cdd:pfam15921 643 ERLRAVKdikqerdqllnEVKTSRNELNSLSEDYEVLKRnfrnKSEEMETTTNKLKMQLKSAQ-------SELEQTRNTL 715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 577 RAQERADKASAELRR-TQAELRVTQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRL 655
Cdd:pfam15921 716 KSMEGSDGHAMKVAMgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVL 795
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 442623018 656 QSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQ 698
Cdd:pfam15921 796 RSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
220-852 |
3.68e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 220 HLQREISILRETIK---DLECRVETQKQTLIARDESIKKLlemlqakgMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRD 296
Cdd:PRK03918 173 EIKRRIERLEKFIKrteNIEELIKEKEKELEEVLREINEI--------SSELPELREELEKLEKEVKELEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 297 QEILAMAAKMKTLEEQHQDYQRHIAVLKESLcakeehynmlqTDVEEMRARLEEknrlIEKKTQGTLQTVQERNRLTSEL 376
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEI-----------EELEEKVKELKE----LKEKAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 377 TELKDHMDIKDRKISVLQRKIENLEdllkEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAigdkEKQMAQLRDQRDRA 456
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEELEERHELYEEA----KAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 457 EHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCE--MGRSSADW 534
Cdd:PRK03918 382 TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKelLEEYTAEL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 535 ESTKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRAQERADKASA----ELRRTQAELRVTQMERDDAVTEV 610
Cdd:PRK03918 462 KRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 611 EILKEKLDKAlyasQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKL 690
Cdd:PRK03918 542 KSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 691 QDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDklqtdirraqgEKEHfqSELERVTYELERAHAAQTKASAS 770
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS-----------EEEY--EELREEYLELSRELAGLRAELEE 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 771 VEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQdtdtfgretrRLKEENERLREKLD--KTLMELETIRGKSQYESESFE 848
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEEREKAKKELEKLE----------KALERVEELREKVKkyKALLKERALSKVGEIASEIFE 754
|
....
gi 442623018 849 KYKD 852
Cdd:PRK03918 755 ELTE 758
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
206-739 |
5.25e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 5.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 206 EMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLiARDESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQL 285
Cdd:PRK03918 197 EKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK-EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 286 DEFRlEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKK--TQGTL 363
Cdd:PRK03918 276 EELE-EKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLkeLEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 364 QTVQERNRLTSELTELKDHMD-----IKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEA 438
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELErlkkrLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 439 IGDKEKQMAQLrdqrdrAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLER--AVTERERLEIKLEASQSELGKS 516
Cdd:PRK03918 435 KGKCPVCGREL------TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREleKVLKKESELIKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 517 KAELEKATCE-MGRSSADWESTKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQEL--------DRAQERADKASA 587
Cdd:PRK03918 509 EEKLKKYNLEeLEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELeeelaellKELEELGFESVE 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 588 ELRRTQAELRVTQ---MERDDAVTEVEILKEKLDkalyasqKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEA 664
Cdd:PRK03918 589 ELEERLKELEPFYneyLELKDAEKELEREEKELK-------KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY 661
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442623018 665 DRARLEVEAERSGLAASKAR-EDLRKLQDESTRLQEACDRAALQLSRAK---ECEDNARSELEHSRDRFDKLQTDIRRA 739
Cdd:PRK03918 662 EELREEYLELSRELAGLRAElEELEKRREEIKKTLEKLKEELEEREKAKkelEKLEKALERVEELREKVKKYKALLKER 740
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-1173 |
7.12e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 7.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 388 RKISVLQRKIENLEDLLKEKDNQVD-MARARLSAMQAHHSSS---EGALTSLEEAIGDKEKQMAQLRDQRDRAEHEK--- 460
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLErLRREREKAERYQALLKekrEYEGYELLKEKEALERQKEAIERQLASLEEELekl 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 461 QEERDLHEREVADYKIKLRAAESEVEKL--------QTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSA 532
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 533 DWESTKQRIARLELENERLKhdlersqvlttfgrttmttsQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVEI 612
Cdd:TIGR02169 337 EIEELEREIEEERKRRDKLT--------------------EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 613 LKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQD 692
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 693 ESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKAsasVE 772
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNN---VV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 773 AAKEEAAHYAVELEKMRDRYEKSQVELRKLQDtdtFGRETRRLKEENerlrekldKTLMELETIRGKSQYESESFEKYKD 852
Cdd:TIGR02169 554 VEDDAVAKEAIELLKRRKAGRATFLPLNKMRD---ERRDLSILSEDG--------VIGFAVDLVEFDPKYEPAFKYVFGD 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 853 KyekieMEVQNMES-KLHETSLQLELSKGEVakmlanqekqrselerahierekardkhekllkevdrlrLQQSSVSPGD 931
Cdd:TIGR02169 623 T-----LVVEDIEAaRRLMGKYRMVTLEGEL---------------------------------------FEKSGAMTGG 658
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 932 PVRASTSSSSALSagERQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLH 1011
Cdd:TIGR02169 659 SRAPRGGILFSRS--EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK 736
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1012 DRLEKAEAEREALRQANRSggagaaphpqLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMnfQKELQNAEAELQKTR 1091
Cdd:TIGR02169 737 ERLEELEEDLSSLEQEIEN----------VKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLE 804
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1092 EENRKLRnghQVPPVAAPPAGPSPAEFQAMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASREEIEQWRKVIEQEK 1171
Cdd:TIGR02169 805 EEVSRIE---ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
..
