|
Name |
Accession |
Description |
Interval |
E-value |
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
54-579 |
1.40e-23 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 105.07 E-value: 1.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 54 LKEKGNKALSVGNIDDALQCYSEAIKLDPhNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 133
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 134 RFEEA------------------KRTYEEGLKHEANNpQLKEGLQNMEARLAERKFMNpfnmpNLYQKLESDPRTRTLLS 195
Cdd:TIGR00990 209 KYADAlldltasciidgfrneqsAQAVERLLKKFAES-KAKEILETKPENLPSVTFVG-----NYLQSFRPKPRPAGLED 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 196 DptyRELIEQLRNKPSDLGTKLQDPRIMTTLSvllgvdlgsmdeeeeiatpppppppkkeTKPEPMEEDLPENK---KQA 272
Cdd:TIGR00990 283 S---NELDEETGNGQLQLGLKSPESKADESYE----------------------------EAARAFEKALDLGKlgeKEA 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 273 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYItNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYrqiakaYA 351
Cdd:TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPrVTQSYI-KRASMNLELGDPDKAEEDFDKALKLNSEDPDIY------YH 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 352 RiGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYT 431
Cdd:TIGR00990 405 R-AQLHFIKGEFAQAGKDYQKSID--------------------------LDPDFIFSHIQLGVTQYKEGSIASSMATFR 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 432 EAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF------IKGYTRKAAAL-EAMKDYTKAMDVYQKALDL 504
Cdd:TIGR00990 458 RCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETkpmymnVLPLINKALALfQWKQDFIEAENLCEKALII 537
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 544063423 505 DSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAmadpEVQQIMSDPAMRLILEQMQKDPQALSEhlKNPVIAQKIQ 579
Cdd:TIGR00990 538 DPECDIAVATMAQLLLQQGDVDEALKLFERAA----ELARTEGELVQAISYAEATRTQIQVQE--DYPVLASKLQ 606
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
300-569 |
1.87e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 99.70 E-value: 1.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 300 ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrt 379
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQALE---- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 380 pdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQL 459
Cdd:COG0457 71 ----------------------LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 460 ALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSScKEAADGYQRCMMAQYNRHDSPEDVKRRAMAD 539
Cdd:COG0457 129 AIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALA-ALLAAALGEAALALAAAEVLLALLLALEQAL 207
|
250 260 270
....*....|....*....|....*....|
gi 544063423 540 PEVQQIMSDPAMRLILEQMQKDPQALSEHL 569
Cdd:COG0457 208 RKKLAILTLAALAELLLLALALLLALRLAA 237
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
277-561 |
9.12e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.57 E-value: 9.12e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 277 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREdyrqiakAYARIGNS 356
Cdd:COG2956 47 ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE-------ALRLLAEI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 357 YFKEEKYKDAIhfynkslaehrtpdvlkkcQQAEKILKEQERLAYINPDLALEEknkgnecFQKGDYPQAMKHYTEAIKR 436
Cdd:COG2956 120 YEQEGDWEKAI-------------------EVLERLLKLGPENAHAYCELAELY-------LEQGDYDEAIEALEKALKL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 437 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDssckeaadgyq 516
Cdd:COG2956 174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD----------- 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 544063423 517 rcmmaqynrhdsPEDVKRRAMADPEVQQIMSDPAMRLILEQMQKD 561
Cdd:COG2956 243 ------------PSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
278-517 |
1.92e-21 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 93.92 E-value: 1.92e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 278 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSY 357
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 358 FKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN 437
Cdd:COG0457 87 QALGRYEEALEDYDKALE--------------------------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 438 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 517
Cdd:COG0457 141 PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
336-522 |
2.49e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.98 E-value: 2.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 336 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGN 415
Cdd:COG3914 41 LGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGN 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 416 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAM 495
Cdd:COG3914 121 LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAI 200
|
170 180
....*....|....*....|....*..
gi 544063423 496 DVYQKALDLDSSCKEAADGYQRCMMAQ 522
Cdd:COG3914 201 AAYRRALELDPDNADAHSNLLFALRQA 227
|
|
| STI1 |
pfam17830 |
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ... |
529-583 |
3.96e-18 |
|
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.
