|
Name |
Accession |
Description |
Interval |
E-value |
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
406-1032 |
7.12e-21 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 99.48 E-value: 7.12e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 406 TERLEAETAERL-KLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDgvgggvyKLKYERVARELEF 484
Cdd:pfam01576 424 SERQRAELAEKLsKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQ-------KLNLSTRLRQLED 496
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 485 TKRRLHTQHEHDLEQLVALKKH---LEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQR 561
Cdd:pfam01576 497 ERNSLQEQLEEEEEAKRNVERQlstLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKN 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 562 KFDAECQSLQDAVRQERQ---AKERYGREKDVLQAEKFTLEQTLADTRLDLEF----KEEKLASLQRELEEMTfggGTEE 634
Cdd:pfam01576 577 RLQQELDDLLVDLDHQRQlvsNLEKKQKKFDQMLAEEKAISARYAEERDRAEAeareKETRALSLARALEEAL---EAKE 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 635 EFA-------------------------QLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRES 689
Cdd:pfam01576 654 ELErtnkqlraemedlvsskddvgknvhELERSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERDL 733
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 690 QQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDR-DRVDRDAEEALNQklrrdLRKYKALLK 768
Cdd:pfam01576 734 QARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQiDAANKGREEAVKQ-----LKKLQAQMK 808
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 769 DAQTQLERLKADTpgktliRQLRNQLEDAEsarslamKARQTAEAELTEVQAMFDESHRARNDAEEranaahrDRAELQA 848
Cdd:pfam01576 809 DLQRELEEARASR------DEILAQSKESE-------KKLKNLEAELLQLQEDLAASERARRQAQQ-------ERDELAD 868
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 849 QIEENEeelgelmKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLD--NVENLGDPSMAMMS----K 922
Cdd:pfam01576 869 EIASGA-------SGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEqlTTELAAERSTSQKSesarQ 941
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 923 RLELRTKELESRL-ELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDM-----REEFHAVSS 996
Cdd:pfam01576 942 QLERQNKELKAKLqEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRERQAANKLVRRTEKKLKEVllqveDERRHADQY 1021
|
650 660 670
....*....|....*....|....*....|....*...
gi 442619364 997 REQ--ESLTRRKDLEKKVEQMESEgAALKNDLRLALQR 1032
Cdd:pfam01576 1022 KDQaeKGNSRMKQLKRQLEEAEEE-ASRANAARRKLQR 1058
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
528-1069 |
3.49e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.38 E-value: 3.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 528 WKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRL 607
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 608 DLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARR 687
Cdd:COG1196 310 RRRELEERLEELEEELAE------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 688 ESQQRDEELEEVRgNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALL 767
Cdd:COG1196 384 LAEELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 768 KDAQTQLERLKAdtpGKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRAR----------------ND 831
Cdd:COG1196 463 ELLAELLEEAAL---LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaayeAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 832 AEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNT-EQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVE 910
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKiRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 911 NLgdpsmammSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREE 990
Cdd:COG1196 620 DT--------LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442619364 991 FHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQAMEEEGEEELSESDESLSSVGSISDLEDRLR 1069
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
472-1022 |
1.78e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.07 E-value: 1.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 472 KLKYERVARELEFTKRRLHtQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQvvgqwkrKAQKMTNEMNDLRMLLEEQNA 551
Cdd:COG1196 217 ELKEELKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAELAELEA-------ELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 552 RNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfggg 631
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE------ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 632 TEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGyKKIKALE 711
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE-EEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 712 CQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLR 791
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 792 NQLE-------------DAESARSLAMKARQTAEAELTEVQAMFDESHRA--------RNDAEERANAAHRDRAELQAQI 850
Cdd:COG1196 522 LAGAvavligveaayeaALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 851 EENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMS------KRL 924
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAalleaeAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 925 ELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTR 1004
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
570
....*....|....*...
gi 442619364 1005 RKDLEKKVEQMESEGAAL 1022
Cdd:COG1196 762 LEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
381-1038 |
1.39e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 1.39e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 381 IREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDA 460
Cdd:TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 461 ENEDGVGGGVYKLKYERVARELEFTKRRLHTQHE---HDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTN 537
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELEsleAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 538 EMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKdvLQAEKFTLEQTLADTRLDLEFKEEKLA 617
Cdd:TIGR02168 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE--LQEELERLEEALEELREELEEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 618 SLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETM-----------RKEAR 686
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAlggrlqavvveNLNAA 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 687 RESQQRDEELE-------EVRGNGYKKIKALECQLETEHEERTLLLRE----KHELERRLSSMEDRDRVDRDAEEALNQ- 754
Cdd:TIGR02168 559 KKAIAFLKQNElgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDlvkfDPKLRKALSYLLGGVLVVDDLDNALELa 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 755 -KLRRDLR---------------------------KYKALLKDAQTQLERLKAD-TPGKTLIRQLRNQLEDAESARSLAM 805
Cdd:TIGR02168 639 kKLRPGYRivtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKiAELEKALAELRKELEELEEELEQLR 718
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 806 KARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNT--EQINVSEAEF 883
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEleAQIEQLKEEL 798
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 884 K-----LNEMEAERNNLKEQVAELQHRLDNVENlgdpSMAMMSKRLElrtkELESRLELEQATRARLEVQVNRHKEALEK 958
Cdd:TIGR02168 799 KalreaLDELRAELTLLNEEAANLRERLESLER----RIAATERRLE----DLEEQIEELSEDIESLAAEIEELEELIEE 870
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 959 LQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1038
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
404-1068 |
4.06e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.96 E-value: 4.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 404 IATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEmelicaksdlNGISEDEDAENEdgvgggVYKLKYERVARELE 483
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREYEGYELLKEKEALERQKE----------AIERQLASLEEE------LEKLTEEISELEKR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 484 ftkrrlhtqhehdLEQLVALKKHLEMKLSDAYEEvvEQRQVvgqwKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKF 563
Cdd:TIGR02169 267 -------------LEEIEQLLEELNKKIKDLGEE--EQLRV----KEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 564 DAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMtfgggtEEEFAQLRRSK 643
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDY------REKLEKLKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 644 NETER-------RAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEArRESQQRDEELEEVRGNGYKKIKALECQLET 716
Cdd:TIGR02169 402 NELKReldrlqeELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEI-KKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 717 EHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLR------RDLRKYKALLK--------------------DA 770
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvAQLGSVGERYAtaievaagnrlnnvvveddaVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 771 QTQLERLKADTPGK------TLIRQLRNQL------------------------------------EDAESARSLAMKAR 808
Cdd:TIGR02169 561 KEAIELLKRRKAGRatflplNKMRDERRDLsilsedgvigfavdlvefdpkyepafkyvfgdtlvvEDIEAARRLMGKYR 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 809 Q-TAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNE 887
Cdd:TIGR02169 641 MvTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 888 MEAERNNLKEQVAELQHRLdnvenlgdpsmammsKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVtqSK 967
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKERL---------------EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL--ND 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 968 MREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQAMEEEGEEE 1047
Cdd:TIGR02169 784 LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKK 863
|
730 740
....*....|....*....|.
gi 442619364 1048 LSESDESLSSVGSISDLEDRL 1068
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRL 884
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
387-946 |
5.93e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 5.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 387 ELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDgv 466
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER-- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 467 gggvyKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKhlemKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLL 546
Cdd:COG1196 311 -----RRELEERLEELEEELAELEEELEELEEELEELEE----ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 547 EEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEm 626
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA- 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 627 tfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQR-DEELEEVRGNGYK 705
Cdd:COG1196 461 -----LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlAGAVAVLIGVEAA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 706 KIKALE------CQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKA 779
Cdd:COG1196 536 YEAALEaalaaaLQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 780 DTPGKTLIrqLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGE 859
Cdd:COG1196 616 YVLGDTLL--GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 860 LMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQ 939
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
....*..
gi 442619364 940 ATRARLE 946
Cdd:COG1196 774 REIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
577-1034 |
3.78e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 3.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 577 ERQAK--ERYgrekDVLQAEKFTLEQTLAdtRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQE 654
Cdd:COG1196 206 ERQAEkaERY----RELKEELKELEAELL--LLKLRELEAELEELEAELEE------LEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 655 EELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQR---DEELEEVRgngyKKIKALECQLETEHEERTLLLREKHEL 731
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRrelEERLEELE----EELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 732 ERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADtpgKTLIRQLRNQLEDAESARSLAMKARQTA 811
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL---AAQLEELEEAEEALLERLERLEEELEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 812 EAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEeneeelgelmkkysATVKQLNTEQINVSEAEFKLNEMEAE 891
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA--------------ELLEEAALLEAALAELLEELAEAAAR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 892 RNNLKEQVAELQHRLDNV-ENLGDPSMAMMSKRL-ELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMR 969
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVkAALLLAGLRGLAGAVaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442619364 970 EMQAQ--DVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIA 1034
Cdd:COG1196 573 RATFLplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
541-914 |
2.02e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.09 E-value: 2.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 541 DLRMLLEEQ------NARNNLLEKKQRKFDAECQSLQDAVRQ--------ERQAK--ERYGRekdvLQAEKFTLEQTLAd 604
Cdd:TIGR02168 156 ERRAIFEEAagiskyKERRKETERKLERTRENLDRLEDILNElerqlkslERQAEkaERYKE----LKAELRELELALL- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 605 tRLDLEFKEEKLASLQRELEEMtfgggteeefaqlRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKE 684
Cdd:TIGR02168 231 -VLRLEELREELEELQEELKEA-------------EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 685 ARRESQQRdEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEdrdrVDRDAEEALNQKLRRDLRKYK 764
Cdd:TIGR02168 297 ISRLEQQK-QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK----EELESLEAELEELEAELEELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 765 ALLKDAQTQLERLKADtpgktlIRQLRNQLEdaesarsLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAhrDRA 844
Cdd:TIGR02168 372 SRLEELEEQLETLRSK------VAQLELQIA-------SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELK 436
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 845 ELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGD 914
Cdd:TIGR02168 437 ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
726-1038 |
4.90e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 4.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 726 REKHELERRLSSMEDRDRVDRDAEEALNQkLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAE-----SA 800
Cdd:TIGR02169 153 VERRKIIDEIAGVAEFDRKKEKALEELEE-VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEgyellKE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 801 RSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVK--------QLN 872
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaeiaslerSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 873 TEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLELRtKELESRLELEQATRARLEVQVNRH 952
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL-EDLRAELEEVDKEFAETRDELKDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 953 KEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQR 1032
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
....*.
gi 442619364 1033 IADLQQ 1038
Cdd:TIGR02169 471 LYDLKE 476
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
416-776 |
7.21e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 7.21e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 416 RLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDGvgggvyklkyERVARELEFTKRRLhTQHEH 495
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL----------EELSRQISALRKDL-ARLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 496 DLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVR 575
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 576 QERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEE 655
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL------ESELEALLNERASLEEALALLRS 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 656 ELDEMAGQIQlleqaklrlemTLETMRKEARRESQQRDEELEEVRgNGYKKIKALECQLE---TEHEERTLLLREKHELE 732
Cdd:TIGR02168 895 ELEELSEELR-----------ELESKRSELRRELEELREKLAQLE-LRLEGLEVRIDNLQerlSEEYSLTLEEAEALENK 962
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 442619364 733 RRLSSMEDRDRVDR-------------DAEEAL-NQKLRRD-LRKYKALLKDAQTQLER 776
Cdd:TIGR02168 963 IEDDEEEARRRLKRlenkikelgpvnlAAIEEYeELKERYDfLTAQKEDLTEAKETLEE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
476-1040 |
8.05e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 8.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 476 ERVARELEFTKRRLHTQHE-----HDL-EQLVALKKHLE-MKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEE 548
Cdd:TIGR02168 192 EDILNELERQLKSLERQAEkaeryKELkAELRELELALLvLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 549 QNARNNLLEKKQRKFDAECQSLQ----DAVRQERQAKER---YGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQR 621
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALAneisRLEQQKQILRERlanLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 622 ELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRG 701
Cdd:TIGR02168 352 ELESL------EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 702 NGYK----KIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVdrdAEEALnQKLRRDLRKYKALLKDAQTQLERL 777
Cdd:TIGR02168 426 LLKKleeaELKELQAELEELEEELEELQEELERLEEALEELREELEE---AEQAL-DAAERELAQLQARLDSLERLQENL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 778 KADTPGKTLIRQLRNQL--------------EDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERA------- 836
Cdd:TIGR02168 502 EGFSEGVKALLKNQSGLsgilgvlselisvdEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTflpldsi 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 837 -----NAAHRDRAELQAQIEENEEELGELMKKYSATV--------------------KQLNTEQINVS------------ 879
Cdd:TIGR02168 582 kgteiQGNDREILKNIEGFLGVAKDLVKFDPKLRKALsyllggvlvvddldnalelaKKLRPGYRIVTldgdlvrpggvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 880 -------------------EAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDP-------------SMAMMSKRLELR 927
Cdd:TIGR02168 662 tggsaktnssilerrreieELEEKIEELEEKIAELEKALAELRKELEELEEELEQlrkeleelsrqisALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 928 TKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKD 1007
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
650 660 670
....*....|....*....|....*....|...