gi 442623018 1172 SR 1173
Cdd:TIGR02169 882 SR 883
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
182-900 |
1.05e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 182 NQKQAMLVRQLEEELRLRMRQPNLEMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLLEML- 260
Cdd:pfam15921 101 HEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMl 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 261 -----------------QAKGMGKEEERQM----FQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLE--------- 310
Cdd:pfam15921 181 shegvlqeirsilvdfeEASGKKIYEHDSMstmhFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKsesqnkiel 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 311 --EQHQD--------YQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQErnrLTSELTELK 380
Cdd:pfam15921 261 llQQHQDrieqliseHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQ---LRSELREAK 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 381 dhmdikdrkiSVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDR----- 455
Cdd:pfam15921 338 ----------RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrd 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 456 ------AEHEKQEERDlHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGR 529
Cdd:pfam15921 408 tgnsitIDHLRRELDD-RNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTA 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 530 SSADWESTKQRIARLELENERLKHDLERSQV-LTTFGRTTMTTSQELDRAQERADkasaELRRTQAELRVTQMERDDAVT 608
Cdd:pfam15921 487 KKMTLESSERTVSDLTASLQEKERAIEATNAeITKLRSRVDLKLQELQHLKNEGD----HLRNVQTECEALKLQMAEKDK 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 609 EVEILKEKLDKALYAS-----------------QKLIDEKDTSNKEFEKMLEKYDraqNEIYRLQSRCDTAEADRARLev 671
Cdd:pfam15921 563 VIEILRQQIENMTQLVgqhgrtagamqvekaqlEKEINDRRLELQEFKILKDKKD---AKIRELEARVSDLELEKVKL-- 637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 672 eaERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKEC-EDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSEL 750
Cdd:pfam15921 638 --VNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVlKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTL 715
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 751 ErvtyelerahaaqtkasaSVEAAKEEAAHYAVELEKM----RDRYEKSQVELRKLQDTDT-FGRETRRLKEENERLREK 825
Cdd:pfam15921 716 K------------------SMEGSDGHAMKVAMGMQKQitakRGQIDALQSKIQFLEEAMTnANKEKHFLKEEKNKLSQE 777
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442623018 826 LDKTLMELETIRGKsqyesesFEKYKDKYEKIEMEVQNMESKLHETSLQLelskGEVAKMLANQEKQRSELERAH 900
Cdd:pfam15921 778 LSTVATEKNKMAGE-------LEVLRSQERRLKEKVANMEVALDKASLQF----AECQDIIQRQEQESVRLKLQH 841
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
79-503 |
1.49e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 79 LEDELYGRSArqspSAMGGYNTGMGPTSDRAYLGDlqhQNTDLQRELGNLKRELELTNQKLgssmHSIKTfwspELKKER 158
Cdd:TIGR02169 644 LEGELFEKSG----AMTGGSRAPRGGILFSRSEPA---ELQRLRERLEGLKRELSSLQSEL----RRIEN----RLDELS 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 159 ALRKEESAKYSLINDQLKLLSTENQKQAMLVRQLEEELRlrmrqpnlEMQQQMEAIYAENDHLQREISILRETIKDLECR 238
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS--------SLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 239 VETQKQTLiaRDESIKKLLEMLQAkgmgKEEERQmfqqmqaMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYqr 318
Cdd:TIGR02169 781 LNDLEARL--SHSRIPEIQAELSK----LEEEVS-------RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL-- 845
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 319 hiavlkeslcakEEHYNMLQTDVEEMRARLEEKNRLIEKKTqgtlqtvQERNRLTSELTELKDHMDIKDRKISVLQRKIE 398
Cdd:TIGR02169 846 ------------KEQIKSIEKEIENLNGKKEELEEELEELE-------AALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 399 NLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEaIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKL 478
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE-IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVL 985
|
410 420
....*....|....*....|....*
gi 442623018 479 RAAESEVEKLQTRLERAVTERERLE 503
Cdd:TIGR02169 986 KRLDELKEKRAKLEEERKAILERIE 1010
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
297-832 |
1.59e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 297 QEILAMAAKMKTLEEQHQDYQRHIAvLKESLCAKEEHYNML-----QTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNR 371
Cdd:COG4913 242 EALEDAREQIELLEPIRELAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 372 LTSELTELK-DHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIgdkekqmAQLR 450
Cdd:COG4913 321 LREELDELEaQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA-------AALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 451 DQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTrleRAVTERERLEIKLEASQSELGKSKAELEKAtCE---M 527
Cdd:COG4913 394 EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER---RKSNIPARLLALRDALAEALGLDEAELPFV-GElieV 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 528 GRSSADWE--------STKQRI---------ARLELENERLKHDLERSQVLTTFGRTTMTT------SQELD-RAQERAD 583
Cdd:COG4913 470 RPEEERWRgaiervlgGFALTLlvppehyaaALRWVNRLHLRGRLVYERVRTGLPDPERPRldpdslAGKLDfKPHPFRA 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 584 KASAELRR--------TQAELRVTQMerddAVTEVEILK------EKLDKALYASQKLIDEkdtSNKEFEKMLEK-YDRA 648
Cdd:COG4913 550 WLEAELGRrfdyvcvdSPEELRRHPR----AITRAGQVKgngtrhEKDDRRRIRSRYVLGF---DNRAKLAALEAeLAEL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 649 QNEIYRLQSRCDTAEADRARLE--VEAERSGLAASKAREDLRKLQDESTRLQ---EACDRAALQLSRAKECEDNARSELE 723
Cdd:COG4913 623 EEELAEAEERLEALEAELDALQerREALQRLAEYSWDEIDVASAEREIAELEaelERLDASSDDLAALEEQLEELEAELE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 724 HSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELErahaaqtkasasvEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQ 803
Cdd:COG4913 703 ELEEELDELKGEIGRLEKELEQAEEELDELQDRLE-------------AAEDLARLELRALLEERFAAALGDAVERELRE 769
|
570 580
....*....|....*....|....*....