Pssm-ID: 436075 Cd Length: 55 Bit Score: 78.37 E-value: 3.96e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 544063423 529 PEDVKRRAMADPEVQQIMSDPAMRLILEQMQKDPQALSEHLKNPVIAQKIQKLMD 583
Cdd:pfam17830 1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
342-512 |
9.66e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 79.57 E-value: 9.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 342 DYRQIAKAYARIGNSYFKEEKY-------KDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKG 414
Cdd:COG4785 1 LYALALALLLALALAAAAASKAaillaalLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 415 NECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA 494
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160
|
170
....*....|....*...
gi 544063423 495 MDVYQKALDLDSSCKEAA 512
Cdd:COG4785 161 IADLEKALELDPNDPERA 178
|
|
| STI1 |
pfam17830 |
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ... |
177-231 |
1.19e-16 |
|
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.
Pssm-ID: 436075 Cd Length: 55 Bit Score: 74.13 E-value: 1.19e-16
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 544063423 177 MPNLYQKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLG 231
Cdd:pfam17830 1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
312-536 |
4.78e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.03 E-value: 4.78e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 312 QAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaek 391
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDN-------AEALFNLGNLLLALGRLEEALAALRRALA---------------- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 392 ilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 471
Cdd:COG3914 141 ----------LNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 544063423 472 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAdgyqrCMMAQYNRHDSPEDVKRRA 536
Cdd:COG3914 211 PDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS-----PFALLYLPDDDPAELLALA 270
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
261-471 |
1.14e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.87 E-value: 1.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 261 MEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENr 340
Cdd:COG3914 67 AAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDF- 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 341 edyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQK 420
Cdd:COG3914 146 ------AEAYLNLGEALRRLGRLEEAIAALRRALE--------------------------LDPDNAEALNNLGNALQDL 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 544063423 421 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 471
Cdd:COG3914 194 GRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALA 244
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
267-506 |
3.26e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 72.32 E-value: 3.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 267 ENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPtNMTYITNQAAVYFEKGDYNKCRELCEKAIEVgrenREDYrqi 346
Cdd:TIGR00990 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALEL----DPDY--- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 347 AKAYARIGNSYFKEEKYKDA---------IHFYNKSLAEHRTPDVLKKcqQAEKILKE-----QERLAYIN--------- 403
Cdd:TIGR00990 194 SKALNRRANAYDGLGKYADAlldltasciIDGFRNEQSAQAVERLLKK--FAESKAKEiletkPENLPSVTfvgnylqsf 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 404 ---PDLA-LEEKNKGNECFQKGDYPQAMKH--------YTEAI----------KRNPKDAKLYSNRAACYTKLLEFQLAL 461
Cdd:TIGR00990 272 rpkPRPAgLEDSNELDEETGNGQLQLGLKSpeskadesYEEAArafekaldlgKLGEKEAIALNLRGTFKCLKGKHLEAL 351
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 544063423 462 KDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 506
Cdd:TIGR00990 352 ADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
56-383 |
7.40e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.99 E-value: 7.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 56 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA---YEdgcKTVDLKPDWGKGYSRKAAALEFL 132
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAiriHQ---KLLERDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 133 NRFEEAKRTYEEGLKHEANNPQLKEglqnmeaRLAErkfmnpfnmpnLYQKLESdprtrtllsdptYRELIEQLRnkpsd 212
Cdd:COG2956 90 GLLDRAEELLEKLLELDPDDAEALR-------LLAE-----------IYEQEGD------------WEKAIEVLE----- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 213 lgtKLqdprimttlsvllgvdlgsmdeeeeiatpppppppkketkpepmeedLPENKKQALKEKELGNDAYKKKDFDTAL 292
Cdd:COG2956 135 ---RL-----------------------------------------------LKLGPENAHAYCELAELYLEQGDYDEAI 164
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 293 KHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNsyfkeekYKDAIHFYNK 372
Cdd:COG2956 165 EALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGD-------PEEALELLRK 237
|
330
....*....|.
