distal antenna, isoform B [Drosophila melanogaster]
Protein Classification
CENP-B_N domain-containing protein( domain architecture ID 10514934)
CENP-B_N domain-containing protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| CENP-B_N | pfam04218 | CENP-B N-terminal DNA-binding domain; Centromere Protein B (CENP-B) is a DNA-binding protein ... |
10-62 | 1.85e-22 | ||
CENP-B N-terminal DNA-binding domain; Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure. : Pssm-ID: 461229 Cd Length: 53 Bit Score: 90.93 E-value: 1.85e-22
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| Name | Accession | Description | Interval | E-value | ||
| CENP-B_N | pfam04218 | CENP-B N-terminal DNA-binding domain; Centromere Protein B (CENP-B) is a DNA-binding protein ... |
10-62 | 1.85e-22 | ||
CENP-B N-terminal DNA-binding domain; Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure. Pssm-ID: 461229 Cd Length: 53 Bit Score: 90.93 E-value: 1.85e-22
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| HTH_Hin_like | cd00569 | Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of ... |
11-48 | 2.22e-05 | ||
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain. Pssm-ID: 259851 [Multi-domain] Cd Length: 42 Bit Score: 41.93 E-value: 2.22e-05
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| InsE | COG2963 | Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
14-53 | 5.17e-03 | ||
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 36.83 E-value: 5.17e-03
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| Name | Accession | Description | Interval | E-value | ||
| CENP-B_N | pfam04218 | CENP-B N-terminal DNA-binding domain; Centromere Protein B (CENP-B) is a DNA-binding protein ... |
10-62 | 1.85e-22 | ||
CENP-B N-terminal DNA-binding domain; Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure. Pssm-ID: 461229 Cd Length: 53 Bit Score: 90.93 E-value: 1.85e-22
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| HTH_Hin_like | cd00569 | Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of ... |
11-48 | 2.22e-05 | ||
Helix-turn-helix domain of Hin and related proteins; This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain. Pssm-ID: 259851 [Multi-domain] Cd Length: 42 Bit Score: 41.93 E-value: 2.22e-05
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| InsE | COG2963 | Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; |
14-53 | 5.17e-03 | ||
Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Pssm-ID: 442203 [Multi-domain] Cd Length: 93 Bit Score: 36.83 E-value: 5.17e-03
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| HTH_28 | pfam13518 | Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is ... |
21-53 | 8.05e-03 | ||
Helix-turn-helix domain; This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding. Pssm-ID: 463908 [Multi-domain] Cd Length: 52 Bit Score: 35.26 E-value: 8.05e-03
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| Blast search parameters | ||||
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