gi 442623018 804 DtdtFGRETRRLKEENERLREKLDKTLME 832
Cdd:COG4913 770 N---LEERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
337-543 |
1.69e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 337 LQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLE----DLLKEKDNQVD 412
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEkeiaELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 413 MARARLSAMQAHHSSSEGALTSLEEAIGDKE------KQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVE 486
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442623018 487 KLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIAR 543
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-527 |
1.93e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 156 KERALRKEESAKYSLINDQLKLLSTENQKQAMLVRQLEEELRLRMRQPNLEmqqqmeaiyAENDHLQREISILRETIKDL 235
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE---------ERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 236 ECRVETQKQTLIARDESIKKLlemlqakgmgkEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQD 315
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEEL-----------EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 316 YQRHIAVLKESLCAKEEhynmlqtDVEEMRARLEEKNRLIEKktqgtlqtvqernrLTSELTELKDHMDIKDRKISVLQR 395
Cdd:TIGR02168 836 TERRLEDLEEQIEELSE-------DIESLAAEIEELEELIEE--------------LESELEALLNERASLEEALALLRS 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 396 KIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEeaigdkekqmAQLRDQRDRAEHEKQEERDLHEREVADYK 475
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE----------VRIDNLQERLSEEYSLTLEEAEALENKIE 964
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442623018 476 IKLRAAESEVEKLQTRLER-------AVTERERLE---IKLEASQSELGKSKAELEKATCEM 527
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKeryDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
459-684 |
2.64e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 459 EKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTK 538
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 539 QRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRAQERADKASAE-LRRTQAELRVTQMERDDAVTEVEILKEKL 617
Cdd:COG4942 104 EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEeLRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442623018 618 DKALYASQKLIDEKDTSNKEFEKMLEKYDRA----QNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAR 684
Cdd:COG4942 184 EEERAALEALKAERQKLLARLEKELAELAAElaelQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
574-1102 |
3.54e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 574 ELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVEILKEKLDKAlyasQKLIDEKDTSNKEfekmlekydRAQNEIY 653
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDEL----EAQIRGNGGDRLE---------QLEREIE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 654 RLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRaalQLSRAKECEDNARSELEHSRDRFDKLQ 733
Cdd:COG4913 349 RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE---ELEALEEALAEAEAALRDLRRELRELE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 734 TDIRRAQGEKEHFQSELERVTYELERAhaaqtkasasvEAAKEEAAHYAVELEKMRDRYEKSQ--VE-------LRKLQD 804
Cdd:COG4913 426 AEIASLERRKSNIPARLLALRDALAEA-----------LGLDEAELPFVGELIEVRPEEERWRgaIErvlggfaLTLLVP 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 805 TDTFGRETRRLKEENERLR---EKLDKTLMELETIR-------GKSQYESESFEKYkdkyekIEMEVQNM---------- 864
Cdd:COG4913 495 PEHYAAALRWVNRLHLRGRlvyERVRTGLPDPERPRldpdslaGKLDFKPHPFRAW------LEAELGRRfdyvcvdspe 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 865 ESKLHETSLQLE-LSKG---------------------EVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRL 922
Cdd:COG4913 569 ELRRHPRAITRAgQVKGngtrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 923 QQSSVSpgdpvraSTSSSSALSAGERQEIDRLRDRLEKALQSRDateleagrlakELEKAQMHLAKQQENTESTRIEFER 1002
Cdd:COG4913 649 ALQRLA-------EYSWDEIDVASAEREIAELEAELERLDASSD-----------DLAALEEQLEELEAELEELEEELDE 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1003 MGAELGRLHDRLEKAEAEREALRQANRSGGAGAAPHPQLEkhvqkLESDVKQLAMEreqlvlqlEKSQEILMNFQKELQN 1082
Cdd:COG4913 711 LKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL-----LEERFAAALGD--------AVERELRENLEERIDA 777
|
570 580
....*....|....*....|
gi 442623018 1083 AEAELQKTREENRKLRNGHQ 1102
Cdd:COG4913 778 LRARLNRAEEELERAMRAFN 797
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
664-1065 |
4.21e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.41 E-value: 4.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 664 ADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRrAQGEK 743
Cdd:COG3096 271 ADYMRHANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALR-QQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 744 EHFQSELERVTYELERAHAAqtkasasVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDT-DTfgRETRRLKEENERl 822
Cdd:COG3096 350 ERYQEDLEELTERLEEQEEV-------VEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAlDV--QQTRAIQYQQAV- 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 823 rekldKTLMELETIRGKSQYESESFEKYkdkyekiEMEVQNMESKLHETSLQLElSKGEVAKMLANQEKQRSELERA--- 899
Cdd:COG3096 420 -----QALEKARALCGLPDLTPENAEDY-------LAAFRAKEQQATEEVLELE-QKLSVADAARRQFEKAYELVCKiag 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 900 HIEREKARDKHEKLLKEVDRLRLQQSSVSPGDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKEL 979
Cdd:COG3096 487 EVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 980 EKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSGGAGAAPHPQLEKHVQKLESDVKQLAMER 1059
Cdd:COG3096 567 EELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVER 646
|
....*.
gi 442623018 1060 EQLVLQ 1065
Cdd:COG3096 647 DELAAR 652
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
290-457 |
4.83e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 4.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 290 LEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKT--QGTLQTVQ 367
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEeqLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 368 ERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAhhsssegaltSLEEAIGDKEKQMA 447
Cdd:COG1579 90 EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKA----------ELDEELAELEAELE 159
|
170
....*....|
gi 442623018 448 QLRDQRDRAE 457
Cdd:COG1579 160 ELEAEREELA 169
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
573-802 |
8.68e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 8.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 573 QELDRAQERADKASAElRRTQAELRVTQMERDDAVTEVEILKEKLDKA-LYASQKLIDEKDtsnKEFEKMLEKYDRAQNE 651
Cdd:COG4913 235 DDLERAHEALEDAREQ-IELLEPIRELAERYAAARERLAELEYLRAALrLWFAQRRLELLE---AELEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 652 IYRLQSRCDTAEADRARLEVEAERSGLaaskarEDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDK 731
Cdd:COG4913 311 LERLEARLDALREELDELEAQIRGNGG------DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442623018 732 LQTDIRRAqgekehfqseLERVTYELERAHAAQTKASASVEAAKEEAAHYAVE---LEKMRDRYEKSQVELRKL 802
Cdd:COG4913 385 LRAEAAAL----------LEALEEELEALEEALAEAEAALRDLRRELRELEAEiasLERRKSNIPARLLALRDA 448
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
285-855 |
1.04e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.20 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 285 LDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIE--KKTQGT 362
Cdd:PRK01156 185 IDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESeiKTAESD 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 363 LQTVQERNRLTSELTElkDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMararLSAMQAHHSSSEGALTSLEEAigdk 442
Cdd:PRK01156 265 LSMELEKNNYYKELEE--RHMKIINDPVYKNRNYINDYFKYKNDIENKKQI----LSNIDAEINKYHAIIKKLSVL---- 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 443 EKQMAQLRDQRDRAEHEKQEERDLHEREvADYKIKLRAAES---EVEKLQTRLERAVTERERLEIKLEASQSELGKSKAE 519
Cdd:PRK01156 335 QKDYNDYIKKKSRYDDLNNQILELEGYE-MDYNSYLKSIESlkkKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 520 LEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQVL---------TTFGRTTMTTSQELDRAQERADKASAELR 590