gi 544063423 373 SLAEHRTPDVL 383
Cdd:COG2956 238 ALELDPSDDLL 248
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
52-155 |
1.44e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.41 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 52 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 131
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158
|
90 100
....*....|....*....|....
gi 544063423 132 LNRFEEAKRTYEEGLKHEANNPQL 155
Cdd:COG3914 159 LGRLEEAIAALRRALELDPDNAEA 182
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
52-168 |
3.97e-12 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 67.89 E-value: 3.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 52 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 131
Cdd:PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82
|
90 100 110
....*....|....*....|....*....|....*..
gi 544063423 132 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARLAE 168
Cdd:PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
57-154 |
4.74e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.18 E-value: 4.74e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 57 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 136
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
|
90
....*....|....*...
gi 544063423 137 EAKRTYEEGLKHEANNPQ 154
Cdd:COG0457 94 EALEDYDKALELDPDDAE 111
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
54-153 |
8.62e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 64.94 E-value: 8.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 54 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 133
Cdd:COG4785 76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG 155
|
90 100
....*....|....*....|
gi 544063423 134 RFEEAKRTYEEGLKHEANNP 153
Cdd:COG4785 156 RYELAIADLEKALELDPNDP 175
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
407-541 |
1.45e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.13 E-value: 1.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 407 ALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 486
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 544063423 487 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYNRHDSPEDVKRRAMADPE 541
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
271-440 |
5.20e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 5.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 271 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREdyrqiakAY 350
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE-------AR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 351 ARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHY 430
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALK--------------------------LDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
170
....*....|
gi 544063423 431 TEAIKRNPKD 440
Cdd:COG4783 130 EKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
383-505 |
5.84e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 5.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 383 LKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 462
Cdd:COG5010 30 ALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKE 109
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 544063423 463 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 505
Cdd:COG5010 110 YYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
65-170 |
6.06e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 63.10 E-value: 6.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 65 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 144
Cdd:COG0457 56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYER 135
|
90 100
....*....|....*....|....*.
gi 544063423 145 GLKHEANNPQLKEGLQNMEARLAERK 170
Cdd:COG0457 136 ALELDPDDADALYNLGIALEKLGRYE 161
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
65-170 |
1.10e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 62.33 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 65 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 144
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
|
90 100
....*....|....*....|....*.
gi 544063423 145 GLKHEANNPQLKEGLQNMEARLAERK 170
Cdd:COG0457 170 LEAAALAALLAAALGEAALALAAAEV 195
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
418-507 |
1.56e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 1.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 418 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKdCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 497
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81
|
90
....*....|
gi 544063423 498 YQKALDLDSS 507
Cdd:COG3063 82 LERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
418-505 |
1.61e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.86 E-value: 1.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 418 FQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 497
Cdd:COG4235 28 LRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAA 107
|
....*...
gi 544063423 498 YQKALDLD 505
Cdd:COG4235 108 WQKLLALL 115
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
312-472 |
2.58e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 2.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 312 QAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaek 391
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDN-------PEAFALLGEILLQLGDLDEAIVLLHEALE---------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 392 ilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 471
Cdd:COG4783 67 ----------LDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
.
gi 544063423 472 P 472
Cdd:COG4783 137 P 137
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
408-507 |
3.96e-10 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 61.73 E-value: 3.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 408 LEEKNKgnECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 487
Cdd:PLN03088 5 LEDKAK--EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82
|
90 100
....*....|....*....|
gi 544063423 488 MKDYTKAMDVYQKALDLDSS 507
Cdd:PLN03088 83 LEEYQTAKAALEKGASLAPG 102
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
278-448 |
8.75e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 59.64 E-value: 8.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 278 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSY 357
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD-------ADALYNLGIAL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 358 FKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRN 437
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
|
170
....*....|.
gi 544063423 438 PKDAKLYSNRA 448
Cdd:COG0457 235 LAALALYQYRA 245
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
277-375 |
1.23e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.55 E-value: 1.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 277 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNS 356
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-------PEALYLLGLA 94
|
90
....*....|....*....