gi 442619364 1008 LEKKVEQMESEGAALKNDLRLALQRIADLQQAM 1040
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
381-1018 |
1.72e-12 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 72.13 E-value: 1.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 381 IREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETT-------EKLEMELICAKSDLNG 453
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDIllledqnSKLSKERKLLEERISE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 454 ISEDEDAENEDGVGGGVYKLKYERVARELEFTKRRlhtqHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQ 533
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKK----EEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 534 KMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREK----DVLQAEKFTLEQTLADTRLDL 609
Cdd:pfam01576 240 KKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRrdlgEELEALKTELEDTLDTTAAQQ 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 610 EFK---EEKLASLQRELEEMTfgGGTEEEFAQLRRSKNETerrakeqeeeLDEMAGQIQLLEQAKLRLEMTLETMRKEaR 686
Cdd:pfam01576 320 ELRskrEQEVTELKKALEEET--RSHEAQLQEMRQKHTQA----------LEELTEQLEQAKRNKANLEKAKQALESE-N 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 687 RESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDR-DRVDRDAEEALNQ--KLRRDLRKY 763
Cdd:pfam01576 387 AELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSElESVSSLLNEAEGKniKLSKDVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 764 KALLKDAQTQL-ERLKADTPGKTLIRQ-------LRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEER 835
Cdd:pfam01576 467 ESQLQDTQELLqEETRQKLNLSTRLRQledernsLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEG 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 836 ANAAHRDRAELQAQIEENEEELGELMKKYS--------ATVKQLNTEQI--NVSEAEFKLNEMEAERNNLKEQVAELQHR 905
Cdd:pfam01576 547 KKRLQRELEALTQQLEEKAAAYDKLEKTKNrlqqelddLLVDLDHQRQLvsNLEKKQKKFDQMLAEEKAISARYAEERDR 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 906 LDNVENLGDPSMAMMSKRLELRT---KELE----------------------SRLELEQATRArLEVQVNRHKEALEKLQ 960
Cdd:pfam01576 627 AEAEAREKETRALSLARALEEALeakEELErtnkqlraemedlvsskddvgkNVHELERSKRA-LEQQVEEMKTQLEELE 705
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 442619364 961 NEVTqskmremQAQDVIKKSQKSLRDMREEF-HAVSSREQESLTRRKDLEKKVEQMESE 1018
Cdd:pfam01576 706 DELQ-------ATEDAKLRLEVNMQALKAQFeRDLQARDEQGEEKRRQLVKQVRELEAE 757
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
643-991 |
5.29e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 5.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 643 KNETERRAKEQEEELD-------EMAGQIQLLE-QAKL------------RLEMTLETMR-KEARRESQQRDEELEEVRg 701
Cdd:TIGR02168 174 RKETERKLERTRENLDrledilnELERQLKSLErQAEKaerykelkaelrELELALLVLRlEELREELEELQEELKEAE- 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 702 ngyKKIKALECQLETEHEERTLLLREKHELERRLssmedrdrvdrdaeealnQKLRRDLRKYKALLKDAQTQLERLKADt 781
Cdd:TIGR02168 253 ---EELEELTAELQELEEKLEELRLEVSELEEEI------------------EELQKELYALANEISRLEQQKQILRER- 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 782 pgktlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELM 861
Cdd:TIGR02168 311 -----LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 862 KKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDnvenlgdpsmammskrlELRTKELESRLELEQAT 941
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE-----------------EAELKELQAELEELEEE 448
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 442619364 942 RARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQ---KSLRDMREEF 991
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarlDSLERLQENL 501
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
546-1026 |
1.62e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.55 E-value: 1.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 546 LEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYG---REKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRE 622
Cdd:PRK03918 202 LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEeleKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 623 LEEMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMR--KEARRESQQRDEELEEvR 700
Cdd:PRK03918 282 VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEelKKKLKELEKRLEELEE-R 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 701 GNGYKKIKALECQLETEHEERTLLlrEKHELERRLSSMEDRDRVDRDAEEALNQKLRRdLRKYKALLKDAQTQLERLKAD 780
Cdd:PRK03918 361 HELYEEAKAKKEELERLKKRLTGL--TPEKLEKELEELEKAKEEIEEEISKITARIGE-LKKEIKELKKAIEELKKAKGK 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 781 TP----------GKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRAR---------NDAEERANAAHR 841
Cdd:PRK03918 438 CPvcgrelteehRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIklkelaeqlKELEEKLKKYNL 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 842 DRAELQAQIEENEEELGELMKKysaTVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLdnvENLGDPSMAMMS 921
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKG---EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKEL---EELGFESVEELE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 922 KRLE---------LRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDviKKSQKSLRDMREEFH 992
Cdd:PRK03918 592 ERLKelepfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK--KYSEEEYEELREEYL 669
|
490 500 510
....*....|....*....|....*....|....
gi 442619364 993 AVSSREQESLTRRKDLEKKVEQMESEGAALKNDL 1026
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
491-1027 |
2.42e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.06 E-value: 2.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 491 TQHEHDLEQLVALK---KHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAEC 567
Cdd:PRK02224 244 EEHEERREELETLEaeiEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 568 QSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETE 647
Cdd:PRK02224 324 EELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVED------RREEIEELEEEIEELR 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 648 RRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEaRRESQQRDEELEEVRGNGykkiKALECQLETEHEERTLLLRE 727
Cdd:PRK02224 398 ERFGDAPVDLGNAEDFLEELREERDELREREAELEAT-LRTARERVEEAEALLEAG----KCPECGQPVEGSPHVETIEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 728 KHElerRLSSMEDRDRVDRDAEEALNQKLRRdlrkyKALLKDAQTQLERL--KADTPGKtLIRQLRNQLEDAESARSLAM 805
Cdd:PRK02224 473 DRE---RVEELEAELEDLEEEVEEVEERLER-----AEDLVEAEDRIERLeeRREDLEE-LIAERRETIEEKRERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 806 KARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIeeneeelgelmkkysatvkqlnteqinvsEAEFKL 885
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI-----------------------------ESLERI 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 886 NEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLElRTKELESRLELEQATRARLEVQvnRHKEALEKLQNEVTQ 965
Cdd:PRK02224 595 RTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE-RKRELEAEFDEARIEEAREDKE--RAEEYLEQVEEKLDE 671
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442619364 966 SKMREMQAQDVI---KKSQKSLRDMREEFHAVSSREQesltRRKDLEKKVEQMESEGAALKNDLR 1027
Cdd:PRK02224 672 LREERDDLQAEIgavENELEELEELRERREALENRVE----ALEALYDEAEELESMYGDLRAELR 732
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
510-958 |
3.42e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 64.02 E-value: 3.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 510 KLSDAYEEVVEQRQVVGQWKRKaqkmTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQsLQDAVRQERQAKERYGREKD 589
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAEL----QEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 590 VLQAEKFTLEQtLADTRLDLEFKEEKLASLQRELEE--MTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLL 667
Cdd:COG4717 147 RLEELEERLEE-LRELEEELEELEAELAELQEELEEllEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 668 EQAKLRLEMTLETMRKEARRESQQR-----------DEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLS 736
Cdd:COG4717 226 EEELEQLENELEAAALEERLKEARLllliaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 737 SMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKAdtpgktlIRQLRNQLEDAESARSLAmKARQTAEAELT 816
Cdd:COG4717 306 ELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEE-------LQELLREAEELEEELQLE-ELEQEIAALLA 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 817 EVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATvkQLNTEqinVSEAEFKLNEMEAERNNLK 896
Cdd:COG4717 378 EAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEE---LEELEEELEELEEELEELR 452
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442619364 897 EQVAELQHRLDNVENLGDPSMAmmskRLELRTKELESRLELEQATRARLEVQV-NRHKEALEK 958
Cdd:COG4717 453 EELAELEAELEQLEEDGELAEL----LQELEELKAELRELAEEWAALKLALELlEEAREEYRE 511
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
549-1038 |
7.71e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.16 E-value: 7.71e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 549 QNARNNLLEKKqRKFDAECQSLQDAVRQERQAKERYGREKDvlqaEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMTf 628
Cdd:PRK03918 161 ENAYKNLGEVI-KEIKRRIERLEKFIKRTENIEELIKEKEK----ELEEVLREINEISSELPELREELEKLEKEVKELE- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 629 ggGTEEEFAQLRRSKNETERRAKEQEEELDEmagqiqlleqaklrlemtletmRKEARRESQQRDEELEEVRGNgYKKIK 708
Cdd:PRK03918 235 --ELKEEIEELEKELESLEGSKRKLEEKIRE----------------------LEERIEELKKEIEELEEKVKE-LKELK 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 709 ALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRdLRKYKALLKDAQTQLERLKADTPGKTLIR 788
Cdd:PRK03918 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER-LEELKKKLKELEKRLEELEERHELYEEAK 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 789 QLRNQLEDAESarSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEE---------------N 853
Cdd:PRK03918 369 AKKEELERLKK--RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcgrelT 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 854 EEELGELMKKYSATVKQLNTEQINVSEAEFKLN----EMEAERNN---------LKEQVAELQHRLD--NVENLGDPS-- 916
Cdd:PRK03918 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRkelrELEKVLKKeseliklkeLAEQLKELEEKLKkyNLEELEKKAee 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 917 ---MAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHA 993
Cdd:PRK03918 527 yekLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE 606
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 442619364 994 VSSREQE---SLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1038
Cdd:PRK03918 607 LKDAEKElerEEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
759-1081 |
8.35e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 8.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 759 DLRKYKAL--LKDAQTQLERLKAdtpgktLIRQLRNQL-------EDAESARSLAMKARQtAEAELT-----EVQAMFDE 824
Cdd:COG1196 171 KERKEEAErkLEATEENLERLED------ILGELERQLeplerqaEKAERYRELKEELKE-LEAELLllklrELEAELEE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 825 SHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQH 904
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 905 RLDNVENlgdpSMAMMSKRLELRTKEL---ESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQ 981
Cdd:COG1196 324 ELAELEE----ELEELEEELEELEEELeeaEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 982 KSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQAMEEEGEEELSESDESLSSVGSI 1061
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340
....*....|....*....|
gi 442619364 1062 SDLEDRLRPVHVKRSSQQSL 1081
Cdd:COG1196 480 AELLEELAEAAARLLLLLEA 499
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
521-1035 |
1.59e-09 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 62.55 E-value: 1.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 521 QRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQR----KFDAECQSLQDAVRQERQaKERYGREKDVLQAEKF 596
Cdd:pfam12128 219 NRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLESAELRlshlHFGYKSDETLIASRQEER-QETSAELNQLLRTLDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 597 TLEQTLADTRLDLEFKEEKLASLQRELEEMTfgggteeefAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEM 676
Cdd:pfam12128 298 QWKEKRDELNGELSAADAAVAKDRSELEALE---------DQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTG 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 677 TLETMRKEARRESQQRDEELEevrgngyKKIKALECQLETEHEERTLLLRekhelerrlssmedrdrVDRDAEEALNQKL 756
Cdd:pfam12128 369 KHQDVTAKYNRRRSKIKEQNN-------RDIAGIKDKLAKIREARDRQLA-----------------VAEDDLQALESEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 757 RRDLRKYKALLKDAQTQLE--------RLKADTPGKTLIRQLRN---QLEDAESARSLAMKARQTAEAELTEVQAMFDES 825
Cdd:pfam12128 425 REQLEAGKLEFNEEEYRLKsrlgelklRLNQATATPELLLQLENfdeRIERAREEQEAANAEVERLQSELRQARKRRDQA 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 826 HRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQ-----LNTEQINVSEAEFKLNEMEAERNNlkeQVA 900
Cdd:pfam12128 505 SEALRQASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQsigkvISPELLHRTDLDPEVWDGSVGGEL---NLY 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 901 ELQHRLDNVENlgdPSMAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTqskmremQAQDVIKKS 980
Cdd:pfam12128 582 GVKLDLKRIDV---PEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREET-------FARTALKNA 651
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 442619364 981 QKSLRDMREEFHAVSSREQESLTRRKDL-EKKVEQMESEGAALKNDLRLALQRIAD 1035
Cdd:pfam12128 652 RLDLRRLFDEKQSEKDKKNKALAERKDSaNERLNSLEAQLKQLDKKHQAWLEEQKE 707
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
499-1021 |
4.38e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 60.96 E-value: 4.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 499 QLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQER 578
Cdd:pfam01576 65 RLAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLE 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 579 QAKERygrekdvLQAEKFTLEQTLADTRLDLEFKEEKLASLQreleemtfgggteeefaqlrRSKNETERRAKEQEEELD 658
Cdd:pfam01576 145 DQNSK-------LSKERKLLEERISEFTSNLAEEEEKAKSLS--------------------KLKNKHEAMISDLEERLK 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 659 EMAGQIQLLEQAKLRLEMTLETMRkEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 738
Cdd:pfam01576 198 KEEKGRQELEKAKRKLEGESTDLQ-EQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISEL 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 739 E---DRDRVDRDAEEALNQKLRRDLRKYKALLKD-----AQTQLERLKADTPGKTLIRQLRnqlEDAESARSLAMKARQT 810
Cdd:pfam01576 277 QedlESERAARNKAEKQRRDLGEELEALKTELEDtldttAAQQELRSKREQEVTELKKALE---EETRSHEAQLQEMRQK 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 811 AEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNteqinvsEAEFKLNEMEA 890
Cdd:pfam01576 354 HTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQ-------ELQARLSESER 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 891 ERNNLKEQVAELQHRLDNVENLGDPSMAMMSKrLELRTKELESRLE-----LEQATRARLEV-----QVNRHKEAL-EKL 959
Cdd:pfam01576 427 QRAELAEKLSKLQSELESVSSLLNEAEGKNIK-LSKDVSSLESQLQdtqelLQEETRQKLNLstrlrQLEDERNSLqEQL 505
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442619364 960 QNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAA 1021
Cdd:pfam01576 506 EEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAA 567
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
762-1038 |
4.55e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 762 KYKALLKDAQTQLERLKAD-TPGKTLIRQLRNQLEDAESARSLAMKARQTaEAELTEVQAMFdeshrarndAEERANAAH 840
Cdd:TIGR02168 169 KYKERRKETERKLERTRENlDRLEDILNELERQLKSLERQAEKAERYKEL-KAELRELELAL---------LVLRLEELR 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 841 RDRAELQAQIEeneeelgelmkkysATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdpsmamm 920
Cdd:TIGR02168 239 EELEELQEELK--------------EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE-------- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 921 SKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQE 1000
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
250 260 270
....*....|....*....|....*....|....*...
gi 442619364 1001 SLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1038
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
544-974 |
6.78e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.78 E-value: 6.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 544 MLLEEQNARNNLLEKKQRK----FDAECQSLQDAVRQERQAKERYGRekdvLQAEKFTLEQTLADTRLDLEFKEEKLASL 619
Cdd:COG4717 46 MLLERLEKEADELFKPQGRkpelNLKELKELEEELKEAEEKEEEYAE----LQEELEELEEELEELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 620 QRELEemtfGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEV 699
Cdd:COG4717 122 EKLLQ----LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 700 RgngyKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKA 779
Cdd:COG4717 198 A----EELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 780 DTPGKTLIRQ---------LRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQI 850
Cdd:COG4717 274 TIAGVLFLVLgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 851 EENEEELGELMKKYSATVKQLNTEQINV-SEAEF-KLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSK-RLELR 927
Cdd:COG4717 354 REAEELEEELQLEELEQEIAALLAEAGVeDEEELrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEeELEEE 433
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 442619364 928 TKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQ 974
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEE 480
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
497-850 |
1.92e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 497 LEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEmndlrmlLEEQNARNNLLEKKQRKFDAECQSLQDAVRQ 576
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK-------IGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 577 ERQAKERYGREKDVLQAEkftleqtladtrldLEFKEEKLASLQRELEEMtfgggteeeFAQLRRSK-NETERRAKEQEE 655
Cdd:TIGR02169 749 LEQEIENVKSELKELEAR--------------IEELEEDLHKLEEALNDL---------EARLSHSRiPEIQAELSKLEE 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 656 ELDEMAGQIQLLEQAKLRLEMTLETMRKEaRRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRL 735
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKE-IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 736 SSME-DRDRVDRDAEEALN--QKLRRDLRKYKALLKDAQTQLERLKADTpgKTLIRQLRNQLEDAESARSLAmKARQTAE 812
Cdd:TIGR02169 885 GDLKkERDELEAQLRELERkiEELEAQIEKKRKRLSELKAKLEALEEEL--SEIEDPKGEDEEIPEEELSLE-DVQAELQ 961
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 442619364 813 AELTEVQAM----------FDESHRARNDAEERANAAHRDRAELQAQI 850
Cdd:TIGR02169 962 RVEEEIRALepvnmlaiqeYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
381-848 |
2.09e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 2.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 381 IREEDDELSELTVDLAEERSTAHIATERLEaETAERL--------KLEKELGDQTNKVKNLQETTEKLEMELICAKSDLN 452
Cdd:PRK03918 205 VLREINEISSELPELREELEKLEKEVKELE-ELKEEIeelekeleSLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 453 GISEDEDAENEDGVGGGVYKlKYERVARELEFTKRRLHTQH---EHDLEQLVALKKHLEmKLSDAYEEVVEQRQVVGQWK 529
Cdd:PRK03918 284 ELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEIngiEERIKELEEKEERLE-ELKKKLKELEKRLEELEERH 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 530 RKAQKMTNEMNDLRML--------LEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERygREKDVLQAEKFTLEQT 601
Cdd:PRK03918 362 ELYEEAKAKKEELERLkkrltgltPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKE--LKKAIEELKKAKGKCP 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 602 LADTRLDLEFKEEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKL--RLEMTLE 679
Cdd:PRK03918 440 VCGRELTEEHRKELLEEYTAELKRI------EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQlkELEEKLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 680 TMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHE---ERTLLLREKHELERRLSSMEDR-DRVDRDAEEALNQK 755
Cdd:PRK03918 514 KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKElEELGFESVEELEER 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 756 LRRDLRKYKAL--LKDAQTQLERLkadtpgKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDES--HRARND 831
Cdd:PRK03918 594 LKELEPFYNEYleLKDAEKELERE------EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEeyEELREE 667
|
490
....*....|....*..