Cdd:PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCpvcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVK 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 591 RTQAELR-VTQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLeKYDRAQNEIYRL------QSRCD--T 661
Cdd:PRK01156 494 DIDEKIVdLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHD-KYEEIKNRYKSLkledldSKRTSwlN 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 662 AEADRARLEVEAERsglaaSKAREDLRKLQDESTRLQEAC----DRAALQLSRAKECEDNARS------ELEHSRDRFDK 731
Cdd:PRK01156 573 ALAVISLIDIETNR-----SRSNEIKKQLNDLESRLQEIEigfpDDKSYIDKSIREIENEANNlnnkynEIQENKILIEK 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 732 LQ---TDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTF 808
Cdd:PRK01156 648 LRgkiDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 442623018 809 GRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYE 855
Cdd:PRK01156 728 MKKIKKAIGDLKRLREAFDKSGVPAMIRKSASQAMTSLTRKYLFEFN 774
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
461-879 |
1.18e-04 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 46.56 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 461 QEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATC---EMGRSSADWEST 537
Cdd:pfam05701 41 ELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIEELKLNLERAQTEEAQAKQDSELAKLrveEMEQGIADEASV 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 538 kqrIARLELENerlkhdlersqvlttfgrttmttsqeldrAQERADKASAELRRTQAELRVTQMERDDAVTEVEILKEKL 617
Cdd:pfam05701 121 ---AAKAQLEV-----------------------------AKARHAAAVAELKSVKEELESLRKEYASLVSERDIAIKRA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 618 DKALYASqklidekdtsnKEFEKMLEKydrAQNEIYRLQSRCDTAEAdrARLEVEAERSGLAASKaREDLRKLQDESTRL 697
Cdd:pfam05701 169 EEAVSAS-----------KEIEKTVEE---LTIELIATKESLESAHA--AHLEAEEHRIGAALAR-EQDKLNWEKELKQA 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 698 QEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTK----ASASVEA 773
Cdd:pfam05701 232 EEELQRLNQQLLSAKDLKSKLETASALLLDLKAELAAYMESKLKEEADGEGNEKKTSTSIQAALASAKKeleeVKANIEK 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 774 AKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFG--------RETRRLK--------------EENERLREKLDKTLM 831
Cdd:pfam05701 312 AKDEVNCLRVAAASLRSELEKEKAELASLRQREGMAsiavssleAELNRTKseialvqakekearEKMVELPKQLQQAAQ 391
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 442623018 832 ELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSK 879
Cdd:pfam05701 392 EAEEAKSLAQAAREELRKAKEEAEQAKAAASTVESRLEAVLKEIEAAK 439
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
664-1062 |
1.54e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 1.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 664 ADRARLEVEAERSGLAASKAREDL----RKLQDESTRLQEACDRAALQLSRAKECEDnarsELEHSRDRFDKLQTDiRRA 739
Cdd:PRK04863 272 ADYMRHANERRVHLEEALELRRELytsrRQLAAEQYRLVEMARELAELNEAESDLEQ----DYQAASDHLNLVQTA-LRQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 740 QGEKEHFQSELERVTYELERAHAAqtkasasVEAAKEEAAhyavELEKMRDRYEKSQVELRKlQDTDTFGR----ETRRL 815
Cdd:PRK04863 347 QEKIERYQADLEELEERLEEQNEV-------VEEADEQQE----ENEARAEAAEEEVDELKS-QLADYQQAldvqQTRAI 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 816 KEENERlrekldKTLMELETIRGKSQYESESFEKYKDKYekiemevQNMESKLHETSLQLElSKGEVAKMLANQEKQRSE 895
Cdd:PRK04863 415 QYQQAV------QALERAKQLCGLPDLTADNAEDWLEEF-------QAKEQEATEELLSLE-QKLSVAQAAHSQFEQAYQ 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 896 LERA---HIEREKARDKHEKLLKEVDRLRLQQSSVSPgdpvRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEA 972
Cdd:PRK04863 481 LVRKiagEVSRSEAWDVARELLRRLREQRHLAEQLQQ----LRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDEL 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 973 GRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAE----REALRQANRSGGAGAAPHPQLEKHVQKL 1048
Cdd:PRK04863 557 EQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAwlaaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
410
....*....|....
gi 442623018 1049 ESDVKQLAMEREQL 1062
Cdd:PRK04863 637 LERERELTVERDEL 650
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
347-797 |
1.69e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 347 RLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDnqvdmARARLSAMQAHHS 426
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA-----LEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 427 SSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKL 506
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 507 EASQSELGKSKAELEKATCEMGrssadWESTKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRAQERADKAS 586
Cdd:COG4717 230 EQLENELEAAALEERLKEARLL-----LLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 587 AELRRTQAELRVTQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADR 666
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 667 ARLEVEAERsglaASKAREDLRKLQDESTRLQEACD-----RAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQG 741
Cdd:COG4717 385 EELRAALEQ----AEEYQELKEELEELEEQLEELLGeleelLEALDEEELEEELEELEEELEELEEELEELREELAELEA 460
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 442623018 742 EKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAveLEKMRDRYEKSQV 797
Cdd:COG4717 461 ELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALEL--LEEAREEYREERL 514
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
948-1137 |
2.16e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 948 RQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQA 1027
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1028 -----------NRSGGAGAAPHPQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTREENRK 1096
Cdd:COG4942 106 laellralyrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 442623018 1097 LRNGHQVPPVAAPPAGPS-PAEFQAMQKEIQTLQQKLQESER 1137
Cdd:COG4942 186 ERAALEALKAERQKLLARlEKELAELAAELAELQQEAEELEA 227
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
367-508 |
2.29e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.53 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 367 QERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGA---------LTSLEE 437
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeyealqkeIESLKR 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442623018 438 AIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEA 508
Cdd:COG1579 104 RISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
367-597 |
2.98e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 367 QERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQM 446
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 447 AQLRDQRdraeheKQEERDLHEREVADYKIKLRAAES--EVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKAT 524
Cdd:COG4942 100 EAQKEEL------AELLRALYRLGRQPPLALLLSPEDflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442623018 525 CEMGRSSADWESTKQRIARLELENERLKHDLERSQvlttfgRTTMTTSQELDRAQERADKASAELRRTQAELR 597
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKEL------AELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
178-843 |
3.15e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 3.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 178 LSTENQKQAMLVRQLEEELRLRMRQPN---LEMQQQMEAIYAENDHLQREISILRETIKDLEcRVETQKQTLIARDESIK 254
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADeirDEKKGLGRTIELKKEILEKKQEELKFVIKELQ-QLEGSSDRILELDQELR 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 255 K------------LLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAV 322
Cdd:TIGR00606 482 KaerelskaeknsLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDE 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 323 LKESLC------AKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMdIKDRKISVLQRK 396
Cdd:TIGR00606 562 LTSLLGyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL-FDVCGSQDEESD 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 397 IENLEDLLKEKDNQvdmaRARLSAMQAHHSSSEGALTsleeaigDKEKQMAQLRDQRDRAEHEKQEErdlhereVADYKI 476
Cdd:TIGR00606 641 LERLKEEIEKSSKQ----RAMLAGATAVYSQFITQLT-------DENQSCCPVCQRVFQTEAELQEF-------ISDLQS 702
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 477 KLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLE 556
Cdd:TIGR00606 703 KLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEE 782
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 557 RSQVLTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQMErddavteveilKEKLDKAlyasqkliDEKDTSNK 636