gi 544063423 357 YFKEEKYKDAIHFYNKSLA 375
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLA 113
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
65-147 |
1.56e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.89 E-value: 1.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 65 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 144
Cdd:COG5010 68 GDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
...
gi 544063423 145 GLK 147
Cdd:COG5010 148 ALG 150
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
434-511 |
3.06e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 3.06e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544063423 434 IKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 511
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
56-170 |
3.85e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.20 E-value: 3.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 56 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 135
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88
|
90 100 110
....*....|....*....|....*....|....*
gi 544063423 136 EEAKRTYEEGLKHEANNPQLKEGLQNMEARLAERK 170
Cdd:COG4783 89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
65-152 |
7.06e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 7.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 65 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 144
Cdd:COG4783 52 GDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
....*...
gi 544063423 145 GLKHEANN 152
Cdd:COG4783 132 ALELDPDD 139
|
|
| STI1 |
smart00727 |
Heat shock chaperonin-binding motif; |
539-578 |
8.31e-09 |
|
Heat shock chaperonin-binding motif;
Pssm-ID: 128966 Cd Length: 41 Bit Score: 51.50 E-value: 8.31e-09
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 544063423 539 DPEVQQIMSDPAMRLILEQMQKDPQALSEHLK-NPVIAQKI 578
Cdd:smart00727 1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
425-511 |
1.97e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.09 E-value: 1.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 425 QAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 504
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
....*..
gi 544063423 505 DSSCKEA 511
Cdd:COG4235 81 DPDNPEA 87
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
61-151 |
6.47e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.55 E-value: 6.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 61 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA--YEdgcKTVDLKPDWGKGYSRKAAALEFLNRFEEA 138
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAiaLE---KALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|...
gi 544063423 139 KRTYEEGLKHEAN 151
Cdd:COG3063 79 LAYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
262-377 |
1.22e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.50 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 262 EEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE 341
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
|
90 100 110
....*....|....*....|....*....|....*.
gi 544063423 342 DYRQIAKAYARIGNsyfkeekYKDAIHFYNKSLAEH 377
Cdd:COG5010 124 AYSNLAALLLSLGQ-------DDEAKAALQRALGTS 152
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
58-168 |
1.41e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 58 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 137
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90 100 110
....*....|....*....|....*....|.
gi 544063423 138 AKRTYEEGLKHEANNPQLKEglqnMEARLAE 168
Cdd:COG4235 104 AIAAWQKLLALLPADAPARL----LEASIAE 130
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
282-375 |
2.01e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.01 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 282 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELcEKAIEVGRENredyrqiAKAYARIGNSYFKEE 361
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNN-------AEALLNLAELLLELG 73
|
90
....*....|....
gi 544063423 362 KYKDAIHFYNKSLA 375
Cdd:COG3063 74 DYDEALAYLERALE 87
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
311-375 |
3.45e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.77 E-value: 3.45e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544063423 311 NQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 375
Cdd:pfam13424 8 NLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
57-511 |
4.55e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.16 E-value: 4.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 57 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 136
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 137 EAKRTYEEGLKHEANNPQLKEGLQNMEARLaeRKFMNPFNMPNLYQK-LESDPRTRTLLSdptyrelIEQLRNKPSDlgt 215
Cdd:TIGR02917 279 DARETLQDALKSAPEYLPALLLAGASEYQL--GNLEQAYQYLNQILKyAPNSHQARRLLA-------SIQLRLGRVD--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 216 klqdpRIMTTLSVLLGVDlgsmdeeeeiatpppppppkketkpepmeedlpENKKQALKEkeLGNDAYKKKDFDTALKHY 295
Cdd:TIGR02917 347 -----EAIATLSPALGLD---------------------------------PDDPAALSL--LGEAYLALGDFEKAAEYL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 296 DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG-----NSYFK--EEKYKD--- 365
Cdd:TIGR02917 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGqfdkaLAAAKklEKKQPDnas 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 366 ------AIHFYNKSLAEHRtpdvlkkcQQAEKILKeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK 439
Cdd:TIGR02917 467 lhnllgAIYLGKGDLAKAR--------EAFEKALS-------IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK 531
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 544063423 440 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 511
Cdd:TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
278-534 |
2.69e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 50.47 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 278 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSy 357
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNE- 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 358 fkeekyKDAIHFYNKSLAEHRTPdvlkkcqqaekilkeqerlayINPDLALEEKNKGnecfqKGDYPQAMKHYTEAIKRN 437
Cdd:TIGR02917 550 ------EEAVAWLEKAAELNPQE---------------------IEPALALAQYYLG-----KGQLKKALAILNEAADAA 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 438 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAadgyQR 517
Cdd:TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA----QI 673
|
250
....*....|....*..