gi 442619364 832 AEERANAAHRDRAELQA 848
Cdd:PRK03918 668 YLELSRELAGLRAELEE 684
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
414-1018 |
3.45e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 3.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 414 AERLKLEKELgDQTNKVKNLQETTEKlemELICAKSDLNGISEDEDAENEDGVGGGVYKLKYERVARELEFTKRRLHTQh 493
Cdd:PRK03918 176 RRIERLEKFI-KRTENIEELIKEKEK---ELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESL- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 494 EHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKrKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDA 573
Cdd:PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 574 VRQERQAKERygrekdvlqaekftleqtladtrldLEFKEEKLASLQRELEEMTfggGTEEEFAQLRRSKNETER-RAKE 652
Cdd:PRK03918 330 IKELEEKEER-------------------------LEELKKKLKELEKRLEELE---ERHELYEEAKAKKEELERlKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 653 QEEELDEMAGQIQLLEQAKLRLE---MTLETMRKEARRESQQRDEELEEVRGngyKKIKALECQLE-TEHEERTLLLREK 728
Cdd:PRK03918 382 TGLTPEKLEKELEELEKAKEEIEeeiSKITARIGELKKEIKELKKAIEELKK---AKGKCPVCGRElTEEHRKELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 729 HELERRLSSMEDRDRVDRDAEEALnQKLRRDLRKYKALLKDAQT--QLERLKADTpGKTLIRQLRNQLEDAESARSLAMK 806
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKEL-RELEKVLKKESELIKLKELaeQLKELEEKL-KKYNLEELEKKAEEYEKLKEKLIK 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 807 AR---QTAEAELTEVQAMFDES---HRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKY--------------SA 866
Cdd:PRK03918 537 LKgeiKSLKKELEKLEELKKKLaelEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFyneylelkdaekelER 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 867 TVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENlgdpsmammsKRLELRTKELESRLELEQATRARLE 946
Cdd:PRK03918 617 EEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY----------EELREEYLELSRELAGLRAELEELE 686
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442619364 947 VQVNRHKEALEKLQNEVTQSKMREMQAQDvIKKSQKSLRDMREEFhavssREQESLTRRKDLeKKVEQMESE 1018
Cdd:PRK03918 687 KRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKV-----KKYKALLKERAL-SKVGEIASE 751
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
600-822 |
4.76e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 4.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 600 QTLADTRLDLEFKEEKLASLQRELEemtfgggTEEEFAQLRRSKNETER-----RAKEQEEELDEMAGQIQLLEQAKLRL 674
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRE-------LAERYAAARERLAELEYlraalRLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 675 EMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQ 754
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442619364 755 KLRRDLRKYKALLKDAQTQLERLKAD-TPGKTLIRQLRNQLEDAESARS------LAMKARQTAEAELTEVQAMF 822
Cdd:COG4913 388 EAAALLEALEEELEALEEALAEAEAAlRDLRRELRELEAEIASLERRKSniparlLALRDALAEALGLDEAELPF 462
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
396-899 |
9.87e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 9.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 396 AEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEmELICAKSDLNGISEDEDAENEdgvgggVYKLKY 475
Cdd:PTZ00121 1280 ADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE-EAKKKADAAKKKAEEAKKAAE------AAKAEA 1352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 476 ERVARELEFTKRRlhtqhehdlEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNL 555
Cdd:PTZ00121 1353 EAAADEAEAAEEK---------AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA 1423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 556 LEKKQRKFDAEcqSLQDAVRQERQAKERYGREKDVLQAEKFtleqtladtrldlefkeEKLASLQRELEEMtfgggteEE 635
Cdd:PTZ00121 1424 KKKAEEKKKAD--EAKKKAEEAKKADEAKKKAEEAKKAEEA-----------------KKKAEEAKKADEA-------KK 1477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 636 FAQLRRSKNETERRAKEQEEELDEMAGQiqllEQAKLRLEmtlETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLE 715
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKA----AEAKKKAD---EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 716 TEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLE 795
Cdd:PTZ00121 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 796 DAESARSLAMKA----RQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQL 871
Cdd:PTZ00121 1631 EKKKVEQLKKKEaeekKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710
|
490 500
....*....|....*....|....*...
gi 442619364 872 NTEQINVSEaefKLNEMEAERNNLKEQV 899
Cdd:PTZ00121 1711 EAEEKKKAE---ELKKAEEENKIKAEEA 1735
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
455-1038 |
1.12e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 56.13 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 455 SEDEDAENEDGVGGGVYKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEM--------KLSDAYEEVVEQRQVVG 526
Cdd:pfam02463 151 KPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQakkaleyyQLKEKLELEEEYLLYLD 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 527 QWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYG---REKDVLQAEKFTLEQTLA 603
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKllaKEEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 604 DTRLDLEFKEEKLASLQRELEEMTFGGG---TEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLET 680
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEeleKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 681 MRKEARRESQQRDE-------ELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELER----RLSSMEDRDRVDRDAE 749
Cdd:pfam02463 391 KLKEEELELKSEEEkeaqlllELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKeeleKQELKLLKDELELKKS 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 750 EALNQKLR-RDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQ------AMF 822
Cdd:pfam02463 471 EDLLKETQlVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYkvaistAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 823 DESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVK----QLNTEQINVSEAEFKLNEMEAERNNLKEQ 898
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLeidpILNLAQLDKATLEADEDDKRAKVVEGILK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 899 VAELQHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIK 978
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 442619364 979 KSQKSLRDMREEFHAVSSREQE-SLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1038
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDkINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSL 771
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
497-1032 |
1.20e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 497 LEQLVALKKHLEmKLSDAYEEVVEQRQvvgqwkrkaQkmtnemndlRMLLEEQNARNNLLEKKQRKFDaECQSLQDAVR- 575
Cdd:COG4913 224 FEAADALVEHFD-DLERAHEALEDARE---------Q---------IELLEPIRELAERYAAARERLA-ELEYLRAALRl 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 576 -QERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtFGGGTEEefaQLRRSKNETERRAKEQE 654
Cdd:COG4913 284 wFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG--NGGDRLE---QLEREIERLERELEERE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 655 EELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALEcQLETEHEErtlLLREKHELERR 734
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALR-DLRRELRE---LEAEIASLERR 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 735 LSSMEDR-----------------------------------------------------DRVDRDAEEALNQ-KLRRDL 760
Cdd:COG4913 435 KSNIPARllalrdalaealgldeaelpfvgelievrpeeerwrgaiervlggfaltllvpPEHYAAALRWVNRlHLRGRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 761 RKYKALLKDAQTQLERLKADT-PGKTLIRQ------LRNQLED------AESARSLAMKARQ-TAEAELTEVQAMF---D 823
Cdd:COG4913 515 VYERVRTGLPDPERPRLDPDSlAGKLDFKPhpfrawLEAELGRrfdyvcVDSPEELRRHPRAiTRAGQVKGNGTRHekdD 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 824 ESHRARN-----DAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQiNVSEAEFKLNEMEAernnLKEQ 898
Cdd:COG4913 595 RRRIRSRyvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-RLAEYSWDEIDVAS----AERE 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 899 VAELQHRLDNVENlGDPSMAMMSKRLElrtkELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIK 978
Cdd:COG4913 670 IAELEAELERLDA-SSDDLAALEEQLE----ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 442619364 979 KSQKSLRDmrEEFHAVSSREQESLTRRkDLEKKVEQMESEGAALKNDLRLALQR 1032
Cdd:COG4913 745 LELRALLE--ERFAAALGDAVERELRE-NLEERIDALRARLNRAEEELERAMRA 795
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
547-1026 |
1.21e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 56.34 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 547 EEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKErygrEKDVLQaekftlEQTLADTRLDLEFKE--EKLASLQRELE 624
Cdd:pfam01576 5 EEMQAKEEELQKVKERQQKAESELKELEKKHQQLCE----EKNALQ------EQLQAETELCAEAEEmrARLAARKQELE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 625 EMTFG-----GGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEv 699
Cdd:pfam01576 75 EILHElesrlEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKE- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 700 RGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVD---RDAEEALNQKLRRDLRKYKALLKDAQTQLER 776
Cdd:pfam01576 154 RKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEekgRQELEKAKRKLEGESTDLQEQIAELQAQIAE 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 777 LKADTPGK-TLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEER-------------------- 835
Cdd:pfam01576 234 LRAQLAKKeEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQrrdlgeelealkteledtld 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 836 -ANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLN----------TEQINVSEaEFKLN------EMEAERNNLKEQ 898
Cdd:pfam01576 314 tTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRqkhtqaleelTEQLEQAK-RNKANlekakqALESENAELQAE 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 899 VAELQHRLDNVENlgdpsmamMSKRLELRTKELESRleLEQATRARLEVQvnrhkEALEKLQNEVTQSKMREMQAQDVIK 978
Cdd:pfam01576 393 LRTLQQAKQDSEH--------KRKKLEGQLQELQAR--LSESERQRAELA-----EKLSKLQSELESVSSLLNEAEGKNI 457
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 442619364 979 KSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDL 1026
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQL 505
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
381-991 |
1.43e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 55.68 E-value: 1.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 381 IREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKE---LGDQTNKVKNLQETTEKLEMELICAKSDLNGISED 457
Cdd:PRK01156 192 LKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDynnLKSALNELSSLEDMKNRYESEIKTAESDLSMELEK 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 458 EDAENEdgvgggvYKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSD--AYEEVVEQRQVVGQWKRKAQKM 535
Cdd:PRK01156 272 NNYYKE-------LEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEinKYHAIIKKLSVLQKDYNDYIKK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 536 TNEMNDLRMLLEEQnarnnllekkqRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEkftLEQTLADTRLDLEFKEEK 615
Cdd:PRK01156 345 KSRYDDLNNQILEL-----------EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAF---ISEILKIQEIDPDAIKKE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 616 LASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEE 695
Cdd:PRK01156 411 LNEINVKLQDI------SSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEK 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 696 LEEVRgngyKKIKALEcqleteheertlllREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYK---ALLKDAQT 772
Cdd:PRK01156 485 IREIE----IEVKDID--------------EKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKikiNELKDKHD 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 773 QLERLKADtpgktlIRQLRnqLEDAESARSLAMKA-RQTAEAELTEVQAMFDESHRARNDAEERANaahrdraELQAQIE 851
Cdd:PRK01156 547 KYEEIKNR------YKSLK--LEDLDSKRTSWLNAlAVISLIDIETNRSRSNEIKKQLNDLESRLQ-------EIEIGFP 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 852 ENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdpsmAMMSKRLELRTKEL 931
Cdd:PRK01156 612 DDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEI-----TSRINDIEDNLKKS 686
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 932 ESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKmREMQAQDVIKKSQKSLRDMREEF 991
Cdd:PRK01156 687 RKALDDAKANRARLESTIEILRTRINELSDRINDIN-ETLESMKKIKKAIGDLKRLREAF 745
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
584-910 |
1.92e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 1.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 584 YGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMtfgggteEEFAQLRRSKNETE-----RRAKEQEEELD 658
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA-------ERYQALLKEKREYEgyellKEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 659 EMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSM 738
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 739 EDRDR---VDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAEL 815
Cdd:TIGR02169 321 EERLAkleAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE------LEDLRAELEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 816 TEVQAMFDESHRARNDAEERANAAHRDRAELQAQIeeneEELGELMKKYSATVKQLNTEqinVSEAEFKLNEMEAERNNL 895
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAI----AGIEAKINELEEEKEDKALE---IKKQEWKLEQLAADLSKY 467
|
330
....*....|....*
gi 442619364 896 KEQVAELQHRLDNVE 910
Cdd:TIGR02169 468 EQELYDLKEEYDRVE 482
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
379-686 |
2.42e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 379 RTIREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELicakSDLNgiseDE 458
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL----TLLN----EE 818
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 459 DAENEDGVGGgvyklkYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEmKLSDAYEEVVEQRQVVGQWKRKAQKmtnE 538
Cdd:TIGR02168 819 AANLRERLES------LERRIAATERRLEDLEEQIEELSEDIESLAAEIE-ELEELIEELESELEALLNERASLEE---A 888
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 539 MNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERygrekdvLQAEKFTLEQTLA-DTRLDLEFKEEKLA 617
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG-------LEVRIDNLQERLSeEYSLTLEEAEALEN 961
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442619364 618 SLQRELEEmtfgggTEEEFAQLRRSKNE-------TERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEAR 686
Cdd:TIGR02168 962 KIEDDEEE------ARRRLKRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREAR 1031
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
614-1040 |
2.70e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 2.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 614 EKLASLQRELEEMTfggGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLEtmRKEARRESQQRD 693
Cdd:COG4717 71 KELKELEEELKEAE---EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE--LEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 694 EELEEVRgNGYKKIKALECQLETEHEERTLLlREKHELERRLSSMEDRDRVDRDAEEAlnQKLRRDLRKYKALLKDAQTQ 773
Cdd:COG4717 146 ERLEELE-ERLEELRELEEELEELEAELAEL-QEELEELLEQLSLATEEELQDLAEEL--EELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 774 LERLKADtpgktlIRQLRNQLEDAESARSLAmkaRQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEEN 853
Cdd:COG4717 222 LEELEEE------LEQLENELEAAALEERLK---EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 854 EEELGELMKKYSATVKQLnTEQINVSEAEFKlNEMEAERNNLKEQVAELQHRLDNVENLgdpsmammsKRLELRTKELES 933
Cdd:COG4717 293 LAREKASLGKEAEELQAL-PALEELEEEELE-ELLAALGLPPDLSPEELLELLDRIEEL---------QELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 934 RLELEQATRARLEVQVNRHKEALEKLQNEVTQSKmREMQAQDVIKKSQKSLRDMREEFHAVSSREQEsltrrKDLEKKVE 1013
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEELLEALDE-----EELEEELE 435
|
410 420
....*....|....*....|....*..