Cdd:TIGR00606 783 SAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVN-----------QEKQEKQ--------HELDTVVS 843
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 637 EFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRaALQLSRAKECED 716
Cdd:TIGR00606 844 KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ-DSPLETFLEKDQ 922
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 717 NARSELEHSRDRFDKLQ----TDIRRAQGEKEHFQSELERVTYELERAHAAQ-----TKASASVEAAKEEAAHYAVELEK 787
Cdd:TIGR00606 923 QEKEELISSKETSNKKAqdkvNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQketelNTVNAQLEECEKHQEKINEDMRL 1002
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 442623018 788 MRDRYEKSQVELRKLQDTDTFGRETRRLKEEnERLREKLDKTLMELETIRGKSQYE 843
Cdd:TIGR00606 1003 MRQDIDTQKIQERWLQDNLTLRKRENELKEV-EEELKQHLKEMGQMQVLQMKQEHQ 1057
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
393-1014 |
3.61e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 393 LQRKIENLEDLLKEKdnqVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVA 472
Cdd:pfam12128 288 LNQLLRTLDDQWKEK---RDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLK 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 473 DYKIKLRAAESEVEKL-QTRLERAVTERERLEIKLEASQSELGKSKAELE---KATCEMGRSSADWESTKQRIARLELEN 548
Cdd:pfam12128 365 ALTGKHQDVTAKYNRRrSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEddlQALESELREQLEAGKLEFNEEEYRLKS 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 549 --ERLKHDLERSQVLTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDAvteveilkeklDKALYASQK 626
Cdd:pfam12128 445 rlGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQA-----------SEALRQASR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 627 LIDEKDTSNKEFEKMLekYDRAQNEIYRLQSRCDTAEADRARLEVEAERsglaaskAREDLRKLQDESTRLQEACDRAAL 706
Cdd:pfam12128 514 RLEERQSALDELELQL--FPQAGTLLHFLRKEAPDWEQSIGKVISPELL-------HRTDLDPEVWDGSVGGELNLYGVK 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 707 QLSRAKECEDNARSElEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELE 786
Cdd:pfam12128 585 LDLKRIDVPEWAASE-EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQ 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 787 KMRDRYEKSQVELRKLQDTD--TFGRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNM 864
Cdd:pfam12128 664 SEKDKKNKALAERKDSANERlnSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRS 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 865 ESKLHETSLQLEL-----SKGEVAKMLANQEKQRSELERAhIEReKARDKHEKLLKEvdrlRLQQSSVSPGDPVRASTSS 939
Cdd:pfam12128 744 GAKAELKALETWYkrdlaSLGVDPDVIAKLKREIRTLERK-IER-IAVRRQEVLRYF----DWYQETWLQRRPRLATQLS 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 940 SSALSAGE-RQEIDRL----RDRLEKALQSRDATELEAGRLAKELEK--------AQMHLAKQQENTESTRIEFERMGAE 1006
Cdd:pfam12128 818 NIERAISElQQQLARLiadtKLRRAKLEMERKASEKQQVRLSENLRGlrcemsklATLKEDANSEQAQGSIGERLAQLED 897
|
....*...
gi 442623018 1007 LGRLHDRL 1014
Cdd:pfam12128 898 LKLKRDYL 905
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
303-425 |
4.15e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.85 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 303 AAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEkktqgtlqtvqernRLTSELTELKDH 382
Cdd:COG2433 391 PEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIE--------------RLERELSEARSE 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 442623018 383 MDI---KDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHH 425
Cdd:COG2433 457 ERReirKDREISRLDREIERLERELEEERERIEELKRKLERLKELW 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1239-1489 |
4.70e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 4.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1239 KELEKVRGELQAACTERDRFQQQLELLVTELEKSKMSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAgagat 1318
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE----- 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1319 dvQRQQLEQQQKQLEEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEEKEKKMAEfdvQLRKRKEQMDQLEKSLQTQ 1398
Cdd:COG1196 314 --LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE---AEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1399 GGGAAAAGELNKKLMDTQRQLEACVKELQNTKEEHKKAATETERLLQLVQMSQEEQNAKEKTIMDLQQALKIAQAKVKQA 1478
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250
....*....|.
gi 442623018 1479 QTQQQQQQDAG 1489
Cdd:COG1196 469 LEEAALLEAAL 479
|
|
| PHA00430 |
PHA00430 |
tail fiber protein |
679-808 |
5.84e-04 |
|
tail fiber protein
Pssm-ID: 222790 [Multi-domain] Cd Length: 568 Bit Score: 44.50 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 679 AASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELE 758
Cdd:PHA00430 167 EANRSRNEADRARNQAERFNNESGASATNTKQWRSEADGSNSEANRFKGYADSMTSSVEAAKGQAESSSKEANTAGDYAT 246
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 442623018 759 RAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTF 808
Cdd:PHA00430 247 KAAASASAAHASEVNAANSATAAATSANRAKQQADRAKTEADKLGNMNGF 296
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
198-487 |
5.96e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.51 E-value: 5.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 198 LRMRQPNLEMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIaRDESIKKLLEMLQakgmgkeeerqmfqqm 277
Cdd:PLN02939 145 LLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKI-HVEILEEQLEKLR---------------- 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 278 qamaqkqlDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTdVEEMRARLEEKNRLIEK 357
Cdd:PLN02939 208 --------NELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFK-LEKERSLLDASLRELES 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 358 KtqgtLQTVQErnrltseltelkDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEE 437
Cdd:PLN02939 279 K----FIVAQE------------DVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKE 342
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 442623018 438 AIGDK---------EKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEK 487
Cdd:PLN02939 343 ANVSKfssykvellQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
285-517 |
6.27e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 6.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 285 LDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQ--GT 362
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEelAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 363 LQTVQERNRLTSELTELKDHMDIKDrkisvLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDK 442
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSPEDFLD-----AVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442623018 443 EKQMAQLRDQRDraehEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSK 517
Cdd:COG4942 184 EEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
285-498 |
1.06e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 285 LDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRhiavlKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEK--KTQGT 362
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQE-----RREALQRLAEYSWDEIDVASAEREIAELEAELERldASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 363 LQTVQER-NRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDmararlsamQAHHSSSEGALTSLEEaigd 441
Cdd:COG4913 687 LAALEEQlEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE---------AAEDLARLELRALLEE---- 753
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 442623018 442 kekqmaqLRDQRDRAEHEKQEERDLHERevadykikLRAAESEVEKLQTRLERAVTE 498
Cdd:COG4913 754 -------RFAAALGDAVERELRENLEER--------IDALRARLNRAEEELERAMRA 795
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
337-502 |
1.18e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 337 LQTDVEEMRARLE---EKNRLIEKKTQGTlQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKE--KDNQV 411
Cdd:COG3206 187 LRKELEEAEAALEefrQKNGLVDLSEEAK-LLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEllQSPVI 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 412 DMARARLSAMQAhhsssegALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERdlhEREVADYKIKLRAAESEVEKLQTR 491
Cdd:COG3206 266 QQLRAQLAELEA-------ELAELSARYTPNHPDVIALRAQIAALRAQLQQEA---QRILASLEAELEALQAREASLQAQ 335
|
170
....*....|.