gi 544063423 518 CMMAQYNRHDSPEDVKR 534
Cdd:TIGR02917 674 GLAQLLLAAKRTESAKK 690
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
413-511 |
3.31e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 413 KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYT 492
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90
....*....|....*....
gi 544063423 493 KAMDVYQKALDLDSSCKEA 511
Cdd:COG2956 94 RAEELLEKLLELDPDDAEA 112
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
69-154 |
3.72e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 3.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 69 DALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 148
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
....*.
gi 544063423 149 EANNPQ 154
Cdd:COG4235 81 DPDNPE 86
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
58-159 |
6.93e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.22 E-value: 6.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 58 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 137
Cdd:COG3914 153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
90 100
....*....|....*....|..
gi 544063423 138 AKRtYEEGLKHEANNPQLKEGL 159
Cdd:COG3914 233 YDR-FEELLAALARGPSELSPF 253
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
291-449 |
8.69e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 8.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 291 ALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSyfkeekykdaihfy 370
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDT-------------- 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544063423 371 nkslaehrtpdvlkkcQQAEKILKEQERLAYINPDlALEekNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAA 449
Cdd:COG4235 68 ----------------EEAEELLERALALDPDNPE-ALY--LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
312-472 |
1.02e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 312 QAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaek 391
Cdd:COG5010 19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ---------------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 392 ilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE 471
Cdd:COG5010 83 ----------LDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
.
gi 544063423 472 P 472
Cdd:COG5010 153 P 153
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
414-454 |
1.09e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 42.46 E-value: 1.09e-05
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 544063423 414 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKL 454
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
277-435 |
1.29e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.83 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 277 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNS 356
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY-------AYAYLNRGIA 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 357 YFKEEKYKDAIHFYNKSLAEHRTPDvlkkcqqaEKILKEQERLAYINPDLALEEKNK--GNECFQKGDYPQAMKHYTEAI 434
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPNDP--------ERALWLYLAERKLDPEKALALLLEdwATAYLLQGDTEEARELFKLAL 222
|
.
gi 544063423 435 K 435
Cdd:COG4785 223 A 223
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
347-472 |
1.55e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.61 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 347 AKAYARIGNSYFKEEKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQA 426
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALR--------------------------LDPDNADALLDLAEALLAAGDTEEA 70
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 544063423 427 MKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 472
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
277-405 |
2.85e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 46.70 E-value: 2.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 277 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGrenredyRQIAKAYARIGNS 356
Cdd:PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-------PSLAKAYLRKGTA 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 544063423 357 YFKEEKYKDAIHFYNK--SLA--EHRTPDVLKKCQqaEKILKEQERLAYINPD 405
Cdd:PLN03088 80 CMKLEEYQTAKAALEKgaSLApgDSRFTKLIKECD--EKIAEEEKDLVQPVPS 130
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
277-507 |
3.89e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.62 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 277 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 356
Cdd:TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 357 yfkeekyKDAIHFYNKSLAEHRTP----DVLKKCQQA----EKILKEQERLAYINPD--LALEEKNKGNECFQkgDYPQA 426
Cdd:TIGR02917 584 -------KKALAILNEAADAAPDSpeawLMLGRAQLAagdlNKAVSSFKKLLALQPDsaLALLLLADAYAVMK--NYAKA 654
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 427 MKHYTEAIKRNPKDAKLysnraacytKLLEFQLAL--KDCEECIQLEPTFIKGYTRKAAALE-------AMKDYTKAMDV 497
Cdd:TIGR02917 655 ITSLKRALELKPDNTEA---------QIGLAQLLLaaKRTESAKKIAKSLQKQHPKAALGFElegdlylRQKDYPAAIQA 725
|
250
....*....|
gi 544063423 498 YQKALDLDSS 507
Cdd:TIGR02917 726 YRKALKRAPS 735
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
441-474 |
1.08e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 1.08e-04
10 20 30
....*....|....*....|....*....|....