gi 442619364 1014 QMESEGAALKNDLRLALQRIADLQQAM 1040
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAEL 462
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
613-963 |
4.22e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 4.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 613 EEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMR---KEARRES 689
Cdd:TIGR02169 673 PAELQRLRERLEGL------KRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKerlEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 690 QQRDEELEEVRgngyKKIKALECQLETEHEErtlllreKHELERRLSSMEDRDRVDRDAE-EALNQKLRRDLRKYKALLK 768
Cdd:TIGR02169 747 SSLEQEIENVK----SELKELEARIEELEED-------LHKLEEALNDLEARLSHSRIPEiQAELSKLEEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 769 DAQTQLERLKADTP-GKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQ 847
Cdd:TIGR02169 816 EIEQKLNRLTLEKEyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 848 AQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAE------LQHRLDNVE----NLGDPSM 917
Cdd:TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAELQRVEeeirALEPVNM 975
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 442619364 918 AMMS--KRLELRTKELESRLELEQATRARLEVQVNRhkeaLEKLQNEV 963
Cdd:TIGR02169 976 LAIQeyEEVLKRLDELKEKRAKLEEERKAILERIEE----YEKKKREV 1019
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
612-866 |
8.44e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 8.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 612 KEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEarresqq 691
Cdd:COG4942 25 AEAELEQLQQEIAE------LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 692 rdeeleevrgngykkIKALECQLEteheertlllREKHELERRLSSMEDRDRVDRDAE----EALNQKLRRdLRKYKALL 767
Cdd:COG4942 92 ---------------IAELRAELE----------AQKEELAELLRALYRLGRQPPLALllspEDFLDAVRR-LQYLKYLA 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 768 KDAQTQLERLKADTPG-KTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAEL 846
Cdd:COG4942 146 PARREQAEELRADLAElAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
250 260
....*....|....*....|
gi 442619364 847 QAQIEENEEELGELMKKYSA 866
Cdd:COG4942 226 EALIARLEAEAAAAAERTPA 245
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
583-899 |
8.81e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 53.42 E-value: 8.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 583 RYGREK--DVLQAEKFTLEQTLADTRLDLEfkeeKLASLQRELEE-------MTFGGGTEEEFAQLRRSKNETER----- 648
Cdd:COG3096 780 RAAREKrlEELRAERDELAEQYAKASFDVQ----KLQRLHQAFSQfvgghlaVAFAPDPEAELAALRQRRSELERelaqh 855
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 649 RAKEQE--EELDEMAGQIQLLE----QAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGyKKIKALECQLETeheert 722
Cdd:COG3096 856 RAQEQQlrQQLDQLKEQLQLLNkllpQANLLADETLADRLEELREELDAAQEAQAFIQQHG-KALAQLEPLVAV------ 928
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 723 llLR---EKHE-LERRLSSMEDRDRVDRDAEEALNQKLRRdlRKYKALlKDAQTQLERlkadtpGKTLIRQLRNQLEDAE 798
Cdd:COG3096 929 --LQsdpEQFEqLQADYLQAKEQQRRLKQQIFALSEVVQR--RPHFSY-EDAVGLLGE------NSDLNEKLRARLEQAE 997
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 799 SARS---LAMKARQTAEAELTEVQAMFDESHRARND-------------------AEERanaAHRDRAELQAQIEENEEe 856
Cdd:COG3096 998 EARRearEQLRQAQAQYSQYNQVLASLKSSRDAKQQtlqeleqeleelgvqadaeAEER---ARIRRDELHEELSQNRS- 1073
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 442619364 857 lgelmkKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQV 899
Cdd:COG3096 1074 ------RRSQLEKQLTRCEAEMDSLQKRLRKAERDYKQEREQV 1110
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
767-997 |
9.38e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.46 E-value: 9.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 767 LKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAEL 846
Cdd:COG4942 22 AAEAEAELEQLQQE------IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 847 QAQIEENEEELGELMKKYSATVKQLNTEQI----NVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdpsmammSK 922
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLlspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL--------RA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442619364 923 RLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSR 997
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
612-990 |
9.99e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.42 E-value: 9.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 612 KEEKLASLQRELEEMtfgggtEEEFAQLRRSKNETErRAKEQEEELdeMAGQIQLLEQAKLRLEMtletmrKEARRESQQ 691
Cdd:PRK04863 784 REKRIEQLRAEREEL------AERYATLSFDVQKLQ-RLHQAFSRF--IGSHLAVAFEADPEAEL------RQLNRRRVE 848
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 692 RDEELEEVRGN------GYKKIKALeCQLETEHEERTLLLREKHELERrlsSMEDRDRVDRdAEEAlnqklRRDLRKYKA 765
Cdd:PRK04863 849 LERALADHESQeqqqrsQLEQAKEG-LSALNRLLPRLNLLADETLADR---VEEIREQLDE-AEEA-----KRFVQQHGN 918
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 766 LLKDAQTQLERLKADtPGKtlIRQLRNQLEDAESARSLAmKARQTAEAELTEVQAmfdesHRARNDAEERANAAhrdrAE 845
Cdd:PRK04863 919 ALAQLEPIVSVLQSD-PEQ--FEQLKQDYQQAQQTQRDA-KQQAFALTEVVQRRA-----HFSYEDAAEMLAKN----SD 985
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 846 LQAQIEENEEELGELMKKYSatvKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDnveNLGDPSMAMMSKRLE 925
Cdd:PRK04863 986 LNEKLRQRLEQAEQERTRAR---EQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQ---DLGVPADSGAEERAR 1059
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 442619364 926 LRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEvtqskmremqaqdvIKKSQKSLRDMREE 990
Cdd:PRK04863 1060 ARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKK--------------LRKLERDYHEMREQ 1110
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
647-1082 |
1.73e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 647 ERRAKEQEEELDEMAGQIQLLEQAKLRLEM-TLETMRKEARRESqqrdEELEEVRGNGYKKIKALECQLEtEHEERtllL 725
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKDLHERLnGLESELAELDEEI----ERYEEQREQARETRDEADEVLE-EHEER---R 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 726 REKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESArslam 805
Cdd:PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEE----- 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 806 kARQTAEAELTEVQAMFDESHRARNDA---EERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQ------- 875
Cdd:PRK02224 326 -LRDRLEECRVAAQAHNEEAESLREDAddlEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRerfgdap 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 876 INVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVEN--------------------LGDPSMAMMSKRLELRTKELESRL 935
Cdd:PRK02224 405 VDLGNAEDFLEELREERDELREREAELEATLRTARErveeaealleagkcpecgqpVEGSPHVETIEEDRERVEELEAEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 936 ELEQATRARLEVQVNRhKEALEKLQNEVTQSKMREmqaqdviKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQM 1015
Cdd:PRK02224 485 EDLEEEVEEVEERLER-AEDLVEAEDRIERLEERR-------EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEK 556
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442619364 1016 ESEGAALKNDLRLALQRIADLQQAMeEEGEEELSESDESLSSVGSISDLEDRLRPVHVKRSSQQSLN 1082
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSKL-AELKERIESLERIRTLLAAIADAEDEIERLREKREALAELN 622
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
558-800 |
1.90e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 558 KKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELeemtfgggteeefA 637
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL-------------A 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 638 QLRRSKNETERRAKEQEEELDEMAGQIQLL-EQAKLRLEMTLETMRKEARRE------SQQRDEELEEVRGNgYKKIKAL 710
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLqylkylAPARREQAEELRAD-LAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 711 ECQLETEHEERTLLLREKHELERRLSSmedrdrvDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKAdtpgktLIRQL 790
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEA-------LKAERQKLLARLEKELAELAAELAELQQEAEELEA------LIARL 232
|
250
....*....|
gi 442619364 791 RNQLEDAESA 800
Cdd:COG4942 233 EAEAAAAAER 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
358-849 |
3.22e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 3.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 358 DRESSVATISLTTGDNDDDDDRtIREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETT 437
Cdd:PRK02224 294 ERDDLLAEAGLDDADAEAVEAR-REELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESEL 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 438 EKLEMELICAKSDLNGIsEDEDAENEDGVGGGVYKLkyERVARELEftkrrlhtQHEHDLEQLVALKKHLEMKLSDAYEE 517
Cdd:PRK02224 373 EEAREAVEDRREEIEEL-EEEIEELRERFGDAPVDL--GNAEDFLE--------ELREERDELREREAELEATLRTARER 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 518 VVEQRQVVGQWK-------RKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDV 590
Cdd:PRK02224 442 VEEAEALLEAGKcpecgqpVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDL 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 591 lqaekftlEQTLADTRLDLEFKEEKLASLQRELEEmtfgggteeefaqLRRSKNETERRAKEQEEELDEMAGQIQLLEQA 670
Cdd:PRK02224 522 --------EELIAERRETIEEKRERAEELRERAAE-------------LEAEAEEKREAAAEAEEEAEEAREEVAELNSK 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 671 KLRLEMTLETMRKeaRRESQQRDEELEEVRGNGYKKIKALEcQLETEHEERtllLREKHELERRLSSMEDRDRVdrdaEE 750
Cdd:PRK02224 581 LAELKERIESLER--IRTLLAAIADAEDEIERLREKREALA-ELNDERRER---LAEKRERKRELEAEFDEARI----EE 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 751 ALNQKLRRDlrKYKALLKDAQTQLERLKADTPGKtlIRQLRNQLEDAESARslamKARQTAEAELTEVQAMFDEshrarn 830
Cdd:PRK02224 651 AREDKERAE--EYLEQVEEKLDELREERDDLQAE--IGAVENELEELEELR----ERREALENRVEALEALYDE------ 716
|
490
....*....|....*....
gi 442619364 831 dAEERANAAHRDRAELQAQ 849
Cdd:PRK02224 717 -AEELESMYGDLRAELRQR 734
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
832-1078 |
3.33e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 832 AEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVEn 911
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 912 lgdpsmammsKRLELRTKELESRLeleqatrARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEF 991
Cdd:COG4942 97 ----------AELEAQKEELAELL-------RALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 992 HAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRLALQRIADLQQAMEEEGEEELSESDESLSSVGSISDLEDRLRPV 1071
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
....*..
gi 442619364 1072 HVKRSSQ 1078
Cdd:COG4942 240 AERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
803-1024 |
3.36e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 803 LAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAE 882
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 883 FKLNEMEAERNNLKEQVAEL------QHRLDNVENLGDPS----MAMMSKRLELRTKELESRLELEQATRARLEVQVNRH 952
Cdd:COG4942 90 KEIAELRAELEAQKEELAELlralyrLGRQPPLALLLSPEdfldAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442619364 953 KEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKN 1024
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
472-1027 |
3.56e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 3.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 472 KLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLE-----MKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLL 546
Cdd:TIGR00618 244 YLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEetqerINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSR 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 547 EEQNARNNLLEKKQRKFDAECQSLQDAVRQE---RQAKERYGREKDVLQAEKfTLEQTLADTRLDLEFKEEKLASLQREL 623
Cdd:TIGR00618 324 AKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEihiRDAHEVATSIREISCQQH-TLTQHIHTLQQQKTTLTQKLQSLCKEL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 624 EEMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAklrlEMTLETMRKEARRESQQRDEELEEVRGNg 703
Cdd:TIGR00618 403 DILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITC----TAQCEKLEKIHLQESAQSLKEREQQLQT- 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 704 YKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLK-------DAQTQLER 776
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETseedvyhQLTSERKQ 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 777 LKADTPGKTLIRQ-------LRNQL-EDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERAN-----AAHRDR 843
Cdd:TIGR00618 558 RASLKEQMQEIQQsfsiltqCDNRSkEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDlqdvrLHLQQC 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 844 AELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLK---------EQVAELQHRLDNVENLGD 914
Cdd:TIGR00618 638 SQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEqltywkemlAQCQTLLRELETHIEEYD 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 915 PSMAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQN----EVTQSKMREMQAQDVIKKSQKSLRDMREE 990
Cdd:TIGR00618 718 REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFnnneEVTAALQTGAELSHLAAEIQFFNRLREED 797
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 442619364 991 FHAVSSREQESLTRRKD----LEKKVEQMESEGAALKNDLR 1027
Cdd:TIGR00618 798 THLLKTLEAEIGQEIPSdediLNLQCETLVQEEEQFLSRLE 838
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
539-700 |
4.27e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 4.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 539 MNDLRMLLEEQN--ARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKL 616
Cdd:COG1579 3 PEDLRALLDLQEldSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 617 ASL--QRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDE 694
Cdd:COG1579 83 GNVrnNKEYEAL------QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
....*.
gi 442619364 695 ELEEVR 700
Cdd:COG1579 157 ELEELE 162
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
379-762 |
4.65e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 4.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 379 RTIREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDE 458
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 459 DAENEDGVGGGvyklkyervARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNE 538
Cdd:COG1196 501 ADYEGFLEGVK---------AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 539 MNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERygrekdvlQAEKFTLEQTLADTRLD--LEFKEEKL 616
Cdd:COG1196 572 GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY--------VLGDTLLGRTLVAARLEaaLRRAVTLA 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 617 ASLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKlrlemtletmrKEARRESQQRDEEL 696
Cdd:COG1196 644 GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA-----------LLAEEEEERELAEA 712
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442619364 697 EEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRK 762
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
749-1069 |
5.46e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 749 EEALNQ--KLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAEsARSLAMKARQtAEAELTEVQAMFDESH 826
Cdd:TIGR02168 175 KETERKleRTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELE-LALLVLRLEE-LREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 827 RARNDAEERANaahrdraELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRL 906
Cdd:TIGR02168 253 EELEELTAELQ-------ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 907 DNVEnlgdpsmammSKRLELRTKELESRLELEQatrarLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRD 986
Cdd:TIGR02168 326 EELE----------SKLDELAEELAELEEKLEE-----LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQ 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 987 MREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALknDLRLALQRIADLQQAMEEEGEEELSESDESLSSVGSISDLED 1066
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEEL--LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
...
gi 442619364 1067 RLR 1069
Cdd:TIGR02168 469 ELE 471
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
549-1035 |
6.27e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.72 E-value: 6.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 549 QNARNNLLEkkqRKFDAEcQSLQDAVRQ---ERQAKERYGREKDVLQAEKFTLEQTL--ADTRLDLEF----KEEKLASL 619
Cdd:COG3096 277 ANERRELSE---RALELR-RELFGARRQlaeEQYRLVEMARELEELSARESDLEQDYqaASDHLNLVQtalrQQEKIERY 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 620 QRELEEMTFGGGTEEE-FAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAklrLEMtLETmRKEARRESQQRDEELEE 698
Cdd:COG3096 353 QEDLEELTERLEEQEEvVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA---LDV-QQT-RAIQYQQAVQALEKARA 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 699 VRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSsmedrdrvdrDAEEALNQklrrdLRKYKALLKDAQTQLERLK 778
Cdd:COG3096 428 LCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLS----------VADAARRQ-----FEKAYELVCKIAGEVERSQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 779 ADTPGKTLIRQLRNQledaesaRSLAMKArQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQaqieeneeelg 858
Cdd:COG3096 493 AWQTARELLRRYRSQ-------QALAQRL-QQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAE----------- 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 859 elmkkysatvkQLNTEQinvSEAEFKLNEMEAERNNLKEQVAELQHRLDNVEnlgdpsmammSKRLELRTKELesrlele 938
Cdd:COG3096 554 -----------ELEELL---AELEAQLEELEEQAAEAVEQRSELRQQLEQLR----------ARIKELAARAP------- 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 939 qatrARLEVQvnrhkEALEKLQNEVTQSKmreMQAQDVIKKSQKSLRDMREefhaVSSREQESLTRRKDLEKKVEQMESE 1018
Cdd:COG3096 603 ----AWLAAQ-----DALERLREQSGEAL---ADSQEVTAAMQQLLERERE----ATVERDELAARKQALESQIERLSQP 666
|
490
....*....|....*..