gi 442623018 492 LERAVTERERL 502
Cdd:COG3206 336 LAQLEARLAEL 346
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
217-1026 |
1.26e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 217 ENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLLE---MLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQ 293
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEeeyLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 294 RRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEhynmLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLT 373
Cdd:pfam02463 261 EKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK----SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 374 SEltELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQR 453
Cdd:pfam02463 337 IE--ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 454 DRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLE--RAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSS 531
Cdd:pfam02463 415 RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEkqELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQK 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 532 ADWESTKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELD---------RAQERADKASAELRRTQAELRVTQME 602
Cdd:pfam02463 495 LEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEnykvaistaVIVEVSATADEVEERQKLVRALTELP 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 603 RDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASK 682
Cdd:pfam02463 575 LGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 683 AREDLRKLQDESTRLQEACDRAALQLSRAKECEDNArsELEHSRDRFDKLQTDIRRAQGEKEHFQSELERvtyELERAHA 762
Cdd:pfam02463 655 EEGLAEKSEVKASLSELTKELLEIQELQEKAESELA--KEEILRRQLEIKKKEQREKEELKKLKLEAEEL---LADRVQE 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 763 AQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGRETRRLKEENERLREKLDKTLMELETIRGKSQY 842
Cdd:pfam02463 730 AQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEE 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 843 ESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRL 922
Cdd:pfam02463 810 LKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELE 889
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 923 QQSSVSPGDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFER 1002
Cdd:pfam02463 890 SKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAK 969
|
810 820
....*....|....*....|....
gi 442623018 1003 MGAELGRLHDRLEKAEAEREALRQ 1026
Cdd:pfam02463 970 EELGKVNLMAIEEFEEKEERYNKD 993
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
285-485 |
1.98e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 285 LDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHiavlkeslcakeEHYNMLQTDVEEMRARLEEKNRLIEK--KTQGT 362
Cdd:COG4913 619 LAELEEELAEAEERLEALEAELDALQERREALQRL------------AEYSWDEIDVASAEREIAELEAELERldASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 363 LQTVQER-NRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDmaraRLSAMQAHHSSSEGALTSLEEAIGD 441
Cdd:COG4913 687 LAALEEQlEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE----AAEDLARLELRALLEERFAAALGDA 762
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 442623018 442 KEKQM-AQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEV 485
Cdd:COG4913 763 VERELrENLEERIDALRARLNRAEEELERAMRAFNREWPAETADL 807
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1239-1474 |
2.07e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1239 KELEKVRGELQAACTERDRFQQQLELLVTELEKSKMSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAGAGAT 1318
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1319 DVQRQQLEQQQKQLEEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEEKEKKMAEfdvQLRKRKEQMDQLEKSLQTQ 1398
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE---LAAQLEELEEAEEALLERL 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442623018 1399 GGGAAAAGELNKKLMDTQRQLEACVKELQNTKEEHKKAATETERLLQLVQMSQEEQNAKEKTIMDLQQALKIAQAK 1474
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
114-521 |
2.24e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 2.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 114 LQHQNTDLQRELGNLKRELELTNQKLGSSMHSIKTFWSP-------------ELKKERALRKEESAKYSLINDQLKLLST 180
Cdd:TIGR04523 216 LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQlnqlkdeqnkikkQLSEKQKELEQNNKKIKELEKQLNQLKS 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 181 E-----NQKQAMLVRQLEEELRlrmrqpnlEMQQQMEAIYAENDHLQREISILRETIKDLECRV---ETQKQTLIARDES 252
Cdd:TIGR04523 296 EisdlnNQKEQDWNKELKSELK--------NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELtnsESENSEKQRELEE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 253 IKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDY-------QRHIAVLKE 325
Cdd:TIGR04523 368 KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLketiiknNSEIKDLTN 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 326 SLCAKEEHYNMLQTDVEEMRARLEEKNRLI-------EKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIE 398
Cdd:TIGR04523 448 QDSVKELIIKNLDNTRESLETQLKVLSRSInkikqnlEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 399 NLEDLLKEKDNQVDMARARLSAMQAHHSSSEgaltsLEEAIGDKEKQMAQLR---DQRDRAEHEKQEERDLHEREVADYK 475
Cdd:TIGR04523 528 KLESEKKEKESKISDLEDELNKDDFELKKEN-----LEKEIDEKNKEIEELKqtqKSLKKKQEEKQELIDQKEKEKKDLI 602
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 442623018 476 IKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELE 521
Cdd:TIGR04523 603 KEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVK 648
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
297-545 |
2.43e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 297 QEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKE--EHYnmlQTDVEEMRARLEEKNRLIEkKTQGTLQTVQERNRLT- 373
Cdd:COG3096 313 RELEELSARESDLEQDYQAASDHLNLVQTALRQQEkiERY---QEDLEELTERLEEQEEVVE-EAAEQLAEAEARLEAAe 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 374 SELTELKDHMDIKDRKISVLQRK------------------------IENLEDLL-------KEKDNQVDMARARLSAMQ 422
Cdd:COG3096 389 EEVDSLKSQLADYQQALDVQQTRaiqyqqavqalekaralcglpdltPENAEDYLaafrakeQQATEEVLELEQKLSVAD 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 423 AHHSSSEGALTSLEEAIGDKEKQMA---------QLRDQRDRAEHEKQEERDLHEREVADYkiKLRAAESEVEKLQTRLE 493
Cdd:COG3096 469 AARRQFEKAYELVCKIAGEVERSQAwqtarellrRYRSQQALAQRLQQLRAQLAELEQRLR--QQQNAERLLEEFCQRIG 546
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 442623018 494 RAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLE 545
Cdd:COG3096 547 QQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA 598
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
337-543 |
2.47e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 337 LQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEkdnqvdmaRA 416