gi 544063423 441 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 474
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| lysogeny_AimR |
NF038310 |
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR ... |
312-437 |
1.32e-04 |
|
AimR family lysis-lysogeny pheromone receptor; The founding member of this family, AimR (arbitrium receptor), is a DNA-binding phage regulatory protein that acts as a receptor for a 6-amino acid signaling peptide cleaved from the C-terminus of AimP. AimR controls expression of AimX, the third member of the quorum sensing-like arbitrium system and an inhibitor of phage lysogeny.
Pssm-ID: 468467 Cd Length: 363 Bit Score: 44.44 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 312 QAAVYFEKGDYNKCRELCEKAIEvgrENREDYRQIAKAYARIGNSYFKEEkYKDAIHFYNKSLaehrtpDVLKKCQQAEK 391
Cdd:NF038310 193 LAYAYLRRNELEEAREYCNEIIN---SANNFPLLKATAYYCLGESYIFED-YEKALKYLEKSL------ELLKKIKNKKI 262
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 544063423 392 ILKEQE---RLAYI----NPDLALEEKNKGNE----CFQKGDYPQAMKHYTEAIKRN 437
Cdd:NF038310 263 ERKYKAflnTLAFLkiywNKDLDKIDILDPAEkaflEIKKGNKEKAIKILEELEKEN 319
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
281-454 |
1.76e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 281 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKE 360
Cdd:COG4785 48 LAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL-------AEAYNNRGLAYLLL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 361 EKYKDAIHFYNKSLAehrtpdvlkkcqqaekilkeqerlayINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKD 440
Cdd:COG4785 121 GDYDAALEDFDRALE--------------------------LDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174
|
170
....*....|....
gi 544063423 441 AKLYSNRAACYTKL 454
Cdd:COG4785 175 PERALWLYLAERKL 188
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
58-99 |
2.09e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.99 E-value: 2.09e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 544063423 58 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG 99
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
412-522 |
2.29e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.39 E-value: 2.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 412 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTfiKGYTRK------AAAL 485
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD--GGYEKYlylgqlSGGE 82
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 544063423 486 EAMKDYTKAMDVYQKALD---LDSSCKEAADGYQRCMMAQ 522
Cdd:cd24142 83 EALQYYEKGIEILEEELQalqAASAEAEEEAEELKRKLSS 122
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
277-349 |
2.94e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 2.94e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544063423 277 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY---RQIAKA 349
Cdd:COG4235 56 DLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARlleASIAEA 131
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
411-440 |
3.02e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 3.02e-04
10 20 30
....*....|....*....|....*....|
gi 544063423 411 KNKGNECFQKGDYPQAMKHYTEAIKRNPKD 440
Cdd:pfam00515 5 YNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
52-117 |
3.20e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.00 E-value: 3.20e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 544063423 52 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 117
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
65-169 |
3.55e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.69 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 65 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEE 144
Cdd:COG0457 124 GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
|
90 100
....*....|....*....|....*
gi 544063423 145 GLKHEANNPQLKEGLQNMEARLAER 169
Cdd:COG0457 204 EQALRKKLAILTLAALAELLLLALA 228
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
287-507 |
3.70e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.53 E-value: 3.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 287 DFDTALKHYDKAKELDptnmtYITNQAAVYFEK-----GDYNKCRELCEKAIEVGRENRedyrqiAKAYARIGNSYFKEE 361
Cdd:TIGR02917 71 DYAAAEKELRKALSLG-----YPKNQVLPLLARayllqGKFQQVLDELPGKTLLDDEGA------AELLALRGLAYLGLG 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 362 KYKDAIHFYNKSLA--EHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKN------KGNECFQKGDYPQAMKHYTEA 433
Cdd:TIGR02917 140 QLELAQKSYEQALAidPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNvdalllKGDLLLSLGNIELALAAYRKA 219
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 544063423 434 IKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 507
Cdd:TIGR02917 220 IALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE 293
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
347-375 |
4.40e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 4.40e-04
10 20
....*....|....*....|....*....