gi 442619364 1019 GAAlkNDLRlaLQRIAD 1035
Cdd:COG3096 667 GGA--EDPR--LLALAE 679
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
565-784 |
9.16e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 9.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 565 AECQSLQDAVRQERQAKERygrEKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKN 644
Cdd:COG4942 23 AEAEAELEQLQQEIAELEK---ELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA------LEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 645 ETERRAKEQEEELDEMAGQIQLLEQAK-----------LRLEMTLETM------RKEARRESQQRDEELEEVRGNGYKKI 707
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPplalllspedfLDAVRRLQYLkylapaRREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442619364 708 KALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGK 784
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
498-999 |
1.73e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 498 EQLVALKKHLEMKL-------SDAYEEVVEQRQV-VGQWKRKAQKMTNEMNDLRMLLE--EQNARN-NLLEKKQRkfdAE 566
Cdd:pfam15921 245 DQLEALKSESQNKIelllqqhQDRIEQLISEHEVeITGLTEKASSARSQANSIQSQLEiiQEQARNqNSMYMRQL---SD 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 567 CQSLQDAVRQE-RQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNE 645
Cdd:pfam15921 322 LESTVSQLRSElREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 646 T-ERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEvRGNGYKKIKALECQLETEHEertLL 724
Cdd:pfam15921 402 RlWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQG-KNESLEKVSSLTAQLESTKE---ML 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 725 LREKHELERRLSSMEDRDRVDRDAEEALNQKLR-----------------------RDLRKYKALLKDAQTQLERLKADT 781
Cdd:pfam15921 478 RKVVEELTAKKMTLESSERTVSDLTASLQEKERaieatnaeitklrsrvdlklqelQHLKNEGDHLRNVQTECEALKLQM 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 782 PGK-TLIRQLRNQLEDAESarsLAMKARQTAEAELTEvQAMFDESHRARndaeeranaahrdRAELQaQIEENEEELGEL 860
Cdd:pfam15921 558 AEKdKVIEILRQQIENMTQ---LVGQHGRTAGAMQVE-KAQLEKEINDR-------------RLELQ-EFKILKDKKDAK 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 861 MKKYSATVKQLNTEQINV----SEAEFKLNEMEAERNNLKEQVAELQHRLDNvenlgdpsmamMSKRLELRTKELESRLE 936
Cdd:pfam15921 620 IRELEARVSDLELEKVKLvnagSERLRAVKDIKQERDQLLNEVKTSRNELNS-----------LSEDYEVLKRNFRNKSE 688
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 442619364 937 LEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQ 999
Cdd:pfam15921 689 EMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQ 751
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
685-912 |
1.91e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 685 ARRESQQRDEELEEVRgngyKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRdrvDRDAEEALNQkLRRDLRKYK 764
Cdd:COG4942 18 QADAAAEAEAELEQLQ----QEIAELEKELAALKKEEKALLKQLAALERRIAALARR---IRALEQELAA-LEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 765 ALLKDAQTQLERLKADtpgktLIRQLRnQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARndaEERANAAHRDRA 844
Cdd:COG4942 90 KEIAELRAELEAQKEE-----LAELLR-ALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR---REQAEELRADLA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442619364 845 ELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENL 912
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
557-871 |
2.17e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 557 EKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLE--QTLADTRLDLEFKEEKLASLQRELEEMTFGGGtee 634
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLDASSD--- 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 635 EFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKE----ARRESQQRDEELEEVRGN--GYKKIK 708
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRleaaEDLARLELRALLEERFAAalGDAVER 765
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 709 ALECQLETEHE-ERTLLLREKHELERRLSS-----MEDRDRVDRDAEealnqklrrDLRKYKALLKDAQTQ-LERLKADt 781
Cdd:COG4913 766 ELRENLEERIDaLRARLNRAEEELERAMRAfnrewPAETADLDADLE---------SLPEYLALLDRLEEDgLPEYEER- 835
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 782 pgktlIRQLRNQLEDAESAR--SLAMKARQTAEAELTEVQAM-----FDESHRARNDAEERANAAHRD-RAELQAQIEEN 853
Cdd:COG4913 836 -----FKELLNENSIEFVADllSKLRRAIREIKERIDPLNDSlkripFGPGRYLRLEARPRPDPEVREfRQELRAVTSGA 910
|
330
....*....|....*...
gi 442619364 854 EEELGELMKKYSATVKQL 871
Cdd:COG4913 911 SLFDEELSEARFAALKRL 928
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
380-963 |
2.33e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 380 TIREEDDELSELTVDLAEerstahiaTERLEAETAERlklekelgdqtnkVKNLQETTEKLEmelicaksdlngiSEDED 459
Cdd:PRK02224 252 ELETLEAEIEDLRETIAE--------TEREREELAEE-------------VRDLRERLEELE-------------EERDD 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 460 AENEDGVGGGvyklkyervareleftkrrlhtqhehDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEM 539
Cdd:PRK02224 298 LLAEAGLDDA--------------------------DAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 540 NDlrmlLEEQNARnnlLEKKQRKFDAECQSLQDAVRQERQAKERygrekdvLQAEKFTLEQTLADTRLDLEFKEEKLASL 619
Cdd:PRK02224 352 DD----LEERAEE---LREEAAELESELEEAREAVEDRREEIEE-------LEEEIEELRERFGDAPVDLGNAEDFLEEL 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 620 QRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELD-----------EMAGQIQLLEQAKLRLEmTLETMRKEARRE 688
Cdd:PRK02224 418 REERDE------LREREAELEATLRTARERVEEAEALLEagkcpecgqpvEGSPHVETIEEDRERVE-ELEAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 689 SQQRDEELEEVrgngyKKIKALECQLETEHEERTLLlrEKHELERRLSSMEDRDRVD--RDAEEALNQKLRRDLRKYKAL 766
Cdd:PRK02224 491 VEEVEERLERA-----EDLVEAEDRIERLEERREDL--EELIAERRETIEEKRERAEelRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 767 LKDAQTQLERLKADTPGKTLIRQLRNQLEDAESARSLAMKARQTAEaELTEVQAMFDEshraRNDAEERANAAHRDR-AE 845
Cdd:PRK02224 564 EEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIE-RLREKREALAE----LNDERRERLAEKRERkRE 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 846 LQAQIEENEEELGELMKkysatvKQLNTEQINVSEaefKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLE 925
Cdd:PRK02224 639 LEAEFDEARIEEAREDK------ERAEEYLEQVEE---KLDELREERDDLQAEIGAVENELEELEELRERREALENRVEA 709
|
570 580 590
....*....|....*....|....*....|....*....
gi 442619364 926 LRTkeLESRLELEQATRARLEVQV-NRHKEALEKLQNEV 963
Cdd:PRK02224 710 LEA--LYDEAEELESMYGDLRAELrQRNVETLERMLNET 746
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
534-1024 |
4.04e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 4.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 534 KMTNEMNDLRMLLEEqnarnnlLEKKQRKFDAECQSLQ---DAVRQERQAKE-------RYGREKDVLQAEKFTLEQTLA 603
Cdd:TIGR04523 156 KLNNKYNDLKKQKEE-------LENELNLLEKEKLNIQkniDKIKNKLLKLElllsnlkKKIQKNKSLESQISELKKQNN 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 604 DTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRK 683
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISN------TQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 684 EArreSQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSME-DRDRVDRDAEEALNQ--KLRRDL 760
Cdd:TIGR04523 303 QK---EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSEsENSEKQRELEEKQNEieKLKKEN 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 761 RKYKALLKDAQTQLERLKADTPG-KTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAA 839
Cdd:TIGR04523 380 QSYKQEIKNLESQINDLESKIQNqEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 840 HRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdpsmam 919
Cdd:TIGR04523 460 DNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE------- 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 920 mSKRLELRTKELESRLEL--EQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFhAVSSR 997
Cdd:TIGR04523 533 -KKEKESKISDLEDELNKddFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI-EEKEK 610
|
490 500
....*....|....*....|....*...
gi 442619364 998 EQESLTRR-KDLEKKVEQMESEGAALKN 1024
Cdd:TIGR04523 611 KISSLEKElEKAKKENEKLSSIIKNIKS 638
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
386-817 |
4.70e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 386 DELSELTVDLAEERSTahiaTERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMelicAKSDLNGISEDEDAENEdg 465
Cdd:COG4717 71 KELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKLEK----LLQLLPLYQELEALEAE-- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 466 vgggvyklkYERVARELEFTKRRLHtQHEHDLEQLVALKKHLEMKlsdayeevveQRQVVGQWKRKAQKMTNEMNDLRML 545
Cdd:COG4717 141 ---------LAELPERLEELEERLE-ELRELEEELEELEAELAEL----------QEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 546 LEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLeqtLADTRLDLEFKEEKLASLQRELEE 625
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLL---IAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 626 MTFGGG------------TEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRD 693
Cdd:COG4717 278 VLFLVLgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 694 EELEEVRGNGY-KKIKAL--ECQLETEHE--ERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQK-----LRRDLRKY 763
Cdd:COG4717 358 ELEEELQLEELeQEIAALlaEAGVEDEEElrAALEQAEEYQELKEELEELEEQLEELLGELEELLEAldeeeLEEELEEL 437
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 442619364 764 KALLKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSL--AMKARQTAEAELTE 817
Cdd:COG4717 438 EEELEELEEELEELREE------LAELEAELEQLEEDGELaeLLQELEELKAELRE 487
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
475-962 |
5.27e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 475 YERVARELEFTKRRLHTqhehdLEQLVALKKHLEmKLSDAYEEVVEQRQVVGQWK--RKAQKMTNEMNDLRMLLEEQNAR 552
Cdd:COG4913 237 LERAHEALEDAREQIEL-----LEPIRELAERYA-AARERLAELEYLRAALRLWFaqRRLELLEAELEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 553 NNLLEKKQRKFDAECQSLQDAVRQ-ERQAKERYGREKDVLQAEKFT-------LEQTLADTRLDLEFKEEKLASLQRELE 624
Cdd:COG4913 311 LERLEARLDALREELDELEAQIRGnGGDRLEQLEREIERLERELEErerrrarLEALLAALGLPLPASAEEFAALRAEAA 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 625 EmtFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDE------ELEE 698
Cdd:COG4913 391 A--LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAelpfvgELIE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 699 VRG----------------------------------NGYK--------KIKALECQLETEHEERTLLLRE--------- 727
Cdd:COG4913 469 VRPeeerwrgaiervlggfaltllvppehyaaalrwvNRLHlrgrlvyeRVRTGLPDPERPRLDPDSLAGKldfkphpfr 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 728 ---KHELERRLS------------------------------SMEDRDRVDR------DAEEALN------QKLRRDLRK 762
Cdd:COG4913 549 awlEAELGRRFDyvcvdspeelrrhpraitragqvkgngtrhEKDDRRRIRSryvlgfDNRAKLAaleaelAELEEELAE 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 763 YKALLKDAQTQLERLKADtpgKTLIRQLRNQLEDAESARSLAMKARQTAE---------AELTEVQAMFDESHRARNDAE 833
Cdd:COG4913 629 AEERLEALEAELDALQER---REALQRLAEYSWDEIDVASAEREIAELEAelerldassDDLAALEEQLEELEAELEELE 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 834 ERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEA----ERNNLKEQVAELQHRLDNV 909
Cdd:COG4913 706 EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAvereLRENLEERIDALRARLNRA 785
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 442619364 910 ENLGDPSMAMMSKRLELRTKELESRLELEQATRARLEVQVN----RHKEALEKLQNE 962
Cdd:COG4913 786 EEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEdglpEYEERFKELLNE 842
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
350-907 |
5.33e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 5.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 350 SRGNSVARDRESSVATISLTTGDNDDDDDRTIREEDDELSELTVDLAEERSTAHIATERLEAE-----------TAERLK 418
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQlvlanselteaRTERDQ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 419 LEKELGDQTNKVKNLQETTEKLEMELICAKSDlNGISEDEDAENEdgvgggvykLKYERVARELEftkrrlhtQHEHDLE 498
Cdd:pfam15921 368 FSQESGNLDDQLQKLLADLHKREKELSLEKEQ-NKRLWDRDTGNS---------ITIDHLRRELD--------DRNMEVQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 499 QLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMND----LRMLLEEQNARNNLLEKKQRKFDAECQSLQDav 574
Cdd:pfam15921 430 RLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLEStkemLRKVVEELTAKKMTLESSERTVSDLTASLQE-- 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 575 rqerqaKERygrekdvlQAEKFTLEQTLADTRLDLEFKEekLASLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKEQE 654
Cdd:pfam15921 508 ------KER--------AIEATNAEITKLRSRVDLKLQE--LQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 655 EELDEMAGQ------IQLLEQAKLRLEMTLETM----------RKEAR-RESQQR--DEELEEVR--GNGYKKIKALEcq 713
Cdd:pfam15921 572 ENMTQLVGQhgrtagAMQVEKAQLEKEINDRRLelqefkilkdKKDAKiRELEARvsDLELEKVKlvNAGSERLRAVK-- 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 714 leTEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLErlkadtpgktlirQLRNQ 793
Cdd:pfam15921 650 --DIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELE-------------QTRNT 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 794 LEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQieeneeelgelMKKYSATVKQLNT 873
Cdd:pfam15921 715 LKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEE-----------KNKLSQELSTVAT 783
|
570 580 590
....*....|....*....|....*....|....
gi 442619364 874 EQinvSEAEFKLNEMEAERNNLKEQVAELQHRLD 907
Cdd:pfam15921 784 EK---NKMAGELEVLRSQERRLKEKVANMEVALD 814
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
545-818 |
5.73e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 47.20 E-value: 5.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 545 LLEEQNARNNLLekkqRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELE 624
Cdd:pfam07888 36 LEECLQERAELL----QAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 625 EMTfgggteEEFAQLRRSKNETERRAKEQEEEldemagqIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVrgngy 704
Cdd:pfam07888 112 ELS------EEKDALLAQRAAHEARIRELEED-------IKTLTQRVLERETELERMKERAKKAGAQRKEEEAER----- 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 705 kkiKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRK---YKALLKDAQTQLERLKADT 781
Cdd:pfam07888 174 ---KQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKeaeNEALLEELRSLQERLNASE 250
|
250 260 270
....*....|....*....|....*....|....*..
gi 442619364 782 PGKTLirqLRNQLEDAESARSLAMKARQTAEAELTEV 818
Cdd:pfam07888 251 RKVEG---LGEELSSMAAQRDRTQAELHQARLQAAQL 284
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
491-1028 |
5.76e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 491 TQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKK-QRKFDAECQS 569
Cdd:pfam05483 250 TEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDlQIATKTICQL 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 570 LQDA---VRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASL-------QRELEEMT-FGGGTEEEFAQ 638
Cdd:pfam05483 330 TEEKeaqMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIItmelqkkSSELEEMTkFKNNKEVELEE 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 639 LRRSKNETERRAKEQEEeLDEMAGQIQLLEQaklRLEMTLETMRKEARRESQQRdEELEEVRGNGYKKIKALECQLETEH 718
Cdd:pfam05483 410 LKKILAEDEKLLDEKKQ-FEKIAEELKGKEQ---ELIFLLQAREKEIHDLEIQL-TAIKTSEEHYLKEVEDLKTELEKEK 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 719 EERTLLLREKHELerrlsSMEDRDRVDRDAEEALnqklrrDLRKYKALLKDAQTQLER-LKADTPGKTLIRQLRNQLE-- 795
Cdd:pfam05483 485 LKNIELTAHCDKL-----LLENKELTQEASDMTL------ELKKHQEDIINCKKQEERmLKQIENLEEKEMNLRDELEsv 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 796 --DAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNT 873
Cdd:pfam05483 554 reEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNA 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 874 EQInvseaefKLNEMEAERNNLKEQVAELqhrLDNVENlgdpsmammskrlELRTKELESRLELEQATRARLEVQvnrhk 953
Cdd:pfam05483 634 YEI-------KVNKLELELASAKQKFEEI---IDNYQK-------------EIEDKKISEEKLLEEVEKAKAIAD----- 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 954 EALeKLQNEV---TQSKMREMQAQDVIKKSQ--KSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKNDLRL 1028
Cdd:pfam05483 686 EAV-KLQKEIdkrCQHKIAEMVALMEKHKHQydKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEI 764
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
587-829 |
6.50e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 6.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 587 EKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQL 666
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAA------LERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 667 LEQAKLRLEMTLETMRKEARRESQQRDEEL--------EEVRGNGYKK--IKALECQLETEHEERTLLLREKHELERRls 736
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALllspedflDAVRRLQYLKylAPARREQAEELRADLAELAALRAELEAE-- 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 737 smedrdrvdRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTpgKTLIRQLRNQLEDAESARSLAMKARQTAEAELT 816
Cdd:COG4942 173 ---------RAELEALLAELEEERAALEALKAERQKLLARLEKEL--AELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
250
....*....|...