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE--------RA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 417 RLSAMQAHHSSSEGAL---TSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDL--HEREVADYKIKLRAAESEVEKLQTR 491
Cdd:COG3883 93 RALYRSGGSVSYLDVLlgsESFSDFLDRLSALSKIADADADLLEELKADKAELeaKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 442623018 492 LERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIAR 543
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
573-827 |
3.83e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 573 QELDRAQERADKASAELRRTQAELRVTQmERDDAVTEVEILKEKLDKALYASQKLIdekdtsnkEFEKMLEKYDRAQNEI 652
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALQ-ERREALQRLAEYSWDEIDVASAEREIA--------ELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 653 YRLQSRCDTAEADRARLEVEAErsglaasKAREDLRKLQDESTRLQEACDRAALQLSRA-KECEDNARSELE-------- 723
Cdd:COG4913 688 AALEEQLEELEAELEELEEELD-------ELKGEIGRLEKELEQAEEELDELQDRLEAAeDLARLELRALLEerfaaalg 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 724 --HSRDRFDKLQTDIRRAQGEKEHFQSELERVtyeLERAHAAQTKASASVEAAKEEAAHYAVELEKMRD----RYEKSQV 797
Cdd:COG4913 761 daVERELRENLEERIDALRARLNRAEEELERA---MRAFNREWPAETADLDADLESLPEYLALLDRLEEdglpEYEERFK 837
|
250 260 270
....*....|....*....|....*....|
gi 442623018 798 ELRKLQDTDTFGRETRRLKEENERLREKLD 827
Cdd:COG4913 838 ELLNENSIEFVADLLSKLRRAIREIKERID 867
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
297-778 |
3.92e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 297 QEILAMAAKMKTLEEQHQDYQRHIAVLKEslcaKEEHYNMLQTDVEEMRARLEEKNRLIEKktQGTLQTVQERNRLTSEL 376
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEE----LEEELEELEAELEELREELEKLEKLLQL--LPLYQELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 377 TELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAmqahhsSSEGALTSLEEAIGDKEKQMAQLRDQRDRA 456
Cdd:COG4717 145 PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSL------ATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 457 ehekQEERDLHEREVADYKIKLRAAEsEVEKLQTRLERAVTERERLEikLEASQSELGKSKAELEKATCEMGRSSADWES 536
Cdd:COG4717 219 ----QEELEELEEELEQLENELEAAA-LEERLKEARLLLLIAAALLA--LLGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 537 TKQRIARLELENERLKHDLERSQVLTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVEILKEK 616
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 617 LdKALYASQKLIDEKdtsnkEFEKMLEKYDRAQNEiyrlqsrcdTAEADRARLEVEAERSGLAASKAREDLRKLQDESTR 696
Cdd:COG4717 372 I-AALLAEAGVEDEE-----ELRAALEQAEEYQEL---------KEELEELEEQLEELLGELEELLEALDEEELEEELEE 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 697 LQEACDRAALQLSRAKECEDNARSELEHSRDrfdklQTDIRRAQGEKEHFQSELErvtyELERAHAAQTKASASVEAAKE 776
Cdd:COG4717 437 LEEELEELEEELEELREELAELEAELEQLEE-----DGELAELLQELEELKAELR----ELAEEWAALKLALELLEEARE 507
|
..
gi 442623018 777 EA 778
Cdd:COG4717 508 EY 509
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
292-917 |
3.92e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.93 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 292 IQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEE-KNRLIEKKTQgtlqtvqeRN 370
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDlNDKLKKNKDK--------IN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 371 RLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSamqahhsSSEGALTSLEEAIGDKEKQMAQLR 450
Cdd:TIGR04523 100 KLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIK-------KKEKELEKLNNKYNDLKKQKEELE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 451 DQRDRAEHEKQEErdlhEREVADYKIKLRAAESEVEKLQTRLERavteRERLEIKLEASQSELGKSKAELEKATCEMGRS 530
Cdd:TIGR04523 173 NELNLLEKEKLNI----QKNIDKIKNKLLKLELLLSNLKKKIQK----NKSLESQISELKKQNNQLKDNIEKKQQEINEK 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 531 SADWESTKQRIARLELENERLKHDLERSQvlttfgrttmttsQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEV 610
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDEQNKIKKQLSEKQ-------------KELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKE 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 611 eiLKEKLdkalyasQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKL 690
Cdd:TIGR04523 312 --LKSEL-------KNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSY 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 691 QDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKASAS 770
Cdd:TIGR04523 383 KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 771 VEAAKEEAAHYAVELEKMRDRYEKSQVEL-RKLQDTDTFGRETRRLKEENERLREKLD------------KTLMELETIR 837
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELkSKEKELKKLNEEKKELEEKVKDLTKKISslkekiekleseKKEKESKISD 542
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 838 GKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEV 917
Cdd:TIGR04523 543 LEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
464-749 |
3.94e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 464 RDLHER---EVADYKIKLRAAE-SEVEKLQTRLERAVtererleIKLEASQSELGKSKAELEKATCE-----MGRSSADW 534
Cdd:PRK05771 23 EALHELgvvHIEDLKEELSNERlRKLRSLLTKLSEAL-------DKLRSYLPKLNPLREEKKKVSVKsleelIKDVEEEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 535 E-------STKQRIARLELENERLKHDLERSQVLttfgrttmtTSQELD----RAQERADKASAELRRTQAElrvtQMER 603
Cdd:PRK05771 96 EkiekeikELEEEISELENEIKELEQEIERLEPW---------GNFDLDlsllLGFKYVSVFVGTVPEDKLE----ELKL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 604 DDAVTEVEILKEKLDKALYAsqkLIDEKDTSnKEFEKMLEKYDRAQNEIYrlqsrcDTAEADRARLEVEAERSGLAA--S 681
Cdd:PRK05771 163 ESDVENVEYISTDKGYVYVV---VVVLKELS-DEVEEELKKLGFERLELE------EEGTPSELIREIKEELEEIEKerE 232
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442623018 682 KAREDLRKLQDESTRLQEACDRAALQLS-RAKECEDNARSELEHS------RDRFDKLQTDIRRAQGEKEHFQSE 749
Cdd:PRK05771 233 SLLEELKELAKKYLEELLALYEYLEIELeRAEALSKFLKTDKTFAiegwvpEDRVKKLKELIDKATGGSAYVEFV 307
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
221-619 |
3.99e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 221 LQREISILRETIKDLECRVETQKQtliaRDEsIKKLLE----MLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRD 296
Cdd:PRK04863 232 FQDMEAALRENRMTLEAIRVTQSD----RDL-FKHLITestnYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQ 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 297 QEILAMAAKM-------KTLEEQHQDYQRHIAVLKESLCA--KEEHYnmlQTDVEEMRARLEEKNRLIEKKTQGTL---- 363
Cdd:PRK04863 307 YRLVEMARELaelneaeSDLEQDYQAASDHLNLVQTALRQqeKIERY---QADLEELEERLEEQNEVVEEADEQQEenea 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 364 ---QTVQERNRLTSELTELKDHMDIKDRK-------ISVLQR----------KIENLEDLL-------KEKDNQVDMARA 416
Cdd:PRK04863 384 raeAAEEEVDELKSQLADYQQALDVQQTRaiqyqqaVQALERakqlcglpdlTADNAEDWLeefqakeQEATEELLSLEQ 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 417 RLSAMQAHHSSSEGALTSLEEAIGDKEKQMA---------QLRDQRDRAEHEKQEERDLHEREvadykiKLRAAESEVEK 487