gi 544063423 347 AKAYARIGNSYFKEEKYKDAIHFYNKSLA 375
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALE 29
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
411-440 |
4.81e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 4.81e-04
10 20 30
....*....|....*....|....*....|
gi 544063423 411 KNKGNECFQKGDYPQAMKHYTEAIKRNPKD 440
Cdd:smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
315-439 |
5.08e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 5.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 315 VYFEKGDYNKCRELCEKAIEVGRENredyrqiAKAYARIGNSYFKEEKYKDAIHFynkslaehrtpdvlkkcqqaekilk 394
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDN-------ADALNNLGLLLLEQGRYDEAIAL------------------------- 48
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 544063423 395 eqERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPK 439
Cdd:COG3063 49 --EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
281-507 |
6.03e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 281 DAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYnkcrelcEKAIEVGRENREDYRQIAKAYARIGNSYFK 359
Cdd:TIGR02917 643 DAYAvMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT-------ESAKKIAKSLQKQHPKAALGFELEGDLYLR 715
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 360 EEKYKDAIHFYNKSLAE----------HRTPDVLKKCQQAEKILKEQERlayINPDLALEEKNKGNECFQKGDYPQAMKH 429
Cdd:TIGR02917 716 QKDYPAAIQAYRKALKRapssqnaiklHRALLASGNTAEAVKTLEAWLK---THPNDAVLRTALAELYLAQKDYDKAIKH 792
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 544063423 430 YTEAIKRNPKDAKLYSNRAACYTKLLEFQlALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 507
Cdd:TIGR02917 793 YQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
418-503 |
6.69e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 6.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 418 FQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK---GYTRKAAALEAMKDY 491
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDY 83
|
90
....*....|..
gi 544063423 492 TKAMDVYQKALD 503
Cdd:COG1729 84 DKARATLEELIK 95
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
347-374 |
6.84e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 6.84e-04
10 20
....*....|....*....|....*...
gi 544063423 347 AKAYARIGNSYFKEEKYKDAIHFYNKSL 374
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
62-356 |
7.15e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 62 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT 141
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 142 YEEglkHEANNPQLKEGlQNMEARLAERKFMNPFNMPNLYQKLESDPRTRTLLSDPTYrelieQLRNKPSDLGTKL---- 217
Cdd:TIGR02917 692 AKS---LQKQHPKAALG-FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA-----LLASGNTAEAVKTleaw 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 218 --QDPRIMTTLSVLLGVDLGSMDeeeeiatpppppppkketkpepmeEDLPENKKQALKEKE------LGNDA--YKKKD 287
Cdd:TIGR02917 763 lkTHPNDAVLRTALAELYLAQKD------------------------YDKAIKHYQTVVKKApdnavvLNNLAwlYLELK 818
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 544063423 288 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 356
Cdd:TIGR02917 819 DPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
440-570 |
7.31e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.18 E-value: 7.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 440 DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 519
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 544063423 520 MAQyNRHDSPEDVKRRAMA----DPEVQQIMSDpamrlILEQMQKDPQALSEHLK 570
Cdd:COG4783 83 LKA-GDYDEALALLEKALKldpeHPEAYLRLAR-----AYRALGRPDEAIAALEK 131
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
441-474 |
1.73e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 36.27 E-value: 1.73e-03
10 20 30
....*....|....*....|....*....|....
gi 544063423 441 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 474
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
432-540 |
1.77e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 432 EAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 511
Cdd:COG5010 45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124
|
90 100
....*....|....*....|....*....