gi 442619364 817 EVQAMFDESHRAR 829
Cdd:COG4942 242 RTPAAGFAALKGK 254
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
628-777 |
7.27e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 46.63 E-value: 7.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 628 FGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEE----LEEVRGNG 703
Cdd:PRK12705 17 LLGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEErlvqKEEQLDAR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 704 YKKIKALECQLETehEERTLLLREKhELERRLSSMEDR-DRVDRDAEEALNQKLRRDLRK---------YKALLKDAQTQ 773
Cdd:PRK12705 97 AEKLDNLENQLEE--REKALSAREL-ELEELEKQLDNElYRVAGLTPEQARKLLLKLLDAeleeekaqrVKKIEEEADLE 173
|
....
gi 442619364 774 LERL 777
Cdd:PRK12705 174 AERK 177
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
589-908 |
7.85e-05 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 46.61 E-value: 7.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 589 DVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMTfggGTEEEFAQLRRSKN---ETERRAKEQE----------E 655
Cdd:pfam05622 69 EQLQEENFRLETARDDYRIKCEELEKEVLELQHRNEELT---SLAEEAQALKDEMDilrESSDKVKKLEatvetykkklE 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 656 ELDEMAGQIQLLE-------QAKLRLE----------MTLETMRKEARRESQQRDEELeevrgngyKKIKALECQLETEH 718
Cdd:pfam05622 146 DLGDLRRQVKLLEernaeymQRTLQLEeelkkanalrGQLETYKRQVQELHGKLSEES--------KKADKLEFEYKKLE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 719 EERTLLLREKhelerrlssmeDRDRVDRDAEEALNQKLR------RDLRKYKALLKDAQTQLERLKADT-PGKTLIRQLR 791
Cdd:pfam05622 218 EKLEALQKEK-----------ERLIIERDTLRETNEELRcaqlqqAELSQADALLSPSSDPGDNLAAEImPAEIREKLIR 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 792 NQLEDaesaRSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKY--SATVK 869
Cdd:pfam05622 287 LQHEN----KMLRLGQEGSYRERLTELQQLLEDANRRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAedSSLLK 362
|
330 340 350
....*....|....*....|....*....|....*....
gi 442619364 870 QLNTEQINvseaefKLNEMEAERNNLKEQVAELQHRLDN 908
Cdd:pfam05622 363 QKLEEHLE------KLHEAQSELQKKKEQIEELEPKQDS 395
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
396-1020 |
1.39e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 396 AEERSTAHIATERleAETAERLKlEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDGVGGGVYKLKY 475
Cdd:PTZ00121 1111 AEEARKAEEAKKK--AEDARKAE-EARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEV 1187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 476 ERVA--RELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMndlrmLLEEQNARN 553
Cdd:PTZ00121 1188 RKAEelRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEE-----IRKFEEARM 1262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 554 NLLEKKQRKFDAECQSLQDAVR--QERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMTFGGG 631
Cdd:PTZ00121 1263 AHFARRQAAIKAEEARKADELKkaEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 632 TEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALE 711
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE 1422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 712 CQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEAlnQKLRRDLRKYKALLKDAQtqlERLKADTPGKTlirqlr 791
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEA--KKKAEEAKKADEAKKKAE---EAKKADEAKKK------ 1491
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 792 nqledAESARSLAMKARQTAEAELTEVQAMFDESHRarnDAEERANAAHRDRAElqaqieeneEELGELMKKYSATVKQl 871
Cdd:PTZ00121 1492 -----AEEAKKKADEAKKAAEAKKKADEAKKAEEAK---KADEAKKAEEAKKAD---------EAKKAEEKKKADELKK- 1553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 872 nTEQINVSEAEFKLNEM--EAERNNLKEQVAELQHRLDnvenlgdpsmammSKRLELRTK--ELESRLELEQATRA---- 943
Cdd:PTZ00121 1554 -AEELKKAEEKKKAEEAkkAEEDKNMALRKAEEAKKAE-------------EARIEEVMKlyEEEKKMKAEEAKKAeeak 1619
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 944 ------RLEVQVNRHKEALEKLQNEVTQ--SKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQM 1015
Cdd:PTZ00121 1620 ikaeelKKAEEEKKKVEQLKKKEAEEKKkaEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
|
....*
gi 442619364 1016 ESEGA 1020
Cdd:PTZ00121 1700 EAKKA 1704
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
595-814 |
1.42e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 595 KFTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggTEEEFAQLRRSKN--ETERRAKEQEEELDEMAGQIQLLEQAKL 672
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE------AEAALEEFRQKNGlvDLSEEAKLLLQQLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 673 RLEMTLETMRKEARRESQQRDEELEEVRGNGYK-KIKALECQLET-------EHEERTLLLREKHELERRLSSMEDRDRV 744
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLRaQLAELEAELAElsarytpNHPDVIALRAQIAALRAQLQQEAQRILA 316
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 745 DRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAE 814
Cdd:COG3206 317 SLEAELEALQAREASLQAQLAQLEARLAELPELEAE------LRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
383-837 |
1.60e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 383 EEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAEN 462
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 463 EDGVGggvyKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDL 542
Cdd:PTZ00121 1521 AKKAD----EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 543 RMLLEEQNARnnlLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTladtRLDLEFKEEKLASLQRE 622
Cdd:PTZ00121 1597 VMKLYEEEKK---MKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL----KKAEEENKIKAAEEAKK 1669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 623 LEEmtfgggtEEEFAQLRRSKNETERRakeQEEELDEMAGQIQLLEQAKLRLEmtlETMRK--EARRESQQRDEELEEVR 700
Cdd:PTZ00121 1670 AEE-------DKKKAEEAKKAEEDEKK---AAEALKKEAEEAKKAEELKKKEA---EEKKKaeELKKAEEENKIKAEEAK 1736
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 701 GNGYKKIKALEcQLETEHEERTLLLREKHELERRlsSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKAD 780
Cdd:PTZ00121 1737 KEAEEDKKKAE-EAKKDEEEKKKIAHLKKEEEKK--AEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEG 1813
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 442619364 781 TPGKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEvQAMFDESHRARNDAEERAN 837
Cdd:PTZ00121 1814 GKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE-KHKFNKNNENGEDGNKEAD 1869
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
613-1069 |
1.93e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 613 EEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEmagqIQLLEQAKLRLEMTL---ETMRKEARRES 689
Cdd:PRK02224 212 ESELAELDEEIERY------EEQREQARETRDEADEVLEEHEERREE----LETLEAEIEDLRETIaetEREREELAEEV 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 690 QQRDEELEEVRgngyKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDR-DAEEALNQ--KLRRDLRKYKAL 766
Cdd:PRK02224 282 RDLRERLEELE----EERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvAAQAHNEEaeSLREDADDLEER 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 767 LKDAQTQLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAEL 846
Cdd:PRK02224 358 AEELREEAAELESE------LEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 847 QAQIEENEEELGELMKKYSA----TVKQLNTEQINV---SEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLgdPSMAM 919
Cdd:PRK02224 432 EATLRTARERVEEAEALLEAgkcpECGQPVEGSPHVetiEEDRERVEELEAELEDLEEEVEEVEERLERAEDL--VEAED 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 920 MSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKL------QNEVTQSKMREMQA-----------QDVIKKSQK 982
Cdd:PRK02224 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELeaeaeeKREAAAEAEEEAEEareevaelnskLAELKERIE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 983 SLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAALKN------------------DLRLALQRIADLQQAMEEEG 1044
Cdd:PRK02224 590 SLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEkrerkreleaefdearieEAREDKERAEEYLEQVEEKL 669
|
490 500
....*....|....*....|....*
gi 442619364 1045 EEELSESDESLSSVGSISDLEDRLR 1069
Cdd:PRK02224 670 DELREERDDLQAEIGAVENELEELE 694
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
415-967 |
3.28e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 415 ERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDaenedgvgggvyKLKYERVARELEFTkrrlhtqhe 494
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID------------KIKNKLLKLELLLS--------- 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 495 hDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMND----LRMLLEEQNARNNLLEKKQRKFDAECQSL 570
Cdd:TIGR04523 205 -NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNtqtqLNQLKDEQNKIKKQLSEKQKELEQNNKKI 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 571 QDAVRQERQAKErygrEKDVLQAEKftLEQTLADTRLDLEFKEEKLASLQRELEEMTFG-GGTEEEFAQLRRSKNETERR 649
Cdd:TIGR04523 284 KELEKQLNQLKS----EISDLNNQK--EQDWNKELKSELKNQEKKLEEIQNQISQNNKIiSQLNEQISQLKKELTNSESE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 650 AKEQEEELDEMAGQIQLLE---QAKLRLEMTLETMRKEARRESQQRDEELEEVRgngyKKIKALECQLETEHEERTLLLR 726
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKkenQSYKQEIKNLESQINDLESKIQNQEKLNQQKD----EQIKKLQQEKELLEKEIERLKE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 727 EKHELERRLSSMEDRDRVDRDAEEALNQK---LRRDLRKYKALLKDAQTQLERLKADTPGKT--------LIRQLRNQLE 795
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKNLDNTresLETQLKVLSRSINKIKQNLEQKQKELKSKEkelkklneEKKELEEKVK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 796 DAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANaahrdRAELQAQIeeneEELGELMKKYSATVKQLNTEQ 875
Cdd:TIGR04523 514 DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK-----KENLEKEI----DEKNKEIEELKQTQKSLKKKQ 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 876 invSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENlgdpsmammskrlELRTKELESRleleqatraRLEVQVNRHKEA 955
Cdd:TIGR04523 585 ---EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEK-------------ELEKAKKENE---------KLSSIIKNIKSK 639
|
570
....*....|..
gi 442619364 956 LEKLQNEVTQSK 967
Cdd:TIGR04523 640 KNKLKQEVKQIK 651
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
468-675 |
3.80e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 468 GGVYKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRmLLE 547
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ-LEE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 548 EQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERY-------------------GREKDVLQAEKFTLEQTLADTRLD 608
Cdd:COG4717 368 LEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELeeleeqleellgeleelleALDEEELEEELEELEEELEELEEE 447
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 442619364 609 LEFKEEKLASLQRELEEMtfggGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLE 675
Cdd:COG4717 448 LEELREELAELEAELEQL----EEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYR 510
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
647-837 |
3.94e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 3.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 647 ERRAKEQEEELDEMAGQIqlLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLEtEHEERtlllr 726
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRI--LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLL-QKEEN----- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 727 ekheLERRLSSMEDRDRVDRDAEEALNQKLrRDLRK----YKALLKDAQTQLERLKADTpgktlirqlrnqledAESARS 802
Cdd:PRK12704 98 ----LDRKLELLEKREEELEKKEKELEQKQ-QELEKkeeeLEELIEEQLQELERISGLT---------------AEEAKE 157
|
170 180 190
....*....|....*....|....*....|....*..
gi 442619364 803 LAMKarqTAEAEL-TEVQAMFDESH-RARNDAEERAN 837
Cdd:PRK12704 158 ILLE---KVEEEArHEAAVLIKEIEeEAKEEADKKAK 191
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
495-1013 |
5.00e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.43 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 495 HDLEQLVALKKHLEMKLSDAYEEVVEQRQV-----------VGQWKRKAQKMTNEMNDLRMLLEEQNARNN--------- 554
Cdd:pfam10174 250 RDLEDEVQMLKTNGLLHTEDREEEIKQMEVykshskfmknkIDQLKQELSKKESELLALQTKLETLTNQNSdckqhievl 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 555 ---LLEKKQRKfdAECQSLQDAVRQERQAKERYGREKDV----LQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMt 627
Cdd:pfam10174 330 kesLTAKEQRA--AILQTEVDALRLRLEEKESFLNKKTKqlqdLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENL- 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 628 fgggtEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRgngyKKI 707
Cdd:pfam10174 407 -----QEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLK----KEN 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 708 KALECQLETEH----EERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKlRRDLRKYKALLKDAQTQLERLKADTPG 783
Cdd:pfam10174 478 KDLKEKVSALQpeltEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQK-KEECSKLENQLKKAHNAEEAVRTNPEI 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 784 KTLIRQLRNqledaesarslamkarqtaeaeltEVQAMFDESHRARNDAEERANAahrdraelqaqieeneeelgelmkk 863
Cdd:pfam10174 557 NDRIRLLEQ------------------------EVARYKEESGKAQAEVERLLGI------------------------- 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 864 ysatvkqlnteqinvseaefkLNEMEAERNNLKEQVAELQHRLD--------NVENLGDPSMAMMSKRLELRTkelESRL 935
Cdd:pfam10174 588 ---------------------LREVENEKNDKDKKIAELESLTLrqmkeqnkKVANIKHGQQEMKKKGAQLLE---EARR 643
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442619364 936 ELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEfhavssreqesltRRKDLEKKVE 1013
Cdd:pfam10174 644 REDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAE-------------RRKQLEEILE 708
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
530-903 |
5.78e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 5.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 530 RKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDL 609
Cdd:pfam10174 338 QRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQL 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 610 EFKEEKLASLQRELEEMTFGGGTEEEFAQ-----LRRSKNETERRAKEQEEELDEMAGQIQLLEQaKLRLEMTLETMRKE 684
Cdd:pfam10174 418 AGLKERVKSLQTDSSNTDTALTTLEEALSekeriIERLKEQREREDRERLEELESLKKENKDLKE-KVSALQPELTEKES 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 685 ARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREkhelERRLSSMEDRDRVDRDAEEALnQKLRRDLRKYK 764
Cdd:pfam10174 497 SLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQ----LKKAHNAEEAVRTNPEINDRI-RLLEQEVARYK 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 765 ALLKDAQTQLERLKAdtpgktLIRQLRNQ-------LEDAESARSLAMKARQTAEAELTEVQAmFDESHRARNDAEERAN 837
Cdd:pfam10174 572 EESGKAQAEVERLLG------ILREVENEkndkdkkIAELESLTLRQMKEQNKKVANIKHGQQ-EMKKKGAQLLEEARRR 644
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442619364 838 AAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQ 903
Cdd:pfam10174 645 EDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMK 710
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
577-850 |
5.85e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 577 ERQAKERYGR-EKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQR------ELEEMTFGGGTEEEFAQLRRSKNETERR 649
Cdd:pfam17380 286 ERQQQEKFEKmEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRqaaiyaEQERMAMERERELERIRQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 650 akeQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKH 729
Cdd:pfam17380 366 ---RQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 730 ELERRLSSMEDRDRVDRDAEEALNQKlrRDLRKYKALLKDAQtQLERLKADTPGKTLIRQlrnQLEDAESARSLAMKARQ 809
Cdd:pfam17380 443 ERAREMERVRLEEQERQQQVERLRQQ--EEERKRKKLELEKE-KRDRKRAEEQRRKILEK---ELEERKQAMIEEERKRK 516
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 442619364 810 TAEAELTEVQ-AMFDESHRARNDAEERANAAHRDRAELQAQI 850
Cdd:pfam17380 517 LLEKEMEERQkAIYEEERRREAEEERRKQQEMEERRRIQEQM 558
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
577-740 |
6.03e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 577 ERQAKERYGREK---DVLQAEkfTLEQTLADTRLDLEFKEEKLASLQRELEEmtfgggteEEFAQLRRSKNETERRAKEQ 653
Cdd:COG2433 356 EKKVPPDVDRDEvkaRVIRGL--SIEEALEELIEKELPEEEPEAEREKEHEE--------RELTEEEEEIRRLEEQVERL 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 654 EEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESqQRDEELEEVRgngyKKIKALECQLETEHEERtlllrekHELER 733
Cdd:COG2433 426 EAEVEELEAELEEKDERIERLERELSEARSEERREI-RKDREISRLD----REIERLERELEEERERI-------EELKR 493
|
....*..