Cdd:PRK04863 464 KLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAwdvarellrRLREQRHLAEQLQQLRMRLSELE------QRLRQQQRAER 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 488 LQTRLERAVTERERLEIKLEASQSELGkskAELEKATCEMGRSSADWESTKQRIARLELENERLKhdlERSQVLTTFGRT 567
Cdd:PRK04863 538 LLAEFCKRLGKNLDDEDELEQLQEELE---ARLESLSESVSEARERRMALRQQLEQLQARIQRLA---ARAPAWLAAQDA 611
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 442623018 568 TMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVEILKEKLDK 619
Cdd:PRK04863 612 LARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIER 663
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
678-929 |
4.46e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 678 LAASKAREDLRKLQDESTRLqeacDRAALQLSRAKECEDnARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYEL 757
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDL----ERAHEALEDAREQIE-LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 758 ERAHAAQTKASASVEAAKEEAAhyAVELEKMRDRYEKSQVELRKLQdtdtfGRETRRLKEENERLREKLDKTLMELetir 837
Cdd:COG4913 293 LEAELEELRAELARLEAELERL--EARLDALREELDELEAQIRGNG-----GDRLEQLEREIERLERELEERERRR---- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 838 gksqyesesfEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAhieREKARDKHEKLLKEV 917
Cdd:COG4913 362 ----------ARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAA---LRDLRRELRELEAEI 428
|
250
....*....|..
gi 442623018 918 DRLRLQQSSVSP 929
Cdd:COG4913 429 ASLERRKSNIPA 440
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
480-713 |
6.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 480 AAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQ 559
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 560 vlttfgrttMTTSQELDRAQERADKASAELRRTQAELRVTQMERDDAVTEVEILK---EKLDKALYASQKLIDEKDTSNK 636
Cdd:COG4942 97 ---------AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKylaPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442623018 637 EFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSglaASKAREDLRKLQDESTRLQEACDRAALQLSRAKE 713
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKE---LAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
759-917 |
6.78e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 759 RAHAAQTKASASVEAAKEEAAHYAVELE-KMRDRYE--KSQVELRKLQDTDTFGRETRRLKEENERLREK---LDKTLME 832
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALlEAKEEIHklRNEFEKELRERRNELQKLEKRLLQKEENLDRKlelLEKREEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 833 LETIRGKSQYESESFEKYKDKYEKIEMEVQNmesKLHETSlqlELSKGEVAKMLANQEKQRSELERAHIER---EKARDK 909
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQ---ELERIS---GLTAEEAKEILLEKVEEEARHEAAVLIKeieEEAKEE 185
|
....*...
gi 442623018 910 HEKLLKEV 917
Cdd:PRK12704 186 ADKKAKEI 193
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
677-907 |
7.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 7.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 677 GLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAqgekehfQSELERVTYE 756
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL-------EQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 757 LERAHAAQTKASASVEAAKEEAAHYAVELEKM-RDRYEKSQVELRKLQDTDTFGRETRRLKEENERLREKLDKTLMELET 835
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 442623018 836 IRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELER--AHIEREKAR 907
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAliARLEAEAAA 238
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
372-494 |
8.58e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 8.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 372 LTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEkdnqvdmararlsaMQAHHSSSEGALTSLEEAIGDKEKQMAQLRD 451
Cdd:COG2433 390 LPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER--------------LEAEVEELEAELEEKDERIERLERELSEARS 455
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 442623018 452 QRdRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLER 494
Cdd:COG2433 456 EE-RREIRKDREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
341-1101 |
9.24e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 341 VEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENL---------------EDLLK 405
Cdd:pfam15921 87 VKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQlqntvheleaakclkEDMLE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 406 EKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKekqmaqlrdqrdraEHEKQEERDLHEREVADYKIK-LRAAESE 484
Cdd:pfam15921 167 DSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK--------------IYEHDSMSTMHFRSLGSAISKiLRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 485 VEKLQTRLeravterERLEIKLEASQSElGKSKAELEkatcemgrssadWESTKQRIARLELENERLKHDLERSQVLTTF 564
Cdd:pfam15921 233 ISYLKGRI-------FPVEDQLEALKSE-SQNKIELL------------LQQHQDRIEQLISEHEVEITGLTEKASSARS 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 565 GRTTMTTSQELDRAQERADKASAELRRTQAELRVTQM--ERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEK-- 640
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLrsELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQes 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 641 --MLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQeacdraALQLSRAKECEDNA 718
Cdd:pfam15921 373 gnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLE------ALLKAMKSECQGQM 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 719 RSEL---EHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYE---LERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRY 792
Cdd:pfam15921 447 ERQMaaiQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKkmtLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 793 EksqVELRKLQDTDTFGRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETS 872
Cdd:pfam15921 527 D---LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR 603
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 873 LQLELSK----------GEVAKMLANQEKQRSELERAHIEREKA----RDKHEKLLKEVDRLRLQQSSVSPGDPVrasts 938
Cdd:pfam15921 604 LELQEFKilkdkkdakiRELEARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEV----- 678
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 939 sSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTEstriefERMGAELGRLHDRLEKAE 1018
Cdd:pfam15921 679 -LKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQ------KQITAKRGQIDALQSKIQ 751
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442623018 1019 AEREALRQANRSGGAGAAPHPQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAE-------LQKTR 1091
Cdd:pfam15921 752 FLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQfaecqdiIQRQE 831
|
810
....*....|
gi 442623018 1092 EENRKLRNGH 1101
Cdd:pfam15921 832 QESVRLKLQH 841
|
|
| |