gi 544063423 512 ADGYQRCMMAQYNRHDSPEDVKRRAMADP 540
Cdd:COG5010 125 YSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
278-305 |
1.90e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 1.90e-03
10 20
....*....|....*....|....*...
gi 544063423 278 LGNDAYKKKDFDTALKHYDKAKELDPTN 305
Cdd:pfam00515 7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
414-501 |
2.29e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.87 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 414 GNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG-----YTRkaaALEA 487
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFKSSdahllYAR---ALEA 172
|
90
....*....|....
gi 544063423 488 MKDYTKAMDVYQKA 501
Cdd:COG4700 173 LGDLEAAEAELEAL 186
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
316-439 |
2.83e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 316 YFEKGDYNKCRELCEKAIEvgreNREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH----RTPDVLKKcqqaek 391
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYpdspKAPDALLK------ 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 544063423 392 ilkeqerLAYINpdlaleeknkgnecFQKGDYPQAMKHYTEAIKRNPK 439
Cdd:COG1729 73 -------LGLSY--------------LELGDYDKARATLEELIKKYPD 99
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
65-116 |
2.87e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 2.87e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 544063423 65 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 116
Cdd:COG5010 102 GDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
277-335 |
2.87e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.92 E-value: 2.87e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 544063423 277 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 335
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIEL 63
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
281-377 |
3.03e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 37.66 E-value: 3.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 281 DAYKKKDFDTALKHYDKAKELDPTNmTYITN----QAAVYFEKGDYNKCRELCEKAIevgrENREDYRQIAKAYARIGNS 356
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNS-PLAPDalywLGEAYYALGDYDEAAEAFEKLL----KRYPDSPKAPDALLKLGLS 76
|
90 100
....*....|....*....|.
gi 544063423 357 YFKEEKYKDAIHFYNKSLAEH 377
Cdd:COG1729 77 YLELGDYDKARATLEELIKKY 97
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
54-84 |
3.06e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 3.06e-03
10 20 30
....*....|....*....|....*....|.
gi 544063423 54 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN 84
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
54-84 |
3.68e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 3.68e-03
10 20 30
....*....|....*....|....*....|.
gi 544063423 54 LKEKGNKALSVGNIDDALQCYSEAIKLDPHN 84
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
450-544 |
4.14e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.69 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 450 CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDvYQKALDLDSSCKEAADGYQRCMMAQYNRHDSP 529
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 544063423 530 EDVKRRAMADPEVQQ 544
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
282-506 |
4.19e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.51 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 282 AYKKKDFDTALKHYDKAKELDPTN--MTYITnQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN---- 355
Cdd:COG3071 60 AQALGDYERRDEYLAQALELAPEAelAVLLT-RAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDweel 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 356 ----------SYFKEEKYK------------------DAIHFYNKSL--AEHRTPDV----------LKKCQQAEKILKE 395
Cdd:COG3071 139 lellpalrkhKALSAEEAQalerraylgllrqaardaEALKALWKALprAERRDPELaaayaraliaLGDHDEAERLLRE 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 396 ------QERLAYINPDLALeeknkgnecfqkGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ 469
Cdd:COG3071 219 alkrqwDPRLVRLYGRLQG------------GDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALA 286
|
250 260 270
....*....|....*....|....*....|....*..
gi 544063423 470 LEPTfIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS 506
Cdd:COG3071 287 LRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
87-170 |
5.24e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 5.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 544063423 87 LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEARL 166
Cdd:COG5010 56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
....
gi 544063423 167 AERK 170
Cdd:COG5010 136 GQDD 139
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
276-305 |
6.21e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 6.21e-03
10 20 30
....*....|....*....|....*....|
gi 544063423 276 KELGNDAYKKKDFDTALKHYDKAKELDPTN 305
Cdd:smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
279-320 |
8.83e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 34.37 E-value: 8.83e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 544063423 279 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG 320
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
475-508 |
9.28e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 33.93 E-value: 9.28e-03
10 20 30
....*....|....*....|....*....|....
gi 544063423 475 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 508
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| |