gi 442619364 734 RLSSMED 740
Cdd:COG2433 494 KLERLKE 500
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
534-838 |
7.14e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 43.52 E-value: 7.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 534 KMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKE 613
Cdd:pfam19220 38 AILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKT 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 614 EKLASLQRELE-EMTFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQqR 692
Cdd:pfam19220 118 AQAEALERQLAaETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTR-R 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 693 DEELEEVRGNGYKKIKALECQLETEHEERTlllREKHELERRLSSMEDRDRVDRDAEEALNQKLRrdlrKYKALLKDAQT 772
Cdd:pfam19220 197 LAELETQLDATRARLRALEGQLAAEQAERE---RAEAQLEEAVEAHRAERASLRMKLEALTARAA----ATEQLLAEARN 269
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442619364 773 QLERLKADtpgktlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANA 838
Cdd:pfam19220 270 QLRDRDEA------IRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEERAEM 329
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
379-1020 |
7.94e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 379 RTIREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKN-LQETTEKLEMELICAKSDLNGISED 457
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNsLTETLKKEVKSLQNEKADLDRKLRK 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 458 EDAENEDGVGGGVYKLKYERVARELEFTKRRLHTQHEHDLEQLVAL------KKHLEMKLSDAYEEVVEQRQVVGQWKRK 531
Cdd:TIGR00606 520 LDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKE 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 532 AQKMTNEMNDLRMLLEEQNARNNLLEKKQrkFDA-ECQSLQDAVRQERQAKERYGREKDVLQA---------EKFTLEQT 601
Cdd:TIGR00606 600 LASLEQNKNHINNELESKEEQLSSYEDKL--FDVcGSQDEESDLERLKEEIEKSSKQRAMLAGatavysqfiTQLTDENQ 677
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 602 LADTRLDLEFKEEK-LASLQRELEEMTFGGGTEEEfaqlrrsknETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLet 680
Cdd:TIGR00606 678 SCCPVCQRVFQTEAeLQEFISDLQSKLRLAPDKLK---------STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEI-- 746
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 681 mrKEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLL---------REKHELERR---LSSMEDRDRVDRDA 748
Cdd:TIGR00606 747 --PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimerfqMELKDVERKiaqQAAKLQGSDLDRTV 824
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 749 EEaLNQKLRRDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESARSLAMKARQTAEAEL----TEVQAMFDE 824
Cdd:TIGR00606 825 QQ-VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLvelsTEVQSLIRE 903
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 825 SHRARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNE--------MEAERNNLK 896
Cdd:TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgkddylkqKETELNTVN 983
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 897 EQVAELQHRLDNVENlgdpsmAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQskMREMQAQDV 976
Cdd:TIGR00606 984 AQLEECEKHQEKINE------DMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQ--MQVLQMKQE 1055
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 442619364 977 IKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGA 1020
Cdd:TIGR00606 1056 HQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDA 1099
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
706-943 |
9.14e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 9.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 706 KIKALECQLETEHEERTLllreKHELERRLSSMEDRDRVDRDAEEalnqkLRRDLRKYKALLKDAQTQLERLKADTP--- 782
Cdd:PRK11281 44 QLDALNKQKLLEAEDKLV----QQDLEQTLALLDKIDRQKEETEQ-----LKQQLAQAPAKLRQAQAELEALKDDNDeet 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 783 ----GKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAmfdeshrarndAEERANAAHRDRAELQAQIEENEEELG 858
Cdd:PRK11281 115 retlSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQT-----------QPERAQAALYANSQRLQQIRNLLKGGK 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 859 ELMKKYSATVK-QLNTEQINVsEAEFKLNEMEAERNN------------LKEQVAELQHRLDNVENLGDpsmammSKRLE 925
Cdd:PRK11281 184 VGGKALRPSQRvLLQAEQALL-NAQNDLQRKSLEGNTqlqdllqkqrdyLTARIQRLEHQLQLLQEAIN------SKRLT 256
|
250
....*....|....*...
gi 442619364 926 LRTKELESRLELEQATRA 943
Cdd:PRK11281 257 LSEKTVQEAQSQDEAARI 274
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
599-896 |
1.37e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 599 EQTLADTRLDLEFKEEKLASLQRELEEM-----------------TFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMA 661
Cdd:PRK04863 785 EKRIEQLRAEREELAERYATLSFDVQKLqrlhqafsrfigshlavAFEADPEAELRQLNRRRVELERALADHESQEQQQR 864
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 662 GQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEvrgngyKKIKALECQLETEHEERTLllrekHELERRLSSM--- 738
Cdd:PRK04863 865 SQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIRE------QLDEAEEAKRFVQQHGNAL-----AQLEPIVSVLqsd 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 739 -EDRDRVDRDAEEAlnQKLRRDLRKYKALLKDAQTQLERLK-ADTPGKT-----LIRQLRNQLEDAESARSLAMKARQTA 811
Cdd:PRK04863 934 pEQFEQLKQDYQQA--QQTQRDAKQQAFALTEVVQRRAHFSyEDAAEMLaknsdLNEKLRQRLEQAEQERTRAREQLRQA 1011
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 812 EAELTE---VQAMFDESHRARND-------------------AEERAnAAHRDraELQAQIEENEEELGELMKKYSATVK 869
Cdd:PRK04863 1012 QAQLAQynqVLASLKSSYDAKRQmlqelkqelqdlgvpadsgAEERA-RARRD--ELHARLSANRSRRNQLEKQLTFCEA 1088
|
330 340
....*....|....*....|....*..
gi 442619364 870 QLNTEQINVSEAEFKLNEMEAERNNLK 896
Cdd:PRK04863 1089 EMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
607-780 |
1.49e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 607 LDLEFKEEKLASLQRELEEMtfgggtEEEFAQLRRSKNETERRAKEQEEELDEmagqiqlLEQAKLRLEMTLETMRKEAR 686
Cdd:COG1579 10 LDLQELDSELDRLEHRLKEL------PAELAELEDELAALEARLEAAKTELED-------LEKEIKRLELEIEEVEARIK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 687 RESQQrdeeLEEVRGNgyKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRKYKAL 766
Cdd:COG1579 77 KYEEQ----LGNVRNN--KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEE 150
|
170
....*....|....
gi 442619364 767 LKDAQTQLERLKAD 780
Cdd:COG1579 151 LAELEAELEELEAE 164
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
549-905 |
1.56e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 549 QNARNNLLEK--KQRKFDAECQSLQDAvrqERQAKERYGREKDVLQAEKFTLEQTL--ADTRLDL----EFKEEKLASLQ 620
Cdd:PRK04863 278 ANERRVHLEEalELRRELYTSRRQLAA---EQYRLVEMARELAELNEAESDLEQDYqaASDHLNLvqtaLRQQEKIERYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 621 RELEEMTFGGGTEEEFAQLRRS-KNETERRAKEQEEELDEMAGQIQLLEQAklrLEMtLETmRKEARRESQQRDEELEEV 699
Cdd:PRK04863 355 ADLEELEERLEEQNEVVEEADEqQEENEARAEAAEEEVDELKSQLADYQQA---LDV-QQT-RAIQYQQAVQALERAKQL 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 700 RGN---GYKKIKALECQLETEHEERTLLLREkheLERRLSSMED-RDRVDR------------DAEEALN--QKLRRDLR 761
Cdd:PRK04863 430 CGLpdlTADNAEDWLEEFQAKEQEATEELLS---LEQKLSVAQAaHSQFEQayqlvrkiagevSRSEAWDvaRELLRRLR 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 762 KYKALlkDAQTQLERLKAdtpgKTLIRQLRNQLEDAESARSLAMKARQTAEAElTEVQAMFDESHRARNDAEERANAAHR 841
Cdd:PRK04863 507 EQRHL--AEQLQQLRMRL----SELEQRLRQQQRAERLLAEFCKRLGKNLDDE-DELEQLQEELEARLESLSESVSEARE 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 842 DRAELQAQIEENEEELGELMKK------YSATVKQLNTE------------------QINVSEAEFKLNEMEAERNNLKE 897
Cdd:PRK04863 580 RRMALRQQLEQLQARIQRLAARapawlaAQDALARLREQsgeefedsqdvteymqqlLERERELTVERDELAARKQALDE 659
|
....*...
gi 442619364 898 QVAELQHR 905
Cdd:PRK04863 660 EIERLSQP 667
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
604-1023 |
2.21e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 2.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 604 DTRLDLEFKEEKlaSLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKE----------QEEELDEMAGQIQLLEQAKLR 673
Cdd:PTZ00121 1086 DNRADEATEEAF--GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEarkaedarkaEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 674 LEMTLETMRKEARR-ESQQRDEEL---EEVRGNgyKKIKALECQLETEHEERTLLLReKHELERRLSSMEDRDRVDRDAE 749
Cdd:PTZ00121 1164 RKAEEARKAEDAKKaEAARKAEEVrkaEELRKA--EDARKAEAARKAEEERKAEEAR-KAEDAKKAEAVKKAEEAKKDAE 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 750 EALNQKLRRDLRKYKALLKDAQTQLERLKADTpgKTLIRQLRNQLEDAESARSlAMKARQTAEAELTEVQAMFDESHRAR 829
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAI--KAEEARKADELKKAEEKKK-ADEAKKAEEKKKADEAKKKAEEAKKA 1317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 830 NDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQhrldNV 909
Cdd:PTZ00121 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----KA 1393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 910 ENLGDPSMAMMSKRLELRTKELESRleleQATRARLEVQVNRHKEALEKLQNEvtqskmrEMQAQDVIKKSQKSLRDMRE 989
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKK----KADEAKKKAEEKKKADEAKKKAEE-------AKKADEAKKKAEEAKKAEEA 1462
|
410 420 430
....*....|....*....|....*....|....
gi 442619364 990 EFHAVSSREQESLTRRKDLEKKVEQMESEGAALK 1023
Cdd:PTZ00121 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK 1496
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
389-1018 |
2.25e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 389 SELTVDLAEERSTAHIATERLEAETA--------ERLKLEKELGDQTNKVKNLQETTE------KLEMELICAKSDLNGI 454
Cdd:TIGR00606 411 AQLCADLQSKERLKQEQADEIRDEKKglgrtielKKEILEKKQEELKFVIKELQQLEGssdrilELDQELRKAERELSKA 490
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 455 SEDEDAENedgvgggvyKLKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQVVGQWKRKAQK 534
Cdd:TIGR00606 491 EKNSLTET---------LKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDE 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 535 MTNEMND------LRMLLEEQNARNNLLEKKQRKFDAECQSLQdavrqerQAKERYGREKDVLQAEKFTLEQTLADT--- 605
Cdd:TIGR00606 562 LTSLLGYfpnkkqLEDWLHSKSKEINQTRDRLAKLNKELASLE-------QNKNHINNELESKEEQLSSYEDKLFDVcgs 634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 606 ---RLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNETE----RRAKEQEEELDEMAGQIQlleqAKLRLEMT- 677
Cdd:TIGR00606 635 qdeESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCcpvcQRVFQTEAELQEFISDLQ----SKLRLAPDk 710
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 678 LETMRKEARRESQQRDEELEEVRGngykkikalecqletEHEERTLLLREKHELERRLSSmedrdrVDRDAeealnQKLR 757
Cdd:TIGR00606 711 LKSTESELKKKEKRRDEMLGLAPG---------------RQSIIDLKEKEIPELRNKLQK------VNRDI-----QRLK 764
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 758 RDLRKYKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESArslamKARQTAEAELTEVQAMFDESHRARNDAEERAN 837
Cdd:TIGR00606 765 NDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERK-----IAQQAAKLQGSDLDRTVQQVNQEKQEKQHELD 839
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 838 AAHRDRAELQAQIEENEEElgelMKKYSATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPsM 917
Cdd:TIGR00606 840 TVVSKIELNRKLIQDQQEQ----IQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP-L 914
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 918 AMMSKRLELRTKELESRLElEQATRARLEVQVNR--------HKEALEKL------------QNEVTQSKMREMQAQDVI 977
Cdd:TIGR00606 915 ETFLEKDQQEKEELISSKE-TSNKKAQDKVNDIKekvknihgYMKDIENKiqdgkddylkqkETELNTVNAQLEECEKHQ 993
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 442619364 978 KKSQKSLRDMREEFHAVSSRE---QESLTRRKdLEKKVEQMESE 1018
Cdd:TIGR00606 994 EKINEDMRLMRQDIDTQKIQErwlQDNLTLRK-RENELKEVEEE 1036
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
405-626 |
2.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 405 ATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGIsEDEDAENEDGVgggvyklkyERVARELEF 484
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL-EQELAALEAEL---------AELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 485 TKRRLHTQHEHDLEQLVALKKHLEMklsdAYEEVVEQRQVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFD 564
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQ----PPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 442619364 565 AECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRELEEM 626
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
599-758 |
2.69e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 599 EQTLADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNETERRAKeQEEELDEMAGQIQLLEQAKLRLEMTL 678
Cdd:PRK12705 36 ERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQ-KEEQLDARAEKLDNLENQLEEREKAL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 679 ETMRKEARRESQQRDEELEEVRGngykkikalecqlETEHEERTLLLRE-----KHELERRLSSMEDR--DRVDRDAEEA 751
Cdd:PRK12705 115 SARELELEELEKQLDNELYRVAG-------------LTPEQARKLLLKLldaelEEEKAQRVKKIEEEadLEAERKAQNI 181
|
....*..
gi 442619364 752 LNQKLRR 758
Cdd:PRK12705 182 LAQAMQR 188
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
726-1039 |
3.30e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 41.21 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 726 REKHELERRLSSMEDRDRVDRDAEEALNQKLR------RDLRKYKALLKDAQTQLERLKADTpgktliRQLRNQLEDAES 799
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEDLRSLKADFSQLIEpieailRELPQAKSRLLELEALLAQERAAY------GKLRRELAGLTR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 800 ARSLAMKARQTAEAELTEVQAMFDESHRA--------------RNDAEERANAAHRDRAELQAQIEENEEELGELMKKYS 865
Cdd:pfam19220 77 RLSAAEGELEELVARLAKLEAALREAEAAkeelrielrdktaqAEALERQLAAETEQNRALEEENKALREEAQAAEKALQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 866 ATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAmmskrlelRTKELESRLELEQATRAR- 944
Cdd:pfam19220 157 RAEGELATARERLALLEQENRRLQALSEEQAAELAELTRRLAELETQLDATRA--------RLRALEGQLAAEQAERERa 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 945 ---LEVQVNRHKEALEKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEqmesegaA 1021
Cdd:pfam19220 229 eaqLEEAVEAHRAERASLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLA-------G 301
|
330
....*....|....*...
gi 442619364 1022 LKNDLRLALQRIADLQQA 1039
Cdd:pfam19220 302 LEADLERRTQQFQEMQRA 319
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
653-1038 |
3.66e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 3.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 653 QEEELDEMAGQIQLLEQAKLRLEMTLETMRK---------------------------EARRESQQRDEELEEVRGNgyk 705
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKkhqqlceeknalqeqlqaetelcaeaeEMRARLAARKQELEEILHE--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 706 kikaLECQLETEHEERTLLLREKHELERRLSSMEDRdrvdRDAEEALNQKLRRD-------LRKYKA---LLKDAQTQLE 775
Cdd:pfam01576 80 ----LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQ----LDEEEAARQKLQLEkvtteakIKKLEEdilLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 776 RLKADTPGKtlIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEE-------RANAAHRDRAELQA 848
Cdd:pfam01576 152 KERKLLEER--ISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKakrklegESTDLQEQIAELQA 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 849 QIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAernnlkeQVAELQHRLDN---VENLGDPSMAMMSKRLE 925
Cdd:pfam01576 230 QIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEA-------QISELQEDLESeraARNKAEKQRRDLGEELE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 926 LRTKELESRLE---LEQATRARLEVQVNRHKEALEKlqnevtQSKMREMQAQDVIKKSQKSLRDMREEFhavssreqESL 1002
Cdd:pfam01576 303 ALKTELEDTLDttaAQQELRSKREQEVTELKKALEE------ETRSHEAQLQEMRQKHTQALEELTEQL--------EQA 368
|
410 420 430
....*....|....*....|....*....|....*..
gi 442619364 1003 TRRK-DLEKKVEQMESEGAALKNDLRLALQRIADLQQ 1038
Cdd:pfam01576 369 KRNKaNLEKAKQALESENAELQAELRTLQQAKQDSEH 405
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
695-850 |
4.24e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 4.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 695 ELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLR--RDLRKYKALLKDAQT 772
Cdd:COG1579 21 RLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNKEYEALQKEIES 100
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442619364 773 qLERLKADTpgKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDEshrARNDAEERANAAHRDRAELQAQI 850
Cdd:COG1579 101 -LKRRISDL--EDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE---ELAELEAELEELEAEREELAAKI 172
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
472-956 |
4.90e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 472 KLKYERVARELEFTKRRLhTQHEHDLEQLVALKKHLEMKLSDAYEEVVEQRQvvgqwkRKAQKMTNEMNDLRMLLEEQNA 551
Cdd:COG4913 280 ALRLWFAQRRLELLEAEL-EELRAELARLEAELERLEARLDALREELDELEA------QIRGNGGDRLEQLEREIERLER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 552 RNNLLEKKQRKFDAECQSL-----------QDAVRQERQAKERYGREKDVLQAEKFTLEQTLADTRLDLEFKEEKLASLQ 620
Cdd:COG4913 353 ELEERERRRARLEALLAALglplpasaeefAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 621 R----------------------ELEEMTFGG-----GTEEE-----------------------FAQLRRSKNET---- 646
Cdd:COG4913 433 RrksniparllalrdalaealglDEAELPFVGelievRPEEErwrgaiervlggfaltllvppehYAAALRWVNRLhlrg 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 647 --------ERRAKEQEEELDE--MAGQI------------QLLEQ----------AKLRLE---MTLETMRKE--ARRES 689
Cdd:COG4913 513 rlvyervrTGLPDPERPRLDPdsLAGKLdfkphpfrawleAELGRrfdyvcvdspEELRRHpraITRAGQVKGngTRHEK 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 690 QQRDEELEE-VRG-NGYKKIKALECQLETEHEERTLLLREKHELERRLSSMEDRDRVDRDAEEALNQKLrrDLRKYKALL 767
Cdd:COG4913 593 DDRRRIRSRyVLGfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEI--DVASAEREI 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 768 KDAQTQLERLKADTPG----KTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERANAAHRDR 843
Cdd:COG4913 671 AELEAELERLDASSDDlaalEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 844 AELQAQIEENEEELGELMKKYSATVKQLNTeqinvseaefklnEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKR 923
Cdd:COG4913 751 LEERFAAALGDAVERELRENLEERIDALRA-------------RLNRAEEELERAMRAFNREWPAETADLDADLESLPEY 817
|
570 580 590
....*....|....*....|....*....|....
gi 442619364 924 LELRTKELESRL-ELEQATRARLEVQVNRHKEAL 956
Cdd:COG4913 818 LALLDRLEEDGLpEYEERFKELLNENSIEFVADL 851
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
570-849 |
6.02e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 570 LQDAVRQER-QAKERYGREKDVLQAEKFTLEQtlADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNETER 648
Cdd:pfam12128 598 SEEELRERLdKAEEALQSAREKQAAAEEQLVQ--ANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 649 RAKEQEEELDEMAGQIQLLE-QAKLRLEMTLETMRkEARRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLRE 727
Cdd:pfam12128 676 RKDSANERLNSLEAQLKQLDkKHQAWLEEQKEQKR-EARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALET 754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 728 khELERRLSSME-DRDRVDRDAEE--ALNQKLRRDLRKYKALLKDAQTQLERLKADTPG--------KTLIRQLRNQL-- 794
Cdd:pfam12128 755 --WYKRDLASLGvDPDVIAKLKREirTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRlatqlsniERAISELQQQLar 832
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 442619364 795 --EDAESARSLAMKARQTAEAELTEVqamfDESHRARNDAEERANAAHRDRAELQAQ 849
Cdd:pfam12128 833 liADTKLRRAKLEMERKASEKQQVRL----SENLRGLRCEMSKLATLKEDANSEQAQ 885
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
381-684 |
6.87e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 40.05 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 381 IREEDDELSELTVDLAEERSTAHIATERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLnGISEDEda 460
Cdd:pfam19220 99 LREAEAAKEELRIELRDKTAQAEALERQLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERL-ALLEQE-- 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 461 enedgvGGGVYKLKYERVARELEFTKRrlHTQHEHDLEQLVALKKHLEMKLSdayEEVVEQRQVVGQWKRKAQKMTNEMN 540
Cdd:pfam19220 176 ------NRRLQALSEEQAAELAELTRR--LAELETQLDATRARLRALEGQLA---AEQAERERAEAQLEEAVEAHRAERA 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 541 DLRMLLEEQNARNNLLEKKQRKFDAECQSLQDAVRQ-ERQAKErygrekdvLQAEKFTLEQTLADTRLDLEFKEEKLASL 619
Cdd:pfam19220 245 SLRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAaERRLKE--------ASIERDTLERRLAGLEADLERRTQQFQEM 316
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 620 QR---ELEEM--TFGGGTEEEFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKE 684
Cdd:pfam19220 317 QRaraELEERaeMLTKALAAKDAALERAEERIASLSDRIAELTKRFEVERAALEQANRRLKEELQRERAE 386
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
570-1015 |
7.56e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 570 LQDAVRQERQAKERYGREKDVLQAEKFTLEQTLAD--TRL-DLEFKEEKLASLQRELEEmtfggGTEEEFAQLRRSKNET 646
Cdd:pfam15921 80 LEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDlqTKLqEMQMERDAMADIRRRESQ-----SQEDLRNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 647 ERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMR------KEARRES-----------------------QQRDEELE 697
Cdd:pfam15921 155 EAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRsilvdfEEASGKKiyehdsmstmhfrslgsaiskilRELDTEIS 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 698 EVRGngykKIKALECQLET--------------EHEERTLLLREKHELE-----RRLSSMEDRDRVDRDAEEALNQKLRR 758
Cdd:pfam15921 235 YLKG----RIFPVEDQLEAlksesqnkielllqQHQDRIEQLISEHEVEitgltEKASSARSQANSIQSQLEIIQEQARN 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 759 DLRKYKALLKDAQTQLERLKADtpgktlIRQLRNQLEDA--ESARSLAMKARQTAEAElTEVQAMFDESHRARNDAEERA 836
Cdd:pfam15921 311 QNSMYMRQLSDLESTVSQLRSE------LREAKRMYEDKieELEKQLVLANSELTEAR-TERDQFSQESGNLDDQLQKLL 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 837 NAAHRDRAELQAQIEENEEELGELMKKySATV----KQLNTEQINVSEAEFKLNEMEAE-RNNLKEQVAELQHRLDNVEN 911
Cdd:pfam15921 384 ADLHKREKELSLEKEQNKRLWDRDTGN-SITIdhlrRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESLEK 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 912 LGDPSMAMMSKRLELR--TKELESR---LELEQATRARLEVQVNRHKEALEKLQNEVTQSKMR---EMQAQDVIKKSQKS 983
Cdd:pfam15921 463 VSSLTAQLESTKEMLRkvVEELTAKkmtLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlKLQELQHLKNEGDH 542
|
490 500 510
....*....|....*....|....*....|..
gi 442619364 984 LRDMREEFHAVSSREQESLTRRKDLEKKVEQM 1015
Cdd:pfam15921 543 LRNVQTECEALKLQMAEKDKVIEILRQQIENM 574
|
|
| Lebercilin |
pfam15619 |
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ... |
533-669 |
7.79e-03 |
|
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.
Pssm-ID: 464776 [Multi-domain] Cd Length: 193 Bit Score: 38.73 E-value: 7.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 533 QKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQDavrqERQAKERYGREKDVLQAEKftLEQTLADTRLDLEFK 612
Cdd:pfam15619 63 ARHNEEVRVLRERLRRLQEKERDLERKLKEKEAELLRLRD----QLKRLEKLSEDKNLAEREE--LQKKLEQLEAKLEDK 136
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 442619364 613 EEKLASLQRELEEMTfgggteeefAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQ 669
Cdd:pfam15619 137 DEKIQDLERKLELEN---------KSFRRQLAAEKKKHKEAQEEVKILQEEIERLQQ 184
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
780-983 |
7.92e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 40.38 E-value: 7.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 780 DTPGKTLIRQLRNQLEDAESARSLAM-----------KARQTAEAELTEVQAMFDEshrarndAEERANAAHRDRAELQA 848
Cdd:PHA02562 169 DKLNKDKIRELNQQIQTLDMKIDHIQqqiktynknieEQRKKNGENIARKQNKYDE-------LVEEAKTIKAEIEELTD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 849 QIEENEEElgelMKKYSATVKQLNTEQINVS--------EAEF------------KLNEMEAERNNLKEQVAELQHRLDN 908
Cdd:PHA02562 242 ELLNLVMD----IEDPSAALNKLNTAAAKIKskieqfqkVIKMyekggvcptctqQISEGPDRITKIKDKLKELQHSLEK 317
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 442619364 909 VENLGDPSMAMMSKRLELRTK--ELESRLELEQATRARLEVQVNRHKEALEKLQNEVT--QSKMREMQAQDVIKKSQKS 983
Cdd:PHA02562 318 LDTAIDELEEIMDEFNEQSKKllELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVdnAEELAKLQDELDKIVKTKS 396
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
407-696 |
8.44e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 407 ERLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDGVGGGVYKLKYERVARELEFTK 486
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 487 RRLHTQH------EHDLEQLVALKKH---LEMKLSDAYEEVVEqrqVVGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLE 557
Cdd:PRK03918 532 EKLIKLKgeikslKKELEKLEELKKKlaeLEKKLDELEEELAE---LLKELEELGFESVEELEERLKELEPFYNEYLELK 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 558 KKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQAEKFTLEQTLAD-TRLDLEFKEEKLASLQRELEemtfggGTEEEF 636
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKySEEEYEELREEYLELSRELA------GLRAEL 682
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 442619364 637 AQLRRSKNETERRAKEQEEELDEM---AGQIQLLEQAKLRLEMTLETMRK---EARRESQQRDEEL 696
Cdd:PRK03918 683 EELEKRREEIKKTLEKLKEELEERekaKKELEKLEKALERVEELREKVKKykaLLKERALSKVGEI 748
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
686-1018 |
8.74e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.27 E-value: 8.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 686 RRESQQRDEELEEVRGNGYKKIKALECQLETEHEERTLLLREKHELERR-LSSMEDRDRVDRDAEEALNQKLRRDLRKYK 764
Cdd:PLN02939 41 GFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKsTSSDDDHNRASMQRDEAIAAIDNEQQTNSK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 765 ALLKDAQTQLERL----KADTPGKTLIRQLRNQ-LEDAE---SARSLAMKARQTAEAELTEVQAMFDESHRARNDAEERA 836
Cdd:PLN02939 121 DGEQLSDFQLEDLvgmiQNAEKNILLLNQARLQaLEDLEkilTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 837 NAAHRDRAELQAQIEENEEELGELMKKYS----------ATVKQLNTEQINVSEAEFKLNEMEAERNNLKEQVAELQHRL 906
Cdd:PLN02939 201 EQLEKLRNELLIRGATEGLCVHSLSKELDvlkeenmllkDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 907 -------------------DNVENLG----------DPSMAMMSKRLELRTK--ELESRLEleqatrarlevQVNRHKEA 955
Cdd:PLN02939 281 ivaqedvsklsplqydcwwEKVENLQdlldratnqvEKAALVLDQNQDLRDKvdKLEASLK-----------EANVSKFS 349
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 442619364 956 LEKLqnEVTQSKMR----EMQAQDVIKKSQKSL-RDMREEFHAVSSREQESlTRRKDLEKKVEQMESE 1018
Cdd:PLN02939 350 SYKV--ELLQQKLKlleeRLQASDHEIHSYIQLyQESIKEFQDTLSKLKEE-SKKRSLEHPADDMPSE 414
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
713-1016 |
8.85e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.11 E-value: 8.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 713 QLETEHE-ERTLLLREKHELER-------RLSSMEDRDRVDRDAEEALNQKLRRDLRKYKALLKDAQTQLERLKADTPGK 784
Cdd:pfam05557 20 QMELEHKrARIELEKKASALKRqldresdRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKESQL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 785 TLIRQLRNQLEDAESA-RSLAMKARQTAEAELTEVQAM---FDESHRARNDAEERA---NAAHRDRAELQAQIEENEEEL 857
Cdd:pfam05557 100 ADAREVISCLKNELSElRRQIQRAELELQSTNSELEELqerLDLLKAKASEAEQLRqnlEKQQSSLAEAEQRIKELEFEI 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 858 GELmKKYSATVKQLNTEQINVSEAEF----------KLNEMEAERNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLELR 927
Cdd:pfam05557 180 QSQ-EQDSEIVKNSKSELARIPELEKelerlrehnkHLNENIENKLLLKEEVEDLKRKLEREEKYREEAATLELEKEKLE 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 928 TkELESRLELEQATRARLEVQVNRHKEALEKLQNEVTQSKMREMQAQDViKKSQKSLRDMREEFHAVSSREQESLTRRKD 1007
Cdd:pfam05557 259 Q-ELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSA-RQLEKARRELEQELAQYLKKIEDLNKKLKR 336
|
....*....
gi 442619364 1008 LEKKVEQME 1016
Cdd:pfam05557 337 HKALVRRLQ 345
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
606-727 |
9.81e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 9.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 442619364 606 RLDLEFKEEKLASLQRELEEMtfgggtEEEFAQLrrsKNETERRAKEQEEELDEmagqiqllEQAKLRLEMTLETMRKEA 685
Cdd:COG0542 403 RMEIDSKPEELDELERRLEQL------EIEKEAL---KKEQDEASFERLAELRD--------ELAELEEELEALKARWEA 465
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 442619364 686 RRESQQRDEELEEVRGNGYKKIKALECQL---ETEHEERTLLLRE 727
Cdd:COG0542 466 EKELIEEIQELKEELEQRYGKIPELEKELaelEEELAELAPLLRE 510
|
|
| |